genome.fa.s4.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  167  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52018334--52018427	30	3.2	30	86	1	127	53	2	7	37	1.41
52018547--52018617	31	2.3	31	80	4	81	40	14	7	38	1.73
52018624--52018694	26	2.8	25	72	20	65	45	2	0	52	1.15
52018624--52018694	27	2.8	24	75	22	74	45	2	0	52	1.15
52018956--52019019	19	3.2	20	70	29	64	25	0	7	67	1.17
52021891--52021956	30	2.2	30	83	5	80	46	4	6	42	1.48
52031252--52031287	3	12.0	3	100	0	72	33	0	0	66	0.92
52048626--52048663	14	2.7	15	84	12	53	52	13	5	28	1.61
52048584--52048703	59	2.0	59	100	0	240	54	10	6	29	1.59
52048756--52048789	6	5.7	6	100	0	68	50	0	35	14	1.44
52050586--52050610	2	12.5	2	100	0	50	52	0	0	48	1.00
52050610--52050643	2	17.0	2	100	0	68	50	0	50	0	1.00
52053983--52054015	7	4.7	7	100	0	66	30	45	0	24	1.53
52056587--52056801	29	7.4	28	69	16	134	34	3	30	31	1.75
52056587--52056802	58	3.7	58	85	3	256	34	3	30	31	1.75
52056582--52056802	117	1.9	116	85	4	302	33	4	30	31	1.76
52056956--52057019	32	2.0	33	87	9	96	62	4	10	21	1.46
52057111--52057151	17	2.5	17	80	15	50	21	4	2	70	1.18
52058495--52058554	31	1.9	31	82	0	75	55	8	5	31	1.51
52064731--52064795	30	2.2	31	88	5	98	49	10	12	27	1.73
52066224--52066296	33	2.3	34	86	9	100	60	1	2	35	1.20
52066769--52066828	25	2.4	25	85	0	84	46	0	8	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52068628--52068699	24	3.0	24	76	10	67	70	4	16	8	1.27
52068650--52068699	23	2.1	23	85	3	64	72	2	14	12	1.22
52079927--52079985	24	2.5	24	75	10	57	54	5	3	37	1.39
52086089--52086117	14	2.0	15	93	6	51	75	0	0	24	0.80
52092917--52092946	15	1.9	16	93	6	53	43	0	0	56	0.99
52093623--52093663	15	2.5	17	80	11	59	63	2	0	34	1.08
52094906--52095041	63	2.2	63	94	0	236	43	11	16	29	1.82
52095348--52095402	25	2.3	22	76	14	56	50	1	5	41	1.36
52102009--52102073	31	2.1	31	82	5	78	36	7	1	53	1.39
52105009--52105049	15	2.5	17	80	11	59	63	2	0	34	1.08
52106293--52106428	63	2.2	63	94	0	236	43	11	16	29	1.82
52106735--52106789	25	2.3	22	76	14	56	50	1	5	41	1.36
52113394--52113458	31	2.1	31	82	5	78	36	7	1	53	1.39
52117901--52117987	22	4.0	22	92	0	138	14	20	22	41	1.89
52119265--52119303	19	2.0	20	90	5	62	30	0	5	64	1.15
52123963--52123998	18	2.1	18	89	5	56	41	0	25	33	1.55
52124295--52124331	18	2.1	18	89	0	56	48	0	27	24	1.51
52129930--52129966	18	2.1	18	89	0	56	24	27	0	48	1.51
52143350--52143400	18	2.7	18	84	6	66	66	0	7	25	1.18
52143870--52144090	89	2.4	89	79	8	239	30	8	23	38	1.84
52155553--52155606	25	2.2	24	86	3	72	50	1	5	42	1.36
52156196--52156235	21	2.0	19	85	9	53	22	0	2	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52156995--52157041	23	2.0	24	84	12	62	42	2	0	55	1.12
52160418--52160468	23	2.2	23	82	6	59	11	5	5	76	1.14
52161780--52161817	20	1.9	20	89	10	60	23	13	0	63	1.30
52184629--52184705	31	2.5	31	82	2	84	49	9	5	36	1.57
52187558--52187625	31	2.2	31	91	0	109	44	14	8	32	1.76
52188030--52188120	31	3.1	30	80	12	109	41	4	1	52	1.28
52188024--52188125	31	3.3	30	70	21	77	44	4	0	50	1.30
52194205--52194234	2	15.0	2	100	0	60	0	0	50	50	1.00
52194473--52194526	27	2.0	27	85	0	72	38	12	5	42	1.67
52196771--52196804	17	2.0	17	88	11	52	47	0	2	50	1.16
52199781--52199821	6	6.8	6	83	10	57	17	2	14	65	1.37
52202009--52202058	25	1.9	27	92	8	86	24	22	4	50	1.66
52207199--52207257	24	2.5	24	81	10	59	37	3	1	57	1.25
52207222--52207386	58	2.8	57	82	8	172	44	1	2	51	1.25
52207472--52207565	46	2.1	46	84	11	124	38	26	4	30	1.76
52207557--52207616	16	3.8	16	86	0	84	31	25	0	43	1.55
52213488--52213531	8	5.4	8	82	15	54	61	2	0	36	1.09
52213488--52213531	17	2.6	17	85	3	63	61	2	0	36	1.09
52216469--52216825	164	2.2	164	87	1	502	33	18	14	33	1.92
52236937--52236988	21	2.4	21	83	3	68	11	9	9	69	1.38
52238360--52238420	31	2.0	31	87	6	88	42	8	13	36	1.74
52239849--52239874	11	2.4	11	100	0	52	84	0	15	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52244291--52244323	17	1.9	17	93	0	57	0	12	3	84	0.72
52245306--52246378	213	5.0	211	90	3	1689	28	16	19	36	1.93
52245103--52246378	431	3.0	423	89	5	1939	28	16	18	36	1.93
52246137--52246166	12	2.5	12	94	0	51	40	26	6	26	1.81
52246352--52246398	4	11.8	4	95	0	85	48	23	2	25	1.62
52247683--52247717	5	7.0	5	100	0	70	40	0	60	0	0.97
52249774--52249850	30	2.7	28	82	9	93	59	2	5	32	1.33
52255372--52255432	31	2.0	31	87	6	88	34	8	9	47	1.66
52265005--52265061	11	5.2	11	76	0	51	68	14	3	14	1.34
52264972--52265029	31	1.9	30	86	10	82	62	15	3	18	1.47
52265735--52266143	60	7.0	59	69	16	246	28	19	15	36	1.92
52265818--52266143	60	5.5	61	76	13	315	27	19	16	36	1.93
52267818--52268174	30	11.9	30	87	2	484	35	3	23	37	1.71
52269778--52269808	15	2.1	15	100	0	62	12	12	54	19	1.70
52269866--52269935	14	5.3	14	86	13	112	18	14	28	38	1.90
52269866--52269935	26	2.7	26	100	0	140	18	14	28	38	1.90
52269985--52270017	17	1.9	17	100	0	66	54	9	0	36	1.32
52270027--52270072	18	2.6	18	82	6	58	50	2	6	41	1.40
52270003--52270057	24	2.3	24	80	0	65	49	3	3	43	1.37
52269987--52270082	42	2.3	41	81	8	106	51	3	4	41	1.37
52270602--52271998	68	19.9	76	82	8	234	28	20	16	35	1.94
52270595--52270904	159	1.9	159	80	7	356	29	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52270773--52272070	68	18.9	68	91	1	1995	27	20	17	34	1.95
52270773--52272074	274	4.8	274	93	0	2090	27	20	17	34	1.95
52270773--52272070	205	6.3	205	93	0	2046	27	20	17	34	1.95
52281835--52281930	29	3.2	30	72	7	97	34	4	29	32	1.77
52281943--52282299	30	11.9	30	87	2	466	35	2	23	38	1.70
52283978--52284048	14	5.3	14	80	16	96	18	12	28	40	1.87
52283976--52284048	27	2.7	27	95	2	130	19	12	27	41	1.87
52284099--52284131	17	1.9	17	100	0	66	54	9	0	36	1.32
52284141--52284186	18	2.6	18	82	6	58	50	2	6	41	1.40
52284117--52284171	24	2.3	24	80	0	65	49	3	3	43	1.37
52284101--52284196	42	2.3	41	81	8	106	51	3	4	41	1.37
52285227--52285291	28	2.4	28	86	2	87	55	3	4	36	1.36
52285231--52285270	20	1.9	21	85	10	55	60	2	2	35	1.24
52289418--52289573	59	2.7	57	71	5	141	39	6	26	27	1.81
52289585--52289743	30	5.4	30	88	3	216	33	1	26	37	1.68
52291573--52291651	17	4.9	16	81	10	90	56	2	1	39	1.21
52291547--52291646	6	16.8	6	74	13	82	50	1	2	47	1.19
52291572--52291651	31	2.5	32	85	4	108	56	2	1	40	1.21
52291610--52291664	27	2.0	27	89	0	83	54	5	0	40	1.23
52292004--52292269	38	7.4	37	69	19	168	30	18	15	35	1.92
52292067--52292336	76	3.6	76	83	8	351	31	18	15	34	1.92
52291942--52292698	145	5.4	145	85	7	1002	30	19	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52292278--52292395	59	2.0	59	89	0	182	32	20	16	30	1.95
52291999--52292706	204	3.4	208	81	13	785	30	19	16	33	1.94
52292212--52292698	135	3.5	136	79	12	494	30	19	16	33	1.94
52292427--52292692	68	3.9	68	95	0	469	27	21	16	33	1.95
52291942--52292698	280	2.7	281	87	6	1007	30	19	16	33	1.94
52292469--52292655	31	5.7	31	71	15	153	27	20	18	33	1.96
52304316--52304590	30	9.2	30	88	6	391	36	0	23	40	1.58
52304316--52304590	119	2.3	119	88	8	400	36	0	23	40	1.58
52304291--52304604	30	10.5	30	84	7	303	36	0	24	38	1.62
52306391--52306474	6	13.8	6	73	12	64	48	1	2	47	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193