genome.fa.s4.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  149  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46446273--46450445	867	4.8	866	87	2	5625	29	21	15	33	1.94
46452570--46452893	162	2.0	162	98	0	621	43	23	13	20	1.87
46453339--46453413	35	2.2	35	90	2	116	42	8	10	38	1.69
46455606--46455646	23	1.9	20	85	14	55	43	2	2	51	1.28
46456825--46456960	68	2.0	68	98	0	263	25	23	15	36	1.94
46458450--46458489	17	2.3	18	86	4	55	20	0	5	75	0.99
46460485--46460519	14	2.5	14	100	0	70	62	0	0	37	0.95
46460492--46460537	19	2.6	18	76	10	51	52	0	0	47	1.00
46463579--46463629	16	3.2	16	88	0	75	27	17	3	50	1.63
46464042--46464116	22	3.3	22	66	20	64	41	17	8	33	1.78
46464001--46464122	46	2.7	46	92	0	190	40	17	8	33	1.79
46464041--46464148	46	2.3	46	90	0	162	41	18	7	32	1.78
46463985--46464266	159	1.8	151	83	9	370	42	16	9	31	1.80
46468142--46468193	26	2.0	26	96	0	95	25	11	17	46	1.81
46468234--46468662	114	3.8	114	85	1	565	24	26	15	33	1.95
46468578--46468878	96	3.1	96	81	1	343	23	23	15	36	1.94
46469076--46469316	49	5.0	49	85	3	290	20	26	16	36	1.93
46469067--46469330	97	2.7	98	84	1	334	20	25	16	36	1.94
46470327--46470402	32	2.4	32	88	4	109	52	18	1	27	1.53
46471338--46471394	28	2.0	28	96	0	105	47	22	7	22	1.75
46471801--46471842	15	2.7	16	74	7	50	33	0	0	66	0.92
46471895--46471937	20	2.0	20	91	8	68	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46471883--46471944	28	2.1	30	82	11	76	56	1	0	41	1.09
46472235--46472281	19	2.3	21	78	7	62	14	14	0	70	1.18
46477190--46477248	30	2.0	30	83	12	77	49	0	1	49	1.11
46478918--46478996	30	2.6	31	83	2	115	48	13	12	25	1.78
46487733--46487836	54	1.9	54	100	0	208	39	21	7	31	1.81
46490347--46490387	21	2.0	21	86	9	59	68	0	0	31	0.90
46497506--46497574	36	2.0	35	91	5	113	30	10	28	30	1.90
46497865--46497890	2	13.0	2	100	0	52	50	50	0	0	1.00
46498404--46498429	12	2.2	12	100	0	52	34	0	7	57	1.27
46505650--46505701	23	2.3	24	77	12	56	57	0	1	40	1.10
46508998--46509036	2	19.5	2	100	0	78	48	0	0	51	1.00
46524210--46524246	4	9.2	4	100	0	74	0	24	0	75	0.80
46538254--46538304	26	2.0	26	85	11	70	62	1	0	35	1.06
46548272--46548306	17	2.1	17	94	0	61	37	8	11	42	1.72
46554922--46554987	28	2.4	27	80	7	71	81	7	4	6	0.97
46555440--46555467	3	9.3	3	100	0	56	67	0	32	0	0.91
46565819--46565872	29	1.9	27	88	7	81	50	9	1	38	1.45
46568500--46568530	11	2.8	11	90	0	53	0	3	29	67	1.06
46574150--46574317	58	2.8	58	84	5	212	32	4	30	33	1.77
46574181--46574317	60	2.3	58	89	2	211	32	3	31	32	1.75
46574314--46574476	60	2.7	59	85	7	188	33	3	22	40	1.70
46574339--46574476	30	4.6	30	90	4	199	34	2	21	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46575167--46575221	19	2.9	19	79	12	60	3	21	0	74	0.97
46576303--46576359	6	9.8	6	77	7	55	50	5	0	43	1.24
46576303--46576358	17	3.2	17	82	9	69	50	5	0	44	1.25
46576301--46576359	23	2.6	23	83	5	66	52	5	0	42	1.23
46576328--46576378	17	2.8	18	88	5	68	56	7	1	33	1.39
46579409--46579471	31	2.0	31	96	0	117	39	0	20	39	1.53
46581535--46581577	2	21.5	2	100	0	86	48	0	51	0	1.00
46588908--46589079	23	7.5	23	78	8	145	44	21	22	11	1.84
46588957--46589079	46	2.7	46	84	2	167	43	22	21	11	1.84
46588908--46589047	69	2.0	66	86	10	192	45	21	21	12	1.84
46592376--46592417	21	2.0	21	100	0	84	47	9	14	28	1.75
46593312--46593504	51	3.8	51	87	0	269	28	24	13	32	1.94
46594075--46594161	19	4.8	18	68	26	60	43	17	10	28	1.81
46594071--46594178	53	2.0	53	100	0	216	44	16	11	27	1.82
46602575--46602628	21	2.6	21	96	0	99	22	31	14	31	1.94
46606486--46606581	41	2.3	41	92	3	158	36	26	8	29	1.85
46609535--46609671	66	2.1	66	98	0	265	43	11	13	31	1.79
46611681--46611747	28	2.3	29	76	5	73	43	17	10	28	1.82
46617663--46617705	22	2.0	20	86	8	59	62	0	0	37	0.95
46622369--46622792	224	1.9	225	97	0	796	24	15	16	43	1.87
46626593--46626627	17	2.1	16	89	5	52	0	37	0	62	0.95
46627142--46627179	3	12.7	3	94	0	67	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46628024--46628086	17	3.8	17	87	2	92	52	1	0	46	1.10
46628775--46628810	18	2.1	18	89	5	56	41	11	0	47	1.39
46638248--46638311	2	32.0	2	96	0	119	0	51	0	48	1.00
46640911--46640951	6	7.0	6	97	2	75	17	17	0	65	1.27
46646427--46646613	92	2.0	92	98	0	365	32	23	5	38	1.77
46648413--46648446	16	2.1	17	88	5	52	41	2	0	55	1.15
46648984--46649036	22	2.5	22	85	11	67	45	1	3	49	1.31
46649147--46649205	30	2.0	29	93	3	100	44	5	0	50	1.24
46651992--46652020	14	2.0	15	93	6	51	27	13	6	51	1.66
46653590--46653620	16	2.0	16	93	6	55	64	0	0	35	0.94
46673975--46674009	16	2.1	18	89	10	56	62	5	20	11	1.48
46674557--46674702	70	2.1	70	93	0	247	40	10	15	32	1.83
46676080--46676111	6	5.3	6	96	0	55	31	56	0	12	1.37
46682694--46682729	3	12.0	3	100	0	72	66	0	33	0	0.92
46689008--46689078	35	2.0	35	100	0	142	29	22	16	30	1.96
46690790--46690826	19	1.9	19	88	0	56	29	0	0	70	0.88
46692371--46692422	25	2.1	25	100	0	104	23	26	21	28	1.99
46695993--46696022	12	2.5	12	88	0	51	30	0	20	50	1.49
46704120--46704148	2	14.5	2	100	0	58	51	0	0	48	1.00
46704411--46704502	39	2.3	40	98	1	177	31	14	22	31	1.94
46709360--46709454	39	2.4	40	92	3	165	30	17	22	29	1.97
46712817--46712851	18	2.0	17	88	5	52	14	28	28	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46714260--46714386	24	5.3	24	93	0	191	22	29	27	20	1.99
46723992--46724071	35	2.3	35	100	0	160	37	0	5	57	1.21
46725946--46726211	59	4.5	57	84	8	254	34	25	3	35	1.74
46725951--46726209	30	8.8	28	74	12	164	35	25	3	36	1.73
46725990--46726211	59	3.8	60	86	4	283	34	24	4	36	1.76
46726166--46726257	29	3.1	28	71	20	71	34	23	6	34	1.81
46726107--46726296	59	3.2	58	78	8	163	33	25	4	35	1.77
46731496--46731568	13	5.8	12	74	19	51	80	4	12	2	0.95
46732722--46733028	50	6.1	51	72	7	209	40	19	27	13	1.88
46732770--46733033	101	2.6	101	85	0	366	40	19	26	13	1.89
46733028--46733255	93	2.5	92	94	2	402	32	15	20	32	1.93
46733359--46733503	39	3.7	38	73	7	130	24	27	22	26	1.99
46733361--46733598	78	3.1	78	85	1	289	25	27	18	27	1.98
46733400--46733542	39	3.7	38	74	14	121	25	30	19	25	1.98
46733858--46734109	72	3.3	72	67	19	195	36	22	19	21	1.95
46733769--46734109	157	2.2	157	92	0	574	36	21	20	22	1.96
46733927--46734461	205	2.6	205	88	1	752	35	19	22	22	1.96
46734820--46734886	34	2.0	34	88	5	100	34	4	7	53	1.49
46734860--46734895	17	2.1	17	89	0	54	47	2	0	50	1.15
46736752--46737010	30	8.8	28	70	13	137	36	25	2	35	1.70
46736748--46737010	59	4.5	59	81	11	265	36	26	2	34	1.71
46740006--46740058	22	2.4	23	84	6	65	20	5	5	67	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46740318--46740360	17	2.6	17	82	7	54	23	2	0	74	0.93
46740885--46740949	32	1.9	35	81	9	82	41	3	6	49	1.43
46741048--46741096	8	5.8	8	77	13	53	46	0	0	53	1.00
46748852--46748898	22	2.1	22	85	14	62	72	0	0	27	0.85
46749783--46749856	37	2.0	37	94	0	130	25	13	24	36	1.92
46750294--46750407	59	1.9	61	87	7	171	41	0	3	54	1.23
46755409--46755458	8	7.0	7	76	19	50	74	0	26	0	0.83
46756339--46756478	49	2.9	49	78	0	154	35	18	27	18	1.95
46756752--46757263	40	12.9	40	78	7	384	31	24	18	25	1.97
46756753--46757263	79	6.5	79	81	5	424	31	24	18	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193