genome.fa.s4.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  112  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35954910--35955018	53	2.1	53	98	0	209	27	11	16	44	1.83
35961707--35961733	5	5.4	5	100	0	54	22	0	77	0	0.76
35966046--35966073	3	9.3	3	100	0	56	0	0	67	32	0.91
35967692--35967725	14	2.4	14	90	5	50	44	2	0	52	1.16
35977359--35977408	20	2.5	20	80	6	57	28	0	28	44	1.55
35984879--35984920	10	4.1	11	79	14	54	52	0	0	47	1.00
35985298--35985357	28	2.1	28	84	6	77	56	3	0	40	1.16
35985373--35985429	29	2.1	29	83	9	75	50	1	0	47	1.11
35985275--35985467	93	2.1	94	85	5	266	47	3	1	48	1.26
35989900--35989937	3	12.3	3	94	5	67	34	0	0	65	0.93
35990153--35990208	14	4.0	14	73	0	58	30	30	12	26	1.93
35991173--35991283	9	11.9	9	70	14	64	25	0	9	65	1.21
35991205--35991275	28	2.5	28	80	11	74	25	0	9	64	1.24
35998218--35998307	46	2.0	46	90	0	144	37	12	13	36	1.82
35998615--35998649	18	2.0	18	88	5	54	54	2	0	42	1.15
36000406--36000465	25	2.4	26	80	8	70	66	1	8	23	1.28
36001140--36001245	51	2.1	51	80	3	115	53	9	0	35	1.40
36001042--36001497	143	3.1	142	81	7	481	46	8	2	42	1.48
36003593--36003689	42	2.4	40	84	5	115	6	5	18	70	1.28
36003591--36003689	21	4.8	20	79	9	103	6	5	19	69	1.28
36003636--36003689	20	2.8	19	83	10	74	5	3	18	72	1.20
36003694--36003801	12	9.3	12	76	6	80	10	2	16	70	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36003694--36003802	35	3.2	32	69	20	80	10	2	16	70	1.26
36003752--36003814	20	3.0	20	78	13	72	11	3	19	66	1.36
36003924--36003978	28	2.0	28	82	7	67	23	1	5	69	1.19
36004256--36004284	14	2.1	14	93	6	51	41	0	0	58	0.98
36011236--36011301	34	2.0	33	84	3	87	43	3	3	50	1.33
36011553--36011594	20	2.1	20	100	0	84	61	0	4	33	1.17
36012274--36012313	19	2.1	19	100	0	80	32	5	0	62	1.17
36012274--36012334	19	3.2	20	82	11	74	27	4	3	63	1.30
36016182--36016232	22	2.4	22	86	3	77	27	25	27	19	1.99
36018189--36018354	83	2.0	82	96	1	305	38	6	30	24	1.80
36019734--36019780	18	2.6	18	89	3	67	23	21	27	27	1.99
36026478--36026633	78	2.0	77	87	9	228	41	10	25	23	1.86
36026756--36026841	35	2.4	36	90	1	129	22	19	25	32	1.97
36026756--36026841	18	4.8	18	81	2	102	22	19	25	32	1.97
36032532--36032573	19	2.2	19	83	8	50	40	0	4	54	1.21
36038463--36038500	7	5.4	7	90	0	58	28	34	0	36	1.58
36038805--36038856	14	3.5	14	75	14	59	59	7	0	32	1.26
36038801--36038863	31	2.0	31	100	0	126	55	9	0	34	1.32
36038805--36038863	14	4.0	14	75	12	55	57	6	0	35	1.25
36044719--36044796	6	13.0	6	77	14	81	47	2	0	50	1.15
36044699--36044788	17	5.1	17	75	11	83	45	2	3	48	1.31
36046681--36047091	29	14.0	27	69	19	168	35	27	2	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36046750--36047128	59	6.4	58	85	8	428	34	28	1	35	1.67
36046692--36047091	118	3.4	118	86	3	531	35	27	2	35	1.69
36046750--36047130	177	2.1	176	84	7	484	34	28	1	34	1.67
36047020--36047111	29	3.1	28	70	11	69	33	25	3	38	1.72
36046692--36047141	118	3.8	117	81	7	457	35	27	2	34	1.72
36051685--36051731	24	2.0	24	82	0	58	34	6	8	51	1.58
36057292--36057418	45	2.8	44	77	15	127	27	15	16	40	1.89
36060412--36060454	20	2.2	20	83	8	52	32	18	2	46	1.62
36065082--36065135	21	2.6	21	82	5	65	38	11	25	24	1.88
36067183--36067501	161	2.0	162	88	1	480	23	26	12	37	1.91
36070304--36070345	20	2.0	20	86	4	57	33	19	2	45	1.63
36071916--36071946	16	1.9	16	93	0	53	9	9	6	74	1.23
36072825--36072881	19	3.1	17	75	12	51	54	3	5	36	1.40
36074482--36074657	78	2.3	77	84	3	230	37	24	17	20	1.94
36074482--36074666	76	2.4	77	81	5	232	37	23	17	21	1.94
36074482--36074691	76	2.7	76	80	2	197	36	22	18	22	1.95
36074676--36074754	39	2.0	40	85	2	106	29	21	21	27	1.99
36076983--36077007	12	2.1	12	100	0	50	76	0	0	24	0.80
36078231--36078327	32	3.2	32	69	19	109	41	3	8	47	1.49
36078212--36078326	57	2.0	57	100	0	230	43	1	8	46	1.45
36089033--36089069	17	2.4	16	83	16	51	10	5	0	83	0.79
36102731--36102792	7	9.1	7	78	7	65	33	24	25	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36102719--36102791	21	3.7	21	83	7	82	36	24	21	16	1.94
36102732--36102792	14	4.5	14	79	4	72	34	24	24	16	1.95
36103494--36103558	29	2.2	29	88	2	94	41	6	12	40	1.67
36110484--36110624	30	4.7	30	81	7	155	35	25	1	37	1.65
36110618--36110688	29	2.4	29	84	9	83	39	22	5	32	1.77
36110633--36110689	29	2.0	29	89	6	89	36	26	5	31	1.79
36110674--36110789	29	3.9	31	75	10	91	37	24	2	35	1.69
36119356--36119399	21	2.2	20	84	11	56	47	0	0	52	1.00
36119352--36119404	18	2.9	18	77	5	63	50	0	0	49	1.00
36119365--36119408	21	2.2	20	87	4	61	50	0	0	50	1.00
36123011--36123100	39	2.3	39	88	3	128	35	21	13	30	1.91
36124416--36124442	13	2.1	13	100	0	54	37	22	7	33	1.82
36129674--36129706	12	2.9	12	91	8	52	9	9	18	63	1.49
36129803--36129838	12	3.0	12	87	0	54	30	16	13	38	1.88
36132193--36132249	30	2.0	28	86	13	80	35	1	1	61	1.17
36132190--36132255	28	2.3	28	80	19	75	36	1	1	60	1.15
36132501--36132530	16	1.9	16	93	6	53	40	6	6	46	1.56
36137309--36137366	28	2.0	29	93	3	100	31	18	10	39	1.85
36141399--36141442	23	2.0	20	87	12	61	22	0	6	70	1.11
36142949--36143028	33	2.4	33	83	4	99	35	6	13	45	1.69
36142967--36143041	33	2.2	33	83	2	87	32	6	14	46	1.71
36146244--36146446	97	2.1	96	86	5	275	39	2	11	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36146499--36146532	15	2.2	16	94	5	61	20	5	0	73	1.04
36152425--36152515	10	9.7	10	71	17	54	31	3	0	64	1.09
36152431--36152499	36	1.9	36	88	5	104	33	2	0	63	1.09
36152425--36152512	18	4.8	17	79	13	79	30	3	0	65	1.09
36152507--36152539	12	2.8	12	90	9	50	54	0	0	45	0.99
36153190--36153231	20	2.2	20	87	8	61	35	7	2	54	1.41
36153433--36153464	15	2.1	16	94	5	57	31	9	25	34	1.87
36164148--36164369	59	3.8	59	80	3	225	38	5	25	31	1.78
36164279--36164364	29	2.9	31	67	20	83	41	4	22	31	1.74
36166305--36166386	11	7.5	11	80	10	80	53	2	1	42	1.21
36166305--36166375	6	13.0	6	81	14	75	53	1	1	43	1.18
36166305--36166360	29	2.0	29	92	3	96	51	1	1	44	1.22
36166340--36166382	20	2.1	21	86	4	61	53	2	2	41	1.26
36166740--36166783	14	3.1	14	78	12	54	25	2	0	72	0.96
36175589--36175638	18	2.8	18	96	3	93	48	0	6	46	1.27
36177493--36177561	29	2.4	27	77	20	68	47	7	17	27	1.73
36178338--36178424	4	22.2	4	88	6	90	66	0	33	0	0.92
36178332--36178436	42	2.4	45	79	7	117	65	0	33	0	0.99
36181411--36181541	7	18.9	7	70	13	74	27	0	29	42	1.61
36181489--36181529	22	1.9	21	90	5	64	31	0	29	39	1.57
36181412--36181529	35	3.4	35	75	9	107	27	0	28	42	1.61
36181787--36181876	45	2.0	44	86	2	126	20	17	31	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36183691--36183785	30	3.2	30	71	14	106	45	10	6	37	1.64
36183862--36183897	13	2.8	13	82	0	54	30	0	0	69	0.89
36190132--36190187	25	2.3	24	81	3	67	48	0	1	50	1.11
36191006--36191043	20	2.1	19	85	14	53	42	0	0	57	0.98
36194656--36194740	42	2.0	42	95	0	152	45	7	17	29	1.75
36194661--36194757	42	2.3	42	85	5	126	52	7	14	25	1.67
36198603--36198643	3	13.3	3	84	5	55	36	0	0	63	0.95
36199285--36199340	6	10.0	6	75	14	57	57	1	0	41	1.09
36199285--36199340	17	3.4	17	92	2	96	57	1	0	41	1.09
36206151--36206177	14	1.9	14	100	0	54	29	0	18	51	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193