genome.fa.s4.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  155  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48025515--48025553	6	6.5	6	87	0	51	23	30	0	46	1.53
48041277--48041308	3	10.7	3	100	0	64	31	34	34	0	1.58
48046773--48046837	24	2.5	26	80	9	80	40	4	4	50	1.43
48054705--48054810	52	2.0	52	82	10	128	36	14	19	29	1.91
48064496--48064575	42	1.9	42	92	0	133	31	18	27	22	1.97
48065815--48065859	6	7.5	6	94	0	81	20	31	0	48	1.49
48070520--48070561	2	21.5	2	95	4	77	50	0	0	50	1.00
48077586--48077636	2	25.0	2	96	4	93	49	0	1	49	1.12
48078573--48078638	25	2.5	27	85	4	91	46	3	4	45	1.38
48078571--48078653	25	3.2	26	79	14	75	45	3	4	45	1.42
48084661--48084797	51	2.6	52	81	7	154	31	13	24	29	1.94
48084661--48084798	53	2.6	50	77	10	134	31	13	24	30	1.94
48085507--48085559	21	2.5	21	100	0	106	26	15	24	33	1.95
48086529--48086569	21	2.0	21	85	9	57	24	26	0	48	1.51
48086704--48086743	20	2.0	20	90	9	64	25	30	0	45	1.54
48088864--48088896	13	2.5	13	95	0	57	24	15	0	60	1.35
48090668--48090703	18	2.1	18	89	5	56	69	0	0	30	0.89
48091290--48091673	126	3.0	126	99	0	750	32	16	13	37	1.88
48092606--48092650	7	6.7	7	95	5	76	40	0	60	0	0.97
48103356--48103404	22	2.5	18	77	22	62	40	4	20	34	1.71
48103364--48103409	22	2.1	22	100	0	92	45	4	17	32	1.68
48105596--48105951	30	11.8	30	83	5	359	37	26	1	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48116409--48116477	27	2.5	28	77	15	79	59	2	0	37	1.12
48120526--48120560	14	2.5	14	95	0	61	22	28	17	31	1.96
48120809--48120859	17	3.2	17	70	16	54	31	19	17	31	1.95
48120793--48120938	33	4.5	32	72	8	116	28	19	22	30	1.98
48121186--48121234	23	2.1	23	92	0	80	36	10	14	38	1.80
48124628--48124908	138	2.0	138	98	0	544	28	16	10	44	1.80
48127560--48127657	48	2.1	46	86	3	133	41	9	11	37	1.73
48134885--48134944	21	3.1	18	75	15	57	21	3	1	73	1.07
48134927--48134964	16	2.3	17	86	4	51	13	10	2	73	1.19
48137713--48137759	23	2.1	22	84	4	58	19	4	0	76	0.95
48137717--48137759	18	2.4	17	82	17	52	18	4	0	76	0.95
48137759--48137807	11	4.4	11	80	14	64	75	0	8	16	1.03
48137758--48137800	23	2.0	21	90	9	68	76	0	6	16	0.99
48137837--48137882	6	8.2	6	83	9	53	19	0	2	78	0.86
48137839--48137882	17	2.6	18	82	13	58	18	0	2	79	0.83
48137821--48137877	28	2.1	27	87	9	80	19	1	3	75	1.04
48137839--48137885	11	4.2	12	84	13	64	19	0	2	78	0.85
48151239--48151274	12	2.8	13	87	8	56	33	0	0	66	0.92
48151418--48151482	30	2.2	30	97	0	121	58	15	3	23	1.51
48152975--48153004	7	4.3	7	100	0	60	0	0	13	86	0.57
48159832--48159900	31	2.3	31	83	11	83	47	2	0	49	1.16
48161002--48161027	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48167463--48167946	100	4.9	100	85	4	647	40	20	24	14	1.90
48167525--48167885	50	7.3	48	69	12	212	39	20	25	14	1.91
48167463--48167946	196	2.4	199	88	2	715	40	20	24	14	1.90
48168363--48168394	15	2.1	15	94	0	55	46	3	0	50	1.17
48168336--48168445	6	19.8	6	65	22	62	45	1	1	50	1.22
48168354--48168445	11	8.4	11	71	20	59	45	1	2	51	1.20
48168336--48168444	17	6.6	16	78	9	105	44	1	1	51	1.22
48168835--48168894	30	2.0	31	83	9	79	40	26	3	30	1.72
48169232--48169267	11	3.0	13	80	19	51	55	0	0	44	0.99
48170371--48170564	30	6.6	30	79	8	195	39	17	2	40	1.63
48170371--48170564	59	3.3	59	81	5	225	39	17	2	40	1.63
48170547--48170934	29	13.5	28	67	21	153	32	26	3	37	1.74
48170539--48170937	58	6.9	58	83	4	470	32	26	3	37	1.74
48170536--48170936	172	2.3	172	84	6	533	32	26	3	37	1.74
48175912--48175951	21	1.9	21	85	10	55	35	0	0	65	0.93
48176711--48176752	21	2.0	20	86	13	59	47	11	0	40	1.40
48177632--48177823	42	4.6	42	85	0	204	26	17	16	39	1.91
48180423--48180454	3	10.7	3	93	0	55	68	0	3	28	1.04
48183645--48183686	19	2.3	19	91	4	68	38	0	0	61	0.96
48183850--48183883	16	2.1	17	88	5	52	64	5	0	29	1.17
48184794--48184827	11	3.1	11	84	16	52	52	17	0	29	1.45
48186664--48186692	3	9.7	3	100	0	58	34	65	0	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48187343--48187372	6	5.0	6	100	0	60	50	0	33	16	1.46
48187402--48187443	3	14.0	3	100	0	84	66	33	0	0	0.92
48193812--48193876	30	2.2	30	86	5	87	33	1	4	60	1.27
48194174--48194217	19	2.3	19	88	0	61	52	2	2	43	1.26
48207325--48207355	2	15.5	2	100	0	62	51	0	0	48	1.00
48207636--48207686	26	2.0	26	84	7	68	1	9	23	64	1.34
48207683--48207739	21	2.8	21	89	2	80	8	0	17	73	1.07
48207685--48207726	15	2.8	15	82	7	50	7	0	16	76	1.00
48207689--48207739	20	2.5	21	87	3	68	9	0	17	72	1.11
48211579--48211978	29	13.8	29	67	14	114	34	2	26	36	1.70
48211609--48211766	58	2.7	57	77	11	135	36	1	26	35	1.65
48211667--48211986	29	11.0	30	71	15	219	33	2	26	37	1.69
48211668--48211986	58	5.5	58	83	8	355	33	2	26	37	1.69
48211668--48211976	116	2.7	115	84	7	392	34	1	25	37	1.68
48213808--48213859	23	2.2	23	82	3	59	46	3	5	44	1.45
48213829--48213873	17	2.6	18	82	3	56	53	0	6	40	1.27
48213956--48214061	54	1.9	56	83	11	139	53	3	8	33	1.49
48217879--48217904	13	2.0	13	100	0	52	46	0	0	53	1.00
48218096--48218138	18	2.4	18	88	0	59	13	46	18	20	1.83
48218106--48218164	18	3.3	18	83	4	66	13	49	13	23	1.78
48225805--48225863	31	1.9	31	82	6	75	32	8	13	45	1.74
48226496--48226572	31	2.5	32	78	6	77	42	11	14	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48227706--48227745	20	2.0	20	90	0	62	22	27	15	35	1.94
48231392--48231440	23	2.1	23	88	3	71	73	4	8	14	1.21
48232255--48232297	19	2.3	19	84	8	52	58	4	0	37	1.19
48232865--48233055	102	1.9	103	86	3	278	26	26	13	34	1.93
48232879--48233083	102	2.0	102	81	3	241	27	25	12	33	1.92
48233738--48233790	4	12.8	4	81	15	63	77	0	3	18	0.92
48233737--48233791	26	2.2	25	87	9	76	78	0	3	18	0.90
48239396--48239444	23	2.1	23	88	3	71	73	4	8	14	1.21
48240259--48240301	19	2.3	19	84	8	52	58	4	0	37	1.19
48240648--48240710	11	5.5	11	83	5	81	41	3	1	53	1.26
48240658--48240726	17	4.1	16	83	12	77	43	1	2	52	1.25
48240655--48240709	6	9.7	6	78	11	62	43	1	1	52	1.22
48241733--48241789	24	2.4	23	76	23	64	61	5	14	19	1.51
48242499--48243054	30	18.6	30	87	4	711	37	23	3	34	1.74
48242793--48243137	60	5.8	58	82	9	171	35	25	4	34	1.75
48266484--48267376	68	12.9	68	86	5	934	33	17	20	27	1.95
48266484--48267095	137	4.5	137	94	1	1039	34	16	20	28	1.95
48266763--48267376	242	2.5	243	83	8	884	33	17	20	28	1.95
48267120--48267500	37	11.0	31	72	15	141	33	18	20	27	1.96
48266535--48267341	205	3.9	200	81	8	781	34	16	21	27	1.95
48266633--48267482	106	8.1	107	77	13	708	34	16	20	28	1.95
48267330--48267398	38	1.9	33	100	0	93	33	15	21	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48267362--48267545	69	2.7	68	93	1	314	32	17	21	28	1.96
48267398--48267501	32	3.1	32	71	12	109	32	21	19	26	1.97
48267968--48268030	11	5.5	11	83	5	81	41	3	1	53	1.26
48267978--48268046	17	4.1	16	83	12	77	43	1	2	52	1.25
48267975--48268029	6	9.7	6	78	11	62	43	1	1	52	1.22
48269050--48269106	24	2.4	23	76	23	64	61	5	14	19	1.51
48269806--48270271	30	15.6	29	87	4	574	37	23	3	34	1.73
48270258--48270392	60	2.3	60	89	2	202	28	31	5	33	1.81
48270254--48270364	29	3.8	30	70	13	97	32	28	5	33	1.80
48274767--48274881	3	37.0	3	81	6	122	37	3	0	58	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193