genome.fa.s4.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  140  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43882226--43882297	16	4.5	16	87	0	108	38	5	27	27	1.79
43882279--43882372	44	2.1	44	86	7	127	30	5	26	37	1.79
43882467--43882612	58	2.5	55	81	13	168	50	0	3	46	1.18
43884452--43884484	11	3.0	11	90	0	57	63	0	12	24	1.28
43886451--43886602	75	2.0	75	94	0	268	26	21	25	27	1.99
43893555--43893631	40	1.9	41	84	7	104	28	12	20	37	1.90
43893869--43893911	19	2.2	20	87	4	61	25	27	0	46	1.53
43895349--43895391	16	2.8	15	79	6	50	39	4	0	55	1.20
43902454--43902769	59	5.4	58	75	14	231	35	4	28	31	1.78
43902496--43902717	29	7.5	29	67	14	114	36	3	27	33	1.74
43902491--43902772	59	4.8	59	86	6	387	35	3	28	32	1.74
43902491--43902772	118	2.4	117	92	1	458	35	3	28	32	1.74
43902513--43902772	29	8.9	27	66	26	97	35	3	27	33	1.74
43902780--43903070	30	9.8	30	85	4	374	33	2	24	39	1.68
43902769--43903070	119	2.5	117	85	6	394	34	2	24	39	1.68
43904584--43904614	15	2.1	15	93	0	53	16	12	54	16	1.71
43904785--43904850	29	2.3	29	94	0	114	53	1	1	43	1.19
43904785--43904850	6	11.3	6	83	6	91	53	1	1	43	1.19
43904785--43904853	23	3.0	22	85	8	86	55	1	1	42	1.18
43905205--43905890	69	10.0	69	94	0	1155	28	20	16	35	1.94
43905242--43905890	31	19.0	32	68	17	326	28	20	16	34	1.94
43905205--43905890	343	2.0	344	93	0	1187	28	20	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43920979--43921233	31	7.7	31	69	21	162	35	18	18	27	1.94
43920936--43921382	68	6.6	68	95	0	718	35	17	19	27	1.94
43921331--43921492	62	2.7	60	91	7	267	37	13	22	26	1.92
43921803--43921873	31	2.4	29	88	4	97	39	4	0	56	1.19
43921801--43921871	11	6.5	11	73	15	58	39	4	0	56	1.19
43921947--43921980	16	2.1	17	94	5	61	35	23	29	11	1.90
43921944--43921982	16	2.5	15	88	12	60	38	25	25	10	1.87
43922869--43922912	19	2.3	18	82	17	54	79	0	6	13	0.92
43923392--43923736	161	2.1	162	82	4	421	26	15	13	45	1.82
43923808--43923892	30	2.8	30	87	1	116	37	24	4	32	1.76
43923872--43924330	59	7.8	59	87	3	599	32	27	4	35	1.78
43923961--43924068	28	3.8	28	68	20	80	32	28	4	34	1.78
43923872--43924329	117	3.9	117	85	5	613	32	27	4	36	1.78
43923872--43924324	176	2.6	177	89	3	675	32	26	4	36	1.77
43924019--43924294	29	9.5	28	63	10	97	31	26	4	36	1.76
43923820--43924301	30	16.4	28	63	13	105	32	26	4	36	1.77
43927018--43927056	20	2.0	20	84	0	51	41	5	17	35	1.72
43927962--43928055	30	3.1	30	100	0	188	28	19	17	35	1.94
43933899--43933961	31	2.1	31	81	3	74	36	3	9	50	1.51
43935414--43935583	29	5.9	28	75	17	134	31	27	4	36	1.78
43935398--43935583	59	3.2	59	85	6	227	30	27	5	36	1.79
43935419--43935609	59	3.2	58	81	8	208	32	25	4	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43937682--43937712	3	10.0	3	93	6	53	67	0	32	0	0.91
43938439--43938480	19	2.2	20	82	4	50	69	0	0	30	0.89
43938429--43938483	29	1.9	28	88	3	83	65	0	0	34	0.93
43939241--43940388	92	12.5	92	93	1	1912	33	15	17	32	1.92
43939241--43940388	182	6.3	183	93	1	1892	33	15	17	32	1.92
43939669--43939823	40	3.6	40	69	23	125	31	15	17	35	1.91
43951816--43952039	59	3.8	59	86	4	337	34	3	29	32	1.73
43951816--43952030	117	1.8	116	92	1	367	34	3	29	32	1.74
43951816--43952071	59	4.4	59	84	3	331	33	2	29	33	1.72
43952047--43952367	30	10.7	30	85	3	405	33	3	23	38	1.73
43952037--43952382	120	2.9	119	89	2	471	32	4	24	38	1.74
43953856--43953886	15	2.1	15	93	0	53	16	12	54	16	1.71
43954066--43954151	17	5.1	17	87	8	113	55	1	1	41	1.14
43954066--43954130	29	2.2	29	94	0	112	53	1	1	43	1.19
43954066--43954148	6	14.3	6	82	7	109	54	1	1	43	1.16
43954066--43954161	23	4.3	23	84	7	117	55	2	1	41	1.18
43959485--43959578	28	3.3	28	89	1	134	45	14	21	18	1.85
43959990--43960027	19	2.0	19	85	10	51	21	13	5	60	1.52
43961327--43961690	29	12.5	29	66	19	170	37	3	27	32	1.73
43961352--43961699	117	3.0	117	89	3	524	37	3	27	32	1.73
43961319--43961693	58	6.4	59	87	5	539	36	3	28	31	1.75
43963460--43963550	6	15.0	6	75	11	78	48	1	2	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43963486--43963559	17	4.6	16	81	11	89	58	1	1	39	1.15
43963485--43963569	31	2.8	31	85	5	104	56	2	1	40	1.20
43963915--43964534	69	9.0	69	92	0	1005	27	21	17	34	1.95
43963915--43964534	137	4.5	137	95	0	1062	27	21	17	34	1.95
43976429--43976675	29	8.5	30	71	10	172	36	3	28	31	1.75
43976422--43976675	58	4.4	58	89	1	366	35	4	29	30	1.77
43977013--43977077	33	2.0	32	84	6	85	56	9	16	16	1.65
43978448--43978538	6	15.0	6	75	11	78	48	1	2	48	1.21
43978474--43978547	17	4.6	16	81	11	89	58	1	1	39	1.15
43978473--43978557	31	2.8	31	85	5	104	56	2	1	40	1.20
43979768--43979809	3	14.0	3	100	0	84	33	0	0	66	0.92
43980725--43980764	21	1.9	21	89	0	62	55	5	27	12	1.58
43981934--43982129	59	3.4	57	76	10	166	35	4	31	29	1.78
43981959--43982058	29	3.4	28	69	18	78	40	7	28	25	1.81
43982121--43982456	30	11.2	29	81	4	321	37	3	21	37	1.71
43982105--43982456	60	5.9	59	83	6	381	36	3	22	37	1.71
43982102--43982470	90	4.1	90	82	3	415	37	3	22	37	1.71
43984396--43984474	25	3.0	25	87	5	95	54	2	3	39	1.32
43984413--43984468	16	3.6	16	86	9	62	57	3	1	37	1.27
43984864--43985466	68	8.8	68	97	0	1107	30	19	16	34	1.93
43997174--43997369	59	3.4	57	75	10	157	36	4	29	29	1.77
43997342--43997699	30	12.0	30	82	5	325	34	3	24	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43998789--43998840	16	3.3	16	91	2	79	36	0	3	59	1.16
43998781--43998827	3	16.0	3	87	12	71	31	0	2	65	1.04
43999657--43999768	6	19.0	6	74	16	101	50	0	4	43	1.28
43999662--43999767	29	3.9	28	87	9	148	51	0	4	42	1.29
43999666--43999709	23	1.9	23	100	0	88	50	0	4	45	1.22
43999657--43999768	17	6.4	17	78	12	95	50	0	4	43	1.28
44003038--44003309	133	2.0	135	94	2	476	31	8	12	46	1.73
44008361--44008837	97	4.9	96	83	4	523	20	27	16	35	1.94
44008364--44008736	48	7.7	47	70	11	218	19	27	17	35	1.94
44016066--44016166	51	2.0	51	84	0	130	23	15	20	39	1.91
44016285--44016335	25	2.0	25	96	0	93	33	3	15	47	1.64
44020669--44020725	29	2.0	29	96	0	105	36	10	24	28	1.88
44026895--44026926	13	2.4	14	94	5	57	81	0	3	15	0.82
44028394--44028424	15	2.1	15	93	0	53	22	6	19	51	1.69
44038821--44038865	22	2.0	22	86	0	63	26	35	11	26	1.90
44040315--44040373	24	2.5	24	91	0	100	22	23	25	28	1.99
44053486--44053520	18	1.9	18	88	0	52	8	5	2	82	0.91
44053513--44053698	62	3.0	62	96	0	354	29	7	18	44	1.78
44053559--44053665	34	3.3	34	65	19	93	31	5	16	45	1.71
44053881--44053931	28	1.9	25	88	11	75	49	3	7	39	1.51
44057222--44057386	30	5.6	30	81	1	181	30	23	5	41	1.77
44057201--44057419	30	7.4	29	75	8	174	33	21	5	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44063877--44063952	27	2.8	27	78	9	82	28	19	7	43	1.79
44065607--44065651	6	7.5	6	89	0	63	22	31	0	46	1.52
44065771--44065810	15	2.7	15	84	3	55	37	20	0	42	1.52
44070077--44070121	16	2.8	16	82	0	63	11	6	33	48	1.65
44071414--44071469	16	3.5	16	85	0	85	39	5	28	26	1.78
44071722--44071759	15	2.5	15	100	0	76	50	0	5	44	1.24
44071722--44071767	15	3.3	14	91	8	60	47	0	4	47	1.21
44071773--44071832	21	2.6	23	82	15	63	58	0	5	36	1.20
44076580--44076635	26	2.2	26	96	0	103	19	26	16	37	1.92
44077450--44077489	15	2.7	15	96	0	71	55	12	20	12	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193