genome.fa.s4.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  30  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9467961--9468124	59	2.8	58	73	8	154	37	3	23	35	1.71
9468084--9468313	60	3.8	59	75	10	207	34	3	22	40	1.69
9468088--9468313	30	7.6	29	72	13	140	34	3	22	40	1.69
9469377--9469442	13	4.7	13	73	15	60	48	1	0	50	1.10
9469389--9469449	27	2.3	25	78	13	68	45	1	0	52	1.10
9469372--9469454	30	2.9	29	77	8	89	45	1	0	53	1.08
9470218--9470262	18	2.6	17	89	3	63	44	0	2	53	1.13
9470221--9470275	17	3.2	17	77	10	58	47	1	1	49	1.23
9470361--9470410	23	2.1	24	82	10	59	28	24	0	48	1.52
9470542--9470581	15	2.7	15	84	3	55	37	20	0	42	1.52
9483660--9483687	4	7.0	4	100	0	56	0	25	0	75	0.81
9487336--9487360	10	2.5	10	100	0	50	32	16	0	52	1.44
9490147--9490207	22	2.8	22	85	7	72	72	3	11	13	1.24
9490173--9490202	15	1.9	16	93	6	53	70	3	13	13	1.30
9490949--9490991	19	2.3	19	84	8	52	58	4	0	37	1.19
9491552--9491745	105	1.9	103	84	8	259	26	24	12	36	1.92
9492249--9492293	8	5.4	8	79	10	54	80	0	4	15	0.87
9495389--9495428	21	1.9	21	89	0	62	25	17	15	42	1.88
9495396--9495439	21	2.1	21	82	0	52	27	15	15	40	1.88
9496978--9497038	22	2.8	22	87	7	81	73	1	11	13	1.16
9496990--9497034	15	2.9	15	80	6	54	73	2	11	13	1.19
9497837--9497879	19	2.3	19	84	8	52	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9506650--9506703	19	2.8	20	77	11	58	38	0	3	57	1.17
9508383--9508442	31	1.9	31	83	6	77	28	11	6	53	1.62
9511703--9511731	3	9.7	3	100	0	58	65	0	0	34	0.93
9521211--9521256	19	2.3	20	88	3	67	52	2	4	41	1.33
9521491--9521536	21	2.2	20	85	14	58	43	4	4	47	1.42
9521574--9521628	28	1.9	29	88	3	85	16	0	10	72	1.11
9521565--9521635	28	2.5	27	77	8	70	19	0	9	70	1.15
9525409--9525520	56	2.0	56	100	0	224	39	16	7	37	1.76
9533752--9534358	59	10.4	59	90	1	913	34	2	28	33	1.71
9533752--9534358	117	5.2	118	88	2	913	34	2	28	33	1.71
9534428--9534766	162	2.1	162	87	2	475	42	13	17	26	1.87
9537139--9537172	17	2.0	17	94	0	59	52	2	0	44	1.16
9543417--9543458	21	2.0	22	85	4	59	47	19	2	30	1.62
9543543--9543605	25	2.4	26	79	10	67	66	3	3	26	1.22
9548864--9549025	58	2.7	59	85	11	222	51	4	0	44	1.21
9554467--9554528	32	1.9	32	86	0	88	25	6	12	54	1.62
9557880--9557939	19	3.1	19	85	9	68	56	6	1	35	1.35
9566439--9566624	51	3.6	51	89	0	273	34	14	22	29	1.93
9577449--9577482	2	17.0	2	100	0	68	50	0	0	50	1.00
9580380--9580405	13	2.0	13	100	0	52	30	30	7	30	1.85
9582764--9582823	25	2.3	25	83	11	68	15	13	11	60	1.60
9584694--9584724	16	1.9	16	93	0	53	54	9	0	35	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9584790--9584884	44	2.2	44	94	0	163	35	11	11	41	1.78
9586048--9586076	12	2.3	13	94	5	51	79	10	0	10	0.94
9587801--9587830	1	30.0	1	100	0	60	0	100	0	0	0.00
9587945--9587985	2	20.5	2	100	0	82	51	0	0	48	1.00
9590607--9590636	4	7.5	4	100	0	60	23	0	0	76	0.78
9591478--9591520	21	2.0	22	86	4	61	44	0	4	51	1.22
9592013--9592071	10	5.6	10	78	11	64	64	1	1	32	1.13
9592013--9592071	21	2.8	21	84	5	66	64	1	1	32	1.13
9592624--9592671	19	2.5	19	72	3	51	54	0	0	45	0.99
9608770--9608819	20	2.5	20	83	9	57	44	0	12	44	1.41
9616753--9616823	25	2.8	25	78	4	72	18	19	25	36	1.94
9619216--9619251	18	2.1	18	89	5	56	50	5	2	41	1.40
9623937--9624020	43	2.0	43	82	0	105	23	16	28	30	1.96
9624160--9624212	15	3.5	15	71	0	52	28	11	16	43	1.83
9625086--9625116	3	10.3	3	92	0	53	3	0	29	67	1.06
9625677--9625992	166	1.9	164	79	8	356	34	12	12	41	1.79
9628954--9629011	23	2.5	23	85	0	89	32	27	18	20	1.97
9629841--9629865	12	2.1	12	100	0	50	24	8	0	68	1.16
9661078--9661137	12	4.8	12	78	15	59	0	30	1	68	0.99
9661079--9661125	15	3.1	15	81	9	51	0	29	2	68	1.02
9666230--9666415	51	3.6	51	84	2	230	33	15	23	27	1.95
9672022--9672103	32	2.5	33	76	6	85	58	8	4	28	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9683716--9683778	24	2.6	24	87	0	90	50	9	14	25	1.72
9685088--9685124	18	2.1	18	94	0	65	27	27	18	27	1.98
9685638--9685700	24	2.6	24	87	0	90	49	12	14	23	1.78
9691417--9691492	38	2.0	38	97	0	143	30	23	3	42	1.72
9701073--9701107	2	17.5	2	87	0	52	48	5	0	45	1.26
9702110--9702146	18	2.1	18	89	0	56	48	5	2	43	1.40
9702240--9702286	22	2.1	22	100	0	94	44	12	8	34	1.73
9705768--9705822	18	3.1	19	84	10	71	29	14	30	25	1.95
9705782--9705822	12	3.4	12	79	0	55	29	14	31	24	1.95
9707302--9707350	24	2.0	26	84	15	68	26	0	8	65	1.20
9708291--9708325	12	2.8	13	83	16	56	60	0	0	40	0.97
9715705--9715735	5	6.2	5	96	0	53	45	0	0	54	0.99
9717046--9717167	36	3.4	36	78	6	131	15	27	22	33	1.95
9729082--9729141	21	2.9	21	82	5	68	33	21	11	33	1.90
9738765--9738815	25	2.0	25	100	0	102	35	7	0	56	1.28
9738928--9738969	17	2.6	16	85	7	50	42	0	2	54	1.13
9741766--9741800	18	1.9	19	88	11	56	51	8	11	28	1.67
9750169--9750299	60	2.2	60	82	4	158	25	14	20	38	1.91
9750413--9750752	62	5.6	61	83	6	347	28	17	16	37	1.91
9750479--9750708	125	1.8	125	88	1	354	27	19	16	36	1.93
9751572--9751623	17	3.4	17	65	29	53	61	3	13	21	1.48
9751577--9751660	28	2.9	28	82	6	96	63	4	8	23	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9751577--9751666	30	3.1	30	87	3	112	63	4	7	24	1.40
9752826--9752887	21	3.0	20	81	6	61	61	1	4	32	1.27
9754053--9754612	85	6.6	85	91	3	853	45	4	6	43	1.49
9754726--9754760	16	2.1	17	89	5	54	51	8	0	40	1.33
9754716--9754773	28	2.1	28	83	0	71	44	10	0	44	1.38
9758441--9758576	59	2.3	59	81	1	146	40	21	18	19	1.92
9758440--9758722	62	4.7	61	78	6	249	38	17	18	25	1.92
9758732--9758945	58	3.6	57	79	10	207	38	14	15	31	1.88
9758729--9758930	61	3.4	59	75	16	191	37	15	14	32	1.88
9758729--9758945	121	1.8	119	88	4	337	38	15	15	30	1.88
9760480--9760532	9	6.8	9	71	28	50	50	0	0	49	1.00
9760476--9760532	20	3.0	20	74	23	59	52	0	0	47	1.00
9760485--9760557	29	2.4	31	95	4	132	53	0	0	46	1.00
9760485--9760564	30	2.7	29	84	9	108	51	0	0	48	1.00
9761716--9761768	9	6.8	9	71	28	50	49	0	0	50	1.00
9761706--9761763	29	2.0	29	96	0	107	46	1	0	51	1.11
9761725--9761766	20	2.0	22	90	9	70	52	0	0	47	1.00
9761716--9761772	20	3.0	20	74	23	59	47	0	0	52	1.00
9762573--9762601	3	9.7	3	100	0	58	34	31	0	34	1.58
9763677--9763707	6	5.2	6	100	0	62	32	16	35	16	1.91
9766133--9766195	30	2.1	30	93	0	108	55	15	4	23	1.59
9772983--9773032	21	2.4	21	89	0	73	36	24	16	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9773203--9773242	21	1.9	21	89	0	62	30	20	20	30	1.97
9775414--9775471	23	2.5	23	91	0	98	25	0	17	56	1.40
9776565--9776645	23	3.6	23	83	5	94	43	19	19	17	1.89
9778345--9778786	191	2.3	194	82	6	524	29	17	26	26	1.97
9779480--9779529	21	2.4	21	82	0	55	28	14	26	32	1.94
9779699--9779727	2	14.5	2	100	0	58	48	0	0	51	1.00
9783131--9783155	8	3.1	8	100	0	50	36	0	12	52	1.39
9785923--9785947	6	4.2	6	100	0	50	36	16	0	48	1.46
9786575--9786625	15	3.5	15	72	5	50	58	0	5	35	1.22
9792838--9792943	52	2.0	53	90	1	169	20	16	21	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193