genome.fa.s4.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  34  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10551417--10551507	20	4.6	20	74	8	60	39	6	12	41	1.68
10552886--10552923	20	1.9	20	84	10	51	26	5	2	65	1.27
10565844--10565901	20	2.9	21	80	10	59	29	10	8	51	1.65
10566727--10566863	70	2.0	70	88	0	202	30	26	20	22	1.98
10566823--10566912	28	3.2	28	84	3	119	25	27	20	26	1.99
10570732--10570778	22	2.1	22	96	0	85	38	25	8	27	1.85
10576858--10576940	4	20.5	4	80	7	78	68	2	3	25	1.18
10576858--10576923	17	4.1	17	82	3	75	71	1	4	22	1.13
10576911--10576962	22	2.4	22	87	9	72	63	3	0	32	1.12
10582872--10583303	59	7.3	59	90	1	643	34	5	28	30	1.81
10582936--10583274	30	11.4	30	67	14	114	35	5	27	30	1.81
10583297--10583452	30	5.2	30	92	0	242	34	1	22	41	1.65
10582878--10583362	177	2.7	172	84	7	591	35	5	27	32	1.79
10585301--10585393	17	5.5	16	76	17	73	50	2	3	44	1.30
10585317--10585393	11	6.8	11	73	10	66	50	2	3	42	1.34
10585736--10585778	19	2.4	18	81	11	52	39	0	34	25	1.56
10594479--10594870	59	6.7	58	79	9	345	36	5	25	32	1.80
10594463--10594869	118	3.5	115	78	11	423	36	5	24	33	1.80
10594512--10595005	29	16.6	27	67	20	129	37	4	24	33	1.77
10594444--10594680	29	8.0	30	69	16	124	34	6	26	32	1.82
10594776--10595073	30	9.9	30	69	20	117	36	3	24	34	1.72
10594834--10594905	36	2.0	36	86	7	103	43	4	20	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10594775--10594965	94	2.0	95	89	3	296	40	3	22	34	1.70
10594716--10595001	153	1.9	153	90	0	455	38	3	23	34	1.73
10594869--10595069	59	3.4	58	75	9	176	35	3	24	36	1.74
10595587--10595641	23	2.4	23	93	0	92	10	34	30	23	1.89
10599501--10599562	28	2.2	28	78	18	67	41	17	4	35	1.71
10600097--10600131	4	8.8	4	93	0	61	48	22	2	25	1.64
10600849--10600938	31	2.8	31	83	3	117	51	10	13	25	1.72
10601190--10601284	20	4.8	20	68	10	59	43	7	9	40	1.65
10601175--10601264	40	2.2	40	80	0	108	41	6	11	41	1.67
10601754--10601789	17	2.1	17	89	0	54	44	2	0	52	1.15
10602392--10603759	685	2.0	683	99	0	2709	38	14	20	26	1.91
10604378--10604485	29	3.7	29	82	8	146	34	28	5	31	1.80
10604465--10604510	21	2.2	21	88	3	67	36	34	0	28	1.58
10604661--10604722	28	2.2	28	88	11	92	32	32	9	25	1.88
10604661--10604733	28	2.6	27	85	10	76	30	31	9	28	1.89
10606714--10606751	20	1.9	20	84	10	51	26	5	2	65	1.27
10607600--10607634	14	2.4	14	90	4	52	51	2	0	45	1.16
10612817--10612865	21	2.2	24	85	10	68	44	18	4	32	1.68
10620121--10620154	16	2.0	17	88	11	52	52	0	38	8	1.33
10622518--10622682	60	2.8	57	77	12	163	24	15	10	49	1.76
10622908--10622962	17	3.6	15	77	22	53	47	3	1	47	1.30
10624779--10624998	58	3.8	58	79	6	241	33	31	2	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10624779--10624926	29	5.1	29	67	10	106	34	33	2	29	1.69
10624779--10624998	115	1.9	116	84	4	293	33	31	2	32	1.71
10624780--10625028	58	4.3	57	77	12	231	32	31	2	33	1.71
10625117--10625170	20	2.6	19	78	21	56	20	12	7	59	1.58
10626486--10626526	20	2.0	20	85	0	55	31	4	14	48	1.65
10626539--10626572	10	3.4	10	84	15	52	52	2	8	35	1.47
10626540--10626646	20	5.3	20	73	11	67	42	3	11	42	1.58
10626486--10626626	40	3.5	40	69	1	104	39	4	10	45	1.58
10626620--10626703	20	4.2	20	75	11	73	44	3	9	42	1.54
10626620--10626707	40	2.2	40	78	8	99	42	3	10	44	1.55
10626738--10626776	20	2.0	20	89	0	60	43	5	15	35	1.69
10626847--10626889	19	2.3	19	87	0	59	41	6	11	39	1.68
10626854--10626943	20	4.6	20	76	1	67	38	5	14	41	1.69
10626847--10626938	40	2.4	39	76	10	98	41	6	15	36	1.73
10626920--10626965	20	2.3	20	85	7	67	28	2	28	41	1.68
10629906--10630094	106	1.8	105	88	4	294	39	14	10	35	1.80
10635941--10636019	27	2.9	27	98	1	149	36	2	11	49	1.52
10636480--10636545	31	2.1	31	85	0	87	50	6	9	34	1.59
10641111--10641149	20	1.9	21	89	5	62	64	0	0	35	0.94
10641825--10641872	17	3.0	17	76	17	57	47	0	0	52	1.00
10641828--10641875	14	3.1	16	79	14	55	45	0	0	54	0.99
10646140--10646178	20	2.0	20	90	10	62	51	12	0	35	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10658586--10658653	32	2.1	32	91	5	111	26	7	7	58	1.51
10658573--10658651	32	2.3	35	77	18	94	22	6	7	63	1.44
10659084--10659139	26	2.2	26	81	9	62	46	10	0	42	1.38
10661650--10661699	23	2.3	22	89	6	75	46	10	24	20	1.81
10661887--10661969	37	2.2	39	80	10	91	42	2	10	44	1.52
10661943--10662027	38	2.2	39	84	12	113	31	2	11	54	1.50
10662774--10662867	49	1.9	49	89	4	145	37	6	17	39	1.75
10662844--10662890	23	2.0	23	83	0	58	42	12	8	36	1.74
10663895--10663945	24	2.0	24	85	7	66	39	1	0	58	1.09
10670604--10670714	57	1.9	57	89	7	172	65	6	4	23	1.34
10672723--10672781	30	2.1	28	84	9	75	28	16	16	37	1.92
10680522--10680562	17	2.3	18	87	8	66	39	14	7	39	1.74
10680774--10680847	30	2.5	30	86	8	98	17	21	8	52	1.70
10680968--10681011	18	2.4	19	88	7	72	43	13	6	36	1.71
10681452--10681494	16	2.7	16	79	13	52	39	11	4	44	1.62
10681763--10681825	27	2.3	27	94	0	108	15	31	33	19	1.93
10681764--10681844	27	3.0	27	83	3	83	19	30	28	20	1.97
10681866--10681910	15	2.9	15	76	3	54	66	11	0	22	1.22
10682144--10682182	5	8.0	5	88	5	62	64	0	0	35	0.94
10682194--10682251	27	2.1	27	96	0	107	15	20	41	22	1.90
10682289--10682363	25	3.0	25	100	0	150	48	4	20	28	1.67
10685207--10685256	26	1.9	26	87	0	73	30	0	10	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10685322--10685368	6	7.8	6	90	9	78	65	17	2	14	1.36
10685795--10685819	6	4.2	6	100	0	50	16	32	36	16	1.90
10687769--10687796	13	2.2	13	100	0	56	50	0	0	50	1.00
10687792--10687835	18	2.6	17	85	7	54	52	2	2	43	1.26
10689203--10689233	2	15.5	2	100	0	62	0	48	0	51	1.00
10692448--10692472	13	1.9	13	100	0	50	24	8	0	68	1.16
10693520--10694592	423	2.6	418	78	7	1068	22	17	8	51	1.72
10699495--10699549	29	1.9	28	85	3	74	45	7	1	45	1.41
10710244--10710301	26	2.2	26	100	0	116	41	3	22	32	1.71
10712766--10712940	84	2.1	84	81	6	201	32	17	6	44	1.73
10714211--10714272	23	2.4	26	87	12	85	45	6	3	45	1.45
10728578--10728612	17	2.0	18	88	5	54	37	31	11	20	1.88
10736979--10737088	31	3.6	30	70	19	84	22	17	15	44	1.86
10736922--10737093	60	2.9	60	86	3	222	21	16	13	47	1.82
10737344--10737403	30	2.0	30	87	6	86	43	13	18	25	1.86
10738286--10738346	23	2.7	22	78	14	61	57	4	4	32	1.41
10739944--10739978	17	2.0	18	88	5	54	45	8	0	45	1.34
10740679--10740731	13	4.1	13	76	9	54	37	24	3	33	1.74
10752722--10752779	12	4.8	12	79	12	55	32	1	1	63	1.14
10753694--10753883	30	6.4	29	83	7	199	37	21	3	37	1.69
10753694--10753883	59	3.2	59	79	11	210	37	21	3	37	1.69
10764005--10764031	3	9.0	3	100	0	54	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10765292--10765370	42	1.9	40	89	5	122	50	12	24	12	1.75
10766406--10766572	85	2.0	85	86	0	235	37	17	23	22	1.94
10766610--10766770	48	3.6	45	72	17	140	36	15	22	26	1.94
10766325--10766908	208	2.8	208	89	2	864	38	17	21	22	1.93
10766614--10766775	85	1.9	85	89	2	254	36	16	22	24	1.94
10766825--10766962	48	2.9	48	86	2	170	41	15	21	21	1.90
10769888--10770325	195	2.2	194	81	5	483	28	19	25	26	1.99
10771078--10771129	21	2.5	21	75	6	52	26	11	28	32	1.91
10772569--10772699	30	4.5	29	80	9	124	38	17	1	42	1.59
10772569--10772706	59	2.3	58	81	8	154	37	19	1	41	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193