genome.fa.s4.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  177  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55227986--55228043	24	2.4	24	100	0	116	20	27	18	32	1.97
55231958--55231982	12	2.1	12	100	0	50	8	8	44	40	1.63
55232105--55232134	15	2.0	15	93	0	51	26	13	23	36	1.92
55234938--55235072	67	2.0	67	98	0	261	31	20	14	33	1.93
55235161--55235195	18	1.9	18	88	0	52	17	25	5	51	1.67
55243617--55243786	82	2.1	82	97	0	322	38	24	7	29	1.83
55251028--55251064	19	1.9	19	88	0	56	37	5	18	37	1.74
55251312--55251404	45	2.1	45	93	0	159	53	13	9	22	1.69
55251352--55251430	21	4.3	19	66	23	60	50	15	10	24	1.74
55251353--55251539	55	3.4	55	83	0	221	49	16	9	25	1.75
55252685--55252731	14	3.0	15	81	15	51	46	2	0	51	1.13
55253692--55254039	116	3.0	116	99	0	678	20	28	12	37	1.90
55258479--55258518	16	2.5	17	80	19	50	32	0	2	65	1.06
55260973--55261011	20	1.9	21	84	5	53	17	10	10	61	1.55
55260973--55261012	21	1.9	21	85	10	55	17	10	10	62	1.53
55267003--55267032	14	2.1	15	93	6	53	0	3	26	70	1.03
55268615--55268888	61	4.3	61	73	14	248	35	16	20	28	1.94
55268630--55268771	73	1.9	74	92	4	243	32	14	25	27	1.95
55269270--55269294	12	2.1	12	100	0	50	24	0	8	68	1.16
55274391--55274441	21	2.3	23	90	6	79	45	0	0	54	0.99
55275989--55276056	36	1.9	37	82	14	90	57	0	5	36	1.23
55276630--55276790	55	2.9	55	81	0	187	30	8	11	49	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55282848--55282933	6	15.0	6	72	22	69	41	0	4	53	1.21
55282850--55282942	10	8.9	10	71	23	59	39	0	5	54	1.23
55282848--55282928	17	4.8	17	89	3	119	41	0	4	53	1.22
55282848--55282928	34	2.4	34	91	0	135	41	0	4	53	1.22
55284537--55284754	99	2.2	99	92	0	355	23	19	26	30	1.98
55287651--55287918	30	9.1	28	75	13	200	37	25	2	35	1.70
55287664--55288110	59	7.6	58	71	14	226	36	23	4	34	1.75
55287656--55288110	29	15.4	29	69	15	188	36	24	4	34	1.75
55287694--55288080	88	4.4	90	73	13	225	36	23	4	35	1.75
55290395--55290444	21	2.4	20	90	9	82	0	42	18	40	1.50
55290591--55290660	27	2.6	27	95	0	122	30	34	17	18	1.94
55290645--55291016	41	8.9	40	78	9	323	25	22	27	24	2.00
55290648--55290956	123	2.5	122	84	3	388	25	22	27	24	2.00
55290908--55291006	50	2.0	50	91	0	162	22	22	28	27	1.99
55291003--55291043	22	1.9	21	85	5	55	7	24	19	48	1.74
55291284--55291543	41	6.4	40	78	6	249	24	23	28	24	2.00
55291335--55291543	82	2.5	82	85	1	276	25	23	26	24	2.00
55291287--55291543	123	2.1	120	83	8	324	24	23	27	24	2.00
55301580--55301662	24	3.5	24	86	0	112	50	9	10	28	1.69
55303593--55303643	24	2.1	24	88	0	75	56	9	9	23	1.61
55304878--55304921	21	2.0	23	91	8	74	52	0	0	47	1.00
55305325--55305356	16	2.1	16	88	11	50	59	3	12	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55310594--55310626	16	2.0	17	88	5	50	69	6	0	24	1.10
55310826--55310860	16	2.1	17	89	5	54	54	0	0	45	0.99
55311859--55311898	21	1.9	21	85	10	55	27	7	2	62	1.35
55330679--55330784	50	2.2	48	86	6	142	54	6	2	35	1.41
55332406--55332448	17	2.6	16	75	13	50	20	4	6	67	1.33
55333903--55333948	20	2.2	21	84	7	58	19	28	10	41	1.85
55341849--55342532	228	3.0	228	82	0	713	20	24	26	28	1.99
55344460--55344495	18	2.0	18	88	0	54	41	8	5	44	1.58
55344470--55344504	18	1.9	18	88	0	52	40	8	2	48	1.49
55346172--55346265	46	2.0	46	83	0	116	11	24	24	39	1.89
55346188--55346265	23	3.4	23	67	0	57	11	24	23	41	1.87
55347466--55347584	53	2.2	52	88	4	150	63	9	7	20	1.48
55360039--55360091	24	2.2	25	93	3	90	66	5	7	20	1.38
55367360--55367411	25	2.2	25	82	6	63	53	3	1	40	1.30
55369036--55369078	20	2.2	20	83	4	52	9	20	6	62	1.48
55369141--55369177	3	12.3	3	88	0	56	5	29	0	64	1.15
55370614--55370646	13	2.4	14	90	10	59	39	0	0	60	0.97
55375501--55375531	15	2.1	15	100	0	62	32	12	6	48	1.67
55383664--55383719	21	2.7	21	80	0	76	32	19	19	28	1.97
55386023--55386109	40	2.2	40	87	4	122	58	3	3	34	1.32
55388351--55388411	21	2.8	22	77	5	79	44	13	1	40	1.53
55388851--55388904	27	2.0	27	88	3	81	62	1	0	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55388849--55388907	20	3.0	20	78	14	70	66	1	0	32	1.02
55388849--55388908	10	6.3	9	74	16	50	65	1	0	33	1.03
55389103--55389145	20	2.2	20	88	12	63	37	0	2	60	1.10
55389476--55389513	20	1.9	20	88	0	58	36	5	0	57	1.21
55389566--55389615	20	2.5	20	81	9	59	32	2	2	64	1.16
55389566--55389615	10	5.1	10	74	11	50	32	2	2	64	1.16
55393085--55393120	17	2.1	17	94	0	63	50	16	0	33	1.46
55393210--55393236	2	13.5	2	100	0	54	48	0	0	51	1.00
55402671--55402732	31	2.1	30	90	6	99	51	11	0	37	1.38
55402671--55402735	29	2.2	28	86	10	87	50	10	0	38	1.37
55405197--55405544	58	6.0	58	84	6	400	33	4	29	31	1.79
55405232--55405544	116	2.7	116	88	5	443	33	4	30	32	1.77
55405294--55405546	29	8.7	28	69	19	114	34	3	29	32	1.73
55405502--55405572	29	2.5	28	82	11	74	38	4	23	33	1.75
55407090--55407165	17	4.5	17	73	5	73	51	5	1	42	1.33
55407090--55407165	34	2.2	35	79	6	84	51	5	1	42	1.33
55408822--55409020	23	8.8	22	73	17	133	12	23	21	43	1.86
55408822--55408942	48	2.6	46	79	10	138	11	23	23	41	1.87
55408907--55408981	39	1.9	39	91	0	123	12	22	21	44	1.85
55410460--55410499	18	2.2	18	90	0	62	45	10	5	40	1.60
55421713--55421749	18	2.1	18	89	0	56	24	27	0	48	1.51
55421869--55421908	15	2.7	15	84	3	55	37	20	0	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55442771--55442797	10	2.7	10	100	0	54	51	11	29	7	1.64
55457769--55457794	13	2.0	13	100	0	52	15	0	53	30	1.42
55462532--55462577	15	3.0	15	81	6	56	43	4	0	52	1.21
55473358--55473711	175	2.0	175	99	0	699	20	13	18	46	1.83
55481836--55481870	13	2.7	13	95	0	61	37	42	8	11	1.72
55482140--55482170	4	7.8	4	100	0	62	51	22	0	25	1.48
55482344--55482368	13	1.9	13	100	0	50	44	8	0	48	1.32
55485198--55485223	2	13.0	2	100	0	52	50	0	50	0	1.00
55486417--55486460	18	2.4	18	85	14	56	27	0	9	63	1.24
55506571--55507013	218	2.0	218	97	0	832	45	15	11	27	1.81
55519560--55519622	13	4.9	13	74	3	65	36	17	6	39	1.75
55519998--55520024	14	1.9	14	100	0	54	62	0	22	14	1.31
55520756--55520814	29	2.0	29	87	6	84	59	3	0	37	1.14
55520737--55520811	37	1.9	37	82	12	89	54	4	0	41	1.19
55520826--55520859	11	3.2	11	83	8	52	44	0	0	55	0.99
55520971--55521012	17	2.4	19	80	15	54	73	0	2	23	0.94
55528868--55528946	4	19.8	4	97	0	131	24	3	25	46	1.69
55534996--55535022	2	13.5	2	100	0	54	51	0	48	0	1.00
55540354--55540395	21	2.0	21	90	0	66	57	7	0	35	1.26
55545471--55545736	134	2.0	132	95	2	480	30	15	16	38	1.89
55551303--55551359	21	2.6	23	81	15	68	52	21	0	26	1.47
55552252--55552318	30	2.2	31	86	2	91	28	16	10	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55561970--55562269	159	1.9	156	86	2	420	31	13	19	36	1.90
55564304--55564347	15	2.9	15	86	0	61	43	36	20	0	1.52
55564311--55564354	12	3.7	12	87	0	61	40	36	22	0	1.54
55564848--55564891	18	2.4	18	81	7	54	36	27	22	13	1.92
55578518--55578635	44	2.6	45	76	10	134	37	22	16	23	1.93
55580341--55580373	16	2.1	16	100	0	66	24	27	18	30	1.98
55583562--55583591	14	2.1	14	93	0	51	70	3	6	20	1.25
55587156--55587217	6	10.3	6	100	0	124	0	50	16	33	1.45
55588560--55588598	20	1.9	20	84	5	51	41	2	2	53	1.28
55588778--55588813	18	1.9	19	88	5	56	5	13	2	77	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193