genome.fa.s4.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  95  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30643247--30643294	18	2.7	18	86	0	69	25	41	6	27	1.79
30646850--30646889	22	1.9	19	85	14	53	47	10	0	42	1.37
30647493--30647530	19	2.0	19	100	0	76	47	21	10	21	1.80
30651055--30651377	29	11.2	29	74	10	209	36	1	25	36	1.67
30651095--30651347	87	2.9	86	83	5	296	36	2	25	35	1.69
30651496--30651645	82	1.9	81	83	5	196	53	7	14	25	1.66
30653503--30654565	99	10.7	99	74	7	676	16	30	17	35	1.92
30653529--30654556	50	20.8	50	71	6	534	16	30	17	35	1.92
30653529--30654556	199	5.2	198	72	8	565	16	30	17	35	1.92
30653943--30654296	48	7.2	48	70	13	116	15	32	17	34	1.91
30653544--30654556	149	6.8	149	79	3	866	16	30	17	35	1.92
30662548--30662602	14	3.7	15	83	9	69	67	5	7	20	1.35
30662703--30662937	29	8.0	28	77	10	132	34	0	27	37	1.63
30662725--30662983	31	8.6	30	79	7	215	34	0	27	38	1.60
30662728--30662983	61	4.3	60	77	7	243	34	0	26	38	1.60
30666637--30666806	62	2.8	61	82	4	184	31	8	9	50	1.66
30676531--30676590	24	2.5	24	94	0	102	23	10	28	38	1.87
30678224--30678277	23	2.2	25	83	6	67	55	22	0	22	1.44
30680225--30680250	2	13.0	2	100	0	52	0	0	50	50	1.00
30681977--30682021	19	2.4	19	81	7	56	37	0	4	57	1.19
30688111--30688136	4	6.5	4	100	0	52	23	0	0	76	0.78
30689646--30689690	19	2.4	19	81	7	56	37	0	4	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30692029--30692074	20	2.3	21	77	11	51	34	2	0	63	1.07
30693526--30693579	20	2.7	20	82	5	56	33	11	27	27	1.91
30696625--30696664	20	2.0	20	90	0	62	35	7	27	30	1.84
30696629--30696673	20	2.2	20	84	0	54	33	13	26	26	1.93
30696853--30696948	31	3.2	29	81	8	102	54	9	0	36	1.33
30696853--30696973	31	4.0	29	75	10	82	55	8	0	36	1.30
30698737--30698777	22	1.9	21	85	5	55	26	0	2	70	0.99
30700534--30700573	3	13.0	3	84	5	53	32	35	5	27	1.79
30700535--30700572	19	2.0	19	89	0	58	31	36	5	26	1.79
30701806--30701910	46	2.3	46	93	3	176	40	23	3	32	1.73
30701897--30701972	34	2.2	34	90	0	125	28	19	0	51	1.47
30708261--30708293	4	8.2	4	100	0	66	24	0	0	75	0.80
30710426--30710474	24	2.1	24	88	3	73	28	0	12	59	1.34
30718376--30718410	5	7.0	5	100	0	70	60	0	0	40	0.97
30718561--30718610	3	18.3	3	76	19	56	66	0	0	34	0.92
30718556--30718610	15	3.6	16	87	7	69	69	0	0	30	0.89
30718565--30718613	5	9.8	5	86	8	73	65	0	0	34	0.93
30718802--30718913	48	2.6	40	74	20	109	42	3	3	50	1.37
30723532--30723746	24	8.8	24	78	3	232	35	16	27	20	1.94
30727184--30727235	21	2.5	21	81	6	61	40	30	9	19	1.83
30727946--30728346	52	7.7	52	95	1	707	35	26	14	23	1.93
30748513--30748546	13	2.6	13	85	0	50	58	11	0	29	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30750768--30750806	17	2.3	17	86	8	53	76	5	0	17	0.96
30755420--30755463	16	2.7	16	89	10	63	25	0	2	72	0.96
30765629--30765749	26	4.7	26	79	2	127	27	19	26	27	1.99
30765624--30765731	52	2.1	52	87	0	153	28	18	24	28	1.98
30765775--30765851	26	3.0	26	77	7	84	36	18	25	19	1.94
30766289--30766339	27	1.9	27	88	11	79	23	23	15	37	1.93
30766289--30766349	26	2.3	27	83	13	74	22	24	16	36	1.94
30768962--30769203	107	2.3	107	91	1	405	31	22	16	29	1.96
30778536--30778588	21	2.6	19	77	16	52	33	28	9	28	1.88
30779263--30779497	51	4.6	51	81	2	247	31	22	13	31	1.92
30785521--30785585	26	2.5	26	76	0	67	33	12	20	33	1.89
30785646--30785731	26	3.3	27	75	6	88	32	18	26	22	1.97
30787239--30787372	71	1.9	71	83	6	173	26	15	20	38	1.92
30787309--30787431	64	1.9	64	83	6	160	27	13	17	40	1.88
30789550--30789757	107	1.9	109	85	5	287	40	16	13	28	1.87
30800175--30800270	41	2.3	41	94	0	174	37	28	6	28	1.81
30803726--30803762	4	9.2	4	100	0	74	24	0	27	48	1.51
30806174--30806229	27	2.1	27	89	0	85	50	8	16	25	1.74
30811672--30811718	16	3.0	16	93	3	78	59	0	0	40	0.97
30833201--30833231	14	2.2	14	94	0	53	48	0	0	51	1.00
30837099--30837146	17	2.7	18	81	15	55	62	0	0	37	0.95
30837386--30837434	26	1.9	26	84	12	66	59	0	12	28	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30837893--30837917	2	12.5	2	100	0	50	52	0	0	48	1.00
30846065--30846139	26	2.9	26	78	5	73	61	4	1	33	1.23
30846289--30846315	13	2.1	13	100	0	54	62	0	0	37	0.95
30846871--30846933	27	2.4	27	83	2	83	39	3	0	57	1.15
30847392--30847418	2	13.5	2	100	0	54	51	0	0	48	1.00
30856803--30857174	50	7.5	48	78	8	295	18	24	16	39	1.91
30856793--30857271	49	9.7	50	75	6	352	18	24	17	39	1.91
30856885--30857276	198	2.0	200	81	5	472	18	24	16	40	1.91
30857708--30857744	18	2.1	18	94	0	65	59	10	10	18	1.59
30870547--30870586	6	6.5	6	88	5	53	22	0	0	77	0.77
30870548--30870586	16	2.5	16	83	4	53	23	0	0	76	0.78
30870549--30870585	19	1.9	19	88	0	56	24	0	0	75	0.80
30875970--30875996	13	2.1	13	100	0	54	29	14	22	33	1.94
30882341--30882388	25	2.0	24	83	4	60	45	6	2	45	1.40
30893089--30893130	9	4.6	9	87	3	57	23	0	4	71	1.05
30893090--30893151	28	2.2	28	82	5	72	24	1	4	69	1.17
30895894--30895923	14	2.2	14	94	5	53	36	10	23	30	1.87
30900400--30900438	21	1.9	20	84	5	51	66	10	10	12	1.44
30908873--30908941	11	5.8	12	72	14	63	42	2	1	53	1.24
30908873--30908941	6	11.7	6	73	14	63	42	2	1	53	1.24
30908873--30908941	17	3.9	17	76	16	61	42	2	1	53	1.24
30908858--30908941	42	2.0	42	86	4	116	41	3	2	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30908910--30908949	17	2.4	16	84	12	53	40	5	5	50	1.46
30910876--30910968	29	3.2	29	71	14	82	35	27	1	35	1.65
30910816--30911100	59	4.8	59	77	6	267	32	29	2	35	1.72
30910994--30911094	29	3.5	27	76	14	85	31	29	3	34	1.76
30910780--30911101	118	2.7	119	74	8	325	32	28	3	35	1.73
30910994--30911123	29	4.4	28	71	14	84	33	28	4	33	1.78
30923311--30924154	200	4.2	200	91	1	1325	35	21	23	19	1.95
30923311--30924159	401	2.1	401	91	1	1364	35	21	23	19	1.95
30924537--30924583	11	4.0	11	83	10	58	46	0	0	53	1.00
30924537--30924605	6	11.7	6	76	14	72	43	1	1	53	1.18
30924537--30924605	17	3.9	17	78	16	70	43	1	1	53	1.18
30924522--30924605	42	2.0	42	86	4	116	42	2	2	52	1.27
30924574--30924613	17	2.4	16	84	12	53	40	5	5	50	1.46
30926490--30926794	29	10.5	28	68	20	132	34	29	2	32	1.73
30926490--30926829	30	11.6	30	67	18	134	34	30	3	32	1.74
30926487--30926801	117	2.7	117	87	2	429	33	30	2	33	1.73
30926487--30926829	59	5.9	58	74	9	279	34	30	3	32	1.74
30931167--30931207	11	3.9	11	87	6	59	51	0	0	48	1.00
30931151--30931245	26	3.5	26	78	12	100	52	0	2	45	1.12
30932192--30932287	9	11.2	9	71	22	82	48	0	0	51	1.00
30932169--30932285	29	4.4	29	74	25	109	47	0	0	52	1.00
30932192--30932257	19	3.5	19	81	6	73	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30932162--30932237	27	2.7	29	84	13	97	48	0	0	51	1.00
30932190--30932295	47	2.2	49	91	6	173	49	0	0	50	1.07
30932248--30932289	20	2.0	22	90	9	70	52	0	0	47	1.00
30932856--30932961	29	3.7	28	82	12	126	50	0	0	48	1.13
30933699--30933733	18	1.9	18	94	0	61	45	2	0	51	1.16
30938749--30938795	16	2.9	16	72	15	51	68	2	0	29	1.02
30940783--30940847	21	3.1	21	74	12	62	66	4	6	23	1.33
30940846--30940888	19	2.4	17	88	7	59	74	4	2	18	1.10
30941453--30941493	19	2.1	20	86	4	57	17	4	7	70	1.28
30946650--30946766	53	2.2	53	81	6	130	38	12	10	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193