genome.fa.s4.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  57  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17694857--17694904	24	2.0	24	95	0	87	31	25	4	39	1.74
17694863--17694915	24	2.2	24	82	0	61	33	28	3	33	1.75
17709460--17709542	2	41.5	2	97	0	157	49	1	0	49	1.08
17715123--17715173	21	2.4	21	100	0	102	33	29	13	23	1.93
17715841--17716013	51	3.4	51	92	0	274	30	23	14	32	1.94
17722892--17723025	51	2.6	51	90	3	198	29	23	13	32	1.93
17723004--17723049	24	1.9	24	100	0	92	21	28	19	30	1.98
17722953--17723100	75	2.0	75	93	2	253	28	25	14	31	1.95
17723026--17723152	51	2.5	50	91	3	200	28	24	14	32	1.95
17725146--17725333	99	1.9	98	81	5	227	35	5	17	42	1.72
17730088--17730112	13	1.9	13	100	0	50	56	4	0	40	1.18
17730216--17730254	18	2.2	18	86	9	53	46	0	2	51	1.14
17730354--17730387	18	1.9	17	88	5	50	44	0	0	55	0.99
17730990--17731047	29	1.9	30	86	10	82	25	29	15	29	1.96
17731947--17731987	20	2.0	21	86	13	59	63	0	4	31	1.15
17746561--17746604	23	2.0	22	86	4	61	38	0	15	45	1.47
17748914--17749354	192	2.3	191	84	6	554	27	18	26	26	1.98
17756709--17757332	331	1.9	331	95	0	1133	28	13	28	29	1.94
17774310--17774360	17	2.9	17	82	8	50	41	5	3	49	1.45
17783183--17783228	15	2.9	16	78	15	51	4	34	4	56	1.39
17805693--17805735	16	2.7	16	85	0	59	16	9	0	74	1.06
17811873--17811976	26	4.0	26	69	9	77	26	19	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17822609--17822691	38	2.2	39	88	2	123	61	6	12	20	1.51
17830045--17830107	25	2.5	26	78	14	69	71	9	0	19	1.13
17835858--17836139	104	2.7	104	95	1	496	29	27	12	29	1.93
17836875--17836910	9	3.9	9	96	3	63	80	0	0	19	0.71
17859529--17859572	16	2.8	16	86	6	54	63	0	11	25	1.27
17872003--17872043	16	2.6	16	88	3	57	19	12	0	68	1.21
17898057--17898100	23	2.0	22	86	4	61	45	15	0	38	1.47
17909002--17909045	23	2.0	22	86	4	61	45	15	0	38	1.47
17910516--17910558	12	3.5	13	84	12	54	60	0	37	2	1.10
17916553--17916607	27	2.0	27	92	0	92	21	30	12	34	1.91
17923391--17923417	13	2.1	13	100	0	54	44	0	22	33	1.53
17931091--17931137	18	2.6	18	80	10	51	68	6	8	17	1.37
17932309--17932374	26	2.5	26	80	4	80	25	19	24	30	1.98
17951975--17951999	13	1.9	13	100	0	50	24	16	12	48	1.79
17959148--17959209	29	2.0	32	81	9	76	20	8	9	61	1.52
17960525--17960562	18	2.1	18	90	0	58	39	21	18	21	1.93
17966134--17966176	14	2.9	14	77	12	50	23	13	0	62	1.31
17975977--17976032	21	2.7	21	78	13	71	5	33	0	60	1.19
17988703--17988732	2	15.0	2	92	0	51	53	0	0	46	1.00
17989549--17989597	20	2.7	18	77	22	57	51	4	2	42	1.32
17989581--17989656	37	2.1	36	83	11	93	55	5	1	38	1.31
17999441--17999468	9	3.1	9	100	0	56	57	10	0	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18004943--18004993	25	2.0	25	100	0	102	43	21	15	19	1.88
18005234--18005845	123	5.0	123	88	3	874	43	8	10	38	1.69
18016152--18016201	15	3.3	15	74	0	55	28	16	26	30	1.96
18016136--18016197	30	2.1	30	87	0	88	29	16	24	30	1.96
18021109--18021134	11	2.4	11	100	0	52	84	0	15	0	0.62
18024865--18025471	123	4.9	123	91	0	946	42	7	11	38	1.71
18026560--18026607	22	2.1	23	88	3	71	64	6	18	10	1.45
18037827--18037878	24	2.1	25	86	10	72	25	5	3	65	1.32
18048933--18049000	33	2.1	33	97	0	127	23	16	5	54	1.63
18050852--18050981	64	2.0	64	89	0	197	51	12	8	27	1.68
18052005--18052093	38	2.3	38	84	0	106	30	19	17	32	1.95
18052031--18052152	38	3.2	38	88	0	172	28	14	20	36	1.92
18055759--18056135	25	14.8	25	79	5	328	32	25	17	24	1.97
18055759--18056135	50	7.4	50	80	3	376	32	25	17	24	1.97
18055760--18056159	75	5.2	75	81	5	381	33	25	17	24	1.97
18055775--18056116	179	1.9	179	87	2	499	32	24	17	25	1.97
18057802--18057835	14	2.3	15	90	5	52	50	14	0	35	1.44
18063375--18063423	26	2.0	23	84	11	62	20	6	6	67	1.35
18063563--18063619	15	3.7	16	76	6	64	21	1	5	71	1.14
18063563--18063673	15	7.2	15	68	14	57	22	3	4	69	1.22
18067408--18067470	3	20.7	3	96	3	117	68	0	0	31	0.90
18100372--18100433	15	4.1	15	75	8	63	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18100368--18100433	30	2.2	30	83	2	80	22	31	22	22	1.98
18103459--18103502	17	2.5	17	85	3	61	18	18	15	47	1.83
18106020--18106768	45	16.6	44	83	3	780	33	28	13	24	1.94
18107655--18107692	20	1.9	20	88	0	58	18	0	10	71	1.14
18107649--18107700	20	2.5	21	73	17	54	19	0	7	73	1.07
18107676--18107711	15	2.3	16	90	4	56	16	0	5	77	0.94
18107733--18107792	12	4.8	12	72	13	50	21	1	5	71	1.14
18108061--18108116	21	2.8	20	83	8	69	19	0	5	75	1.00
18118384--18118429	8	5.6	8	85	12	58	71	0	28	0	0.86
18118384--18118434	17	3.0	16	76	21	50	70	0	29	0	0.87
18118389--18118433	18	2.5	17	85	7	63	73	0	26	0	0.84
18128328--18128366	20	1.9	21	89	5	62	53	0	7	38	1.30
18129133--18129169	3	12.3	3	100	0	74	0	0	32	67	0.91
18132292--18132316	13	1.9	13	100	0	50	16	0	44	40	1.47
18143359--18143406	24	2.0	24	88	8	71	50	2	8	39	1.44
18143361--18143413	24	2.2	24	83	6	63	52	3	5	37	1.43
18144366--18144408	21	2.2	21	84	15	58	23	6	0	69	1.12
18151570--18151625	29	1.9	29	85	0	76	50	1	1	46	1.22
18158273--18158346	31	2.4	31	84	8	89	32	12	16	39	1.85
18162047--18162134	35	2.5	35	81	0	104	17	14	29	38	1.89
18167347--18167407	13	4.9	11	78	21	59	80	1	1	16	0.88
18167349--18167406	4	14.8	4	78	10	57	79	1	1	17	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18167592--18167637	16	3.0	16	81	12	53	76	2	4	17	1.06
18168435--18168461	14	1.9	14	100	0	54	18	0	0	81	0.69
18175390--18175558	81	2.1	81	88	3	250	30	23	11	34	1.91
18184494--18184546	26	2.0	26	88	0	79	45	18	13	22	1.84
18188341--18188452	25	4.8	24	70	17	74	46	19	5	28	1.72
18188357--18188447	17	5.3	17	71	21	73	45	19	6	28	1.76
18188387--18188441	27	2.0	27	85	7	74	47	18	7	27	1.74
18202866--18202990	36	3.3	40	83	10	181	44	9	21	24	1.82
18204042--18204111	30	2.3	31	87	2	97	32	18	15	32	1.93
18223057--18223126	26	2.7	26	93	0	113	40	17	5	37	1.73
18227237--18227341	36	2.9	36	89	0	165	35	10	19	35	1.86
18228107--18228162	24	2.3	24	93	0	94	48	17	23	10	1.79
18228063--18228198	70	1.9	71	92	3	229	47	15	21	16	1.83
18231424--18231456	16	2.1	16	88	11	50	39	12	18	30	1.87
18239130--18239196	35	2.0	35	85	5	93	56	11	4	26	1.54
18240232--18240280	20	2.4	21	86	3	64	40	14	22	22	1.90
18244271--18244325	20	2.8	20	75	5	58	43	14	20	21	1.87
18244307--18244346	21	1.9	21	85	10	55	37	12	30	20	1.89
18246465--18246529	27	2.4	27	89	2	96	36	3	6	53	1.41
18246465--18246548	27	3.1	27	84	6	82	36	4	5	52	1.47
18246636--18246715	35	2.4	33	74	22	85	46	6	17	30	1.73
18246641--18246711	35	1.9	37	88	8	110	49	7	15	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18248590--18248633	15	2.9	15	89	0	70	34	9	6	50	1.61
18249963--18250093	24	5.5	25	90	7	184	54	9	9	25	1.63
18251542--18251601	24	2.5	24	97	0	111	50	8	15	26	1.72
18252170--18252228	25	2.5	24	82	15	70	40	18	5	35	1.73
18254339--18254961	194	3.3	193	77	9	649	25	26	19	28	1.99
18260201--18260254	25	2.2	24	81	12	65	20	20	7	51	1.70
18262205--18263047	415	2.0	413	86	4	1172	36	13	16	32	1.88
18278700--18278754	21	2.6	21	82	8	58	65	1	29	3	1.20
18279175--18279217	17	2.5	17	81	11	52	18	16	11	53	1.72
18283122--18283159	20	1.9	20	88	0	58	2	13	2	81	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193