genome.fa.s4.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  129  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40763994--40764018	12	2.1	12	100	0	50	24	24	0	52	1.48
40766409--40766941	98	5.4	98	81	4	583	37	18	25	18	1.94
40766409--40766941	196	2.7	195	85	2	703	37	18	25	18	1.94
40766469--40767068	49	12.3	49	69	8	317	38	18	25	18	1.93
40766721--40767068	146	2.4	147	82	2	432	37	19	25	17	1.93
40766916--40767098	98	1.9	98	81	6	228	36	21	25	16	1.94
40768099--40768133	10	3.4	10	84	7	52	77	11	0	11	1.00
40768369--40768434	29	2.3	29	97	2	125	28	13	3	54	1.54
40768674--40768971	30	10.1	30	84	5	331	37	24	1	36	1.64
40768674--40768973	89	3.4	90	83	5	380	37	25	1	36	1.64
40768678--40768970	59	4.9	59	85	3	270	38	23	1	36	1.64
40769866--40769911	14	3.1	15	71	22	51	60	8	0	30	1.26
40769864--40769913	16	3.2	16	73	21	61	60	8	0	32	1.26
40769946--40770040	30	3.2	29	72	14	95	36	6	12	44	1.68
40771231--40771313	43	1.9	43	83	9	107	30	12	10	46	1.75
40771863--40771954	45	2.0	45	89	0	139	32	28	18	20	1.96
40772227--40772294	14	4.9	14	73	7	57	47	22	1	29	1.60
40775459--40775497	19	2.1	19	85	0	51	64	17	2	15	1.41
40777554--40777628	34	2.3	33	81	9	82	64	4	2	29	1.26
40783204--40783262	24	2.5	24	85	0	82	49	10	13	27	1.74
40783577--40783639	24	2.6	24	89	0	99	50	11	14	23	1.74
40782932--40783677	373	2.0	371	92	2	1255	46	11	14	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40785410--40785484	24	3.1	24	98	0	141	56	9	12	22	1.64
40787386--40787442	24	2.4	24	84	0	69	49	8	14	28	1.72
40787398--40787448	24	2.1	24	92	0	84	54	5	11	27	1.59
40797996--40799011	268	3.8	268	94	1	1698	23	19	17	39	1.92
40799838--40799868	10	3.0	10	95	4	53	51	0	0	48	1.00
40800600--40800629	11	2.8	11	95	5	53	26	0	0	73	0.84
40802345--40802548	98	2.1	98	89	0	309	27	24	22	25	2.00
40803567--40803668	50	2.0	52	80	3	118	39	16	11	32	1.85
40803647--40803779	59	2.2	61	79	10	148	42	16	12	27	1.85
40803944--40804019	31	2.5	31	86	0	116	31	11	17	39	1.85
40804089--40804224	60	2.2	61	81	3	150	36	11	21	30	1.89
40807008--40807107	38	2.5	41	79	12	109	33	5	0	62	1.17
40807053--40807086	11	3.1	11	91	0	50	23	5	0	70	1.09
40807064--40807127	29	2.2	29	83	5	76	35	1	0	62	1.05
40806944--40807125	40	4.6	38	70	14	97	31	5	1	61	1.28
40807915--40807954	2	20.0	2	94	0	71	0	50	2	47	1.14
40808232--40808650	210	2.0	208	82	6	515	34	20	11	34	1.88
40817113--40817428	49	6.4	49	71	10	162	18	25	17	38	1.92
40817111--40817376	99	2.7	100	82	5	267	17	25	18	37	1.93
40817188--40817376	99	1.9	99	90	0	297	17	25	19	37	1.94
40817167--40817444	148	1.9	147	87	3	407	18	24	17	38	1.92
40818578--40818612	13	2.8	13	95	4	63	31	14	20	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40825359--40825613	29	8.8	29	70	18	156	32	4	30	32	1.77
40825395--40825641	116	2.1	117	88	3	365	34	3	28	33	1.74
40825390--40825644	58	4.4	58	84	5	327	33	3	30	32	1.75
40825716--40826053	162	2.1	162	88	0	496	44	13	17	25	1.84
40826575--40826601	14	1.9	14	100	0	54	37	25	22	14	1.93
40826840--40826923	20	4.2	20	70	16	57	45	3	0	51	1.18
40826900--40826934	9	3.9	9	92	0	52	37	0	2	60	1.12
40827698--40827791	6	15.8	6	70	17	63	55	3	2	39	1.28
40827699--40827778	17	4.9	17	81	9	94	57	2	2	37	1.26
40827705--40827784	11	6.9	11	72	10	52	57	2	2	37	1.26
40827699--40827757	31	1.9	31	92	0	100	55	1	3	38	1.26
40827737--40827792	28	2.0	29	89	3	87	57	3	1	37	1.27
40834252--40834287	17	2.1	17	89	0	54	22	25	36	16	1.94
40834760--40834811	17	2.9	17	88	8	68	69	0	0	30	0.89
40834759--40834812	8	6.0	9	77	16	58	66	0	0	33	0.92
40834903--40834962	31	1.9	31	82	0	75	40	8	10	41	1.69
40838029--40838071	16	2.6	17	81	3	52	34	0	4	60	1.17
40839235--40839264	11	2.6	11	94	5	51	83	0	6	10	0.81
40839235--40839269	12	3.0	12	87	8	54	77	0	11	11	1.00
40839966--40840116	77	2.0	77	91	0	248	31	6	25	37	1.82
40844284--40844320	16	2.3	16	95	0	65	32	5	0	62	1.18
40849908--40850192	51	5.6	51	80	4	285	29	24	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40852214--40852246	17	1.9	17	100	0	66	66	3	6	24	1.28
40852359--40852404	21	2.1	22	84	11	60	67	8	0	23	1.18
40853007--40853051	21	2.1	22	84	12	58	66	8	0	24	1.20
40854540--40854585	24	1.9	24	86	0	65	21	4	10	63	1.44
40856506--40856566	32	1.9	32	83	6	79	37	9	9	42	1.71
40862322--40862355	8	4.2	8	88	0	50	26	11	23	38	1.89
40864115--40864162	21	2.3	20	80	13	53	14	12	2	70	1.25
40872541--40872575	16	2.1	17	94	5	63	57	8	5	28	1.52
40874224--40874257	15	2.3	15	89	0	50	26	61	5	5	1.42
40878350--40878385	12	3.0	12	91	0	54	55	2	2	38	1.29
40879442--40879482	2	20.5	2	100	0	82	48	0	0	51	1.00
40881090--40881120	6	5.2	6	100	0	62	16	67	16	0	1.23
40888978--40889034	27	2.2	25	81	9	62	52	15	8	22	1.70
40897037--40897073	18	2.1	18	90	10	58	51	13	8	27	1.69
40897121--40897172	27	1.9	27	92	0	86	23	40	0	36	1.55
40909199--40909247	24	2.1	23	84	3	62	51	20	22	6	1.69
40912900--40912928	15	2.0	15	93	6	51	62	0	37	0	0.96
40915757--40915785	6	4.8	6	100	0	58	0	17	48	34	1.47
40915757--40915791	18	1.9	18	88	0	52	2	14	45	37	1.59
40916441--40916495	24	2.3	24	77	0	65	43	0	0	56	0.99
40916975--40916999	12	2.1	12	100	0	50	32	16	8	44	1.76
40926193--40926269	37	2.1	37	100	0	154	51	15	10	22	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40933614--40933644	16	1.9	16	93	0	53	48	9	6	35	1.62
40933762--40933809	24	2.0	25	95	4	89	43	0	0	56	0.99
40949764--40949809	11	3.9	12	77	11	51	15	2	8	73	1.16
40957965--40957997	18	1.9	17	88	11	50	51	0	0	48	1.00
40964015--40964047	17	1.9	17	88	11	50	36	0	9	54	1.32
40964634--40964685	22	2.4	21	84	9	61	30	1	1	65	1.14
40971562--40971893	49	6.8	49	71	14	254	16	25	20	37	1.93
40971548--40971894	98	3.5	98	90	1	518	16	25	20	38	1.93
40972325--40972361	18	2.1	18	94	0	65	59	10	10	18	1.59
40987496--40987533	18	2.1	18	100	0	76	31	7	26	34	1.85
40991312--40991383	37	1.9	37	88	0	108	18	27	13	40	1.88
40996972--40997087	59	2.0	59	87	0	169	21	18	16	43	1.88
40997001--40997183	99	1.8	100	87	4	271	22	19	14	43	1.87
41005529--41005589	29	2.2	27	82	11	70	39	3	3	54	1.33
41007286--41007321	6	6.0	6	93	0	54	52	27	0	19	1.46
41009704--41009763	17	3.5	17	76	0	57	41	3	5	50	1.41
41010294--41010335	21	2.0	22	90	4	68	28	21	11	38	1.89
41010487--41010532	20	2.3	21	81	11	60	47	0	0	52	1.00
41011160--41011218	17	3.6	16	86	6	82	38	0	1	59	1.08
41011181--41011245	27	2.4	27	89	5	96	41	1	3	53	1.25
41011160--41011236	6	13.7	6	73	13	65	40	0	2	57	1.13
41011149--41011225	11	6.9	11	76	15	61	38	0	2	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41012775--41012884	30	3.7	30	93	0	175	39	22	2	35	1.69
41019012--41019917	68	12.9	68	84	9	1003	34	16	19	30	1.94
41019396--41019676	38	7.4	37	71	17	184	34	15	17	33	1.91
41019737--41019852	57	2.0	57	98	0	223	35	14	22	27	1.93
41019794--41019902	37	3.1	37	71	15	122	33	17	21	28	1.96
41020322--41020388	6	11.7	6	76	9	59	38	0	2	58	1.14
41020322--41020387	17	3.9	17	86	4	89	37	0	3	59	1.13
41020311--41020381	11	6.3	11	73	14	56	36	0	4	59	1.17
41021309--41021333	9	2.8	9	100	0	50	20	24	56	0	1.43
41021881--41022043	30	5.4	30	90	0	227	37	20	3	38	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193