genome.fa.s4.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  98  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31693926--31694144	29	7.5	27	68	21	86	36	4	27	31	1.77
31693935--31694147	30	7.2	29	67	21	104	35	4	28	31	1.78
31695658--31695704	17	2.8	16	87	6	58	42	2	2	53	1.25
31695694--31695734	17	2.4	18	76	12	50	56	7	0	36	1.27
31698584--31698637	27	2.0	27	100	0	108	18	25	22	33	1.97
31700102--31700439	166	2.0	166	96	0	622	39	13	14	33	1.85
31704673--31704920	30	8.3	29	74	10	146	33	21	3	41	1.69
31704731--31704932	89	2.3	91	88	4	295	33	19	2	44	1.66
31704775--31704947	60	2.9	58	75	13	163	37	17	1	43	1.57
31716632--31717471	38	21.8	39	70	14	307	31	23	18	25	1.97
31716632--31717471	77	10.9	77	82	6	945	31	23	18	25	1.97
31716632--31717471	154	5.4	153	87	3	1136	31	23	18	25	1.97
31716667--31717450	309	2.5	309	90	2	1213	32	23	18	26	1.97
31719250--31719415	30	5.6	29	75	12	115	32	21	1	45	1.60
31719225--31719448	59	3.8	60	76	11	160	32	20	3	44	1.67
31719274--31719448	30	5.9	29	79	7	138	33	20	1	45	1.61
31719235--31719467	60	3.9	58	76	9	184	32	19	3	45	1.65
31719280--31719433	30	5.2	29	78	8	141	34	20	1	44	1.60
31721312--31721359	9	5.1	9	78	9	51	8	12	0	79	0.94
31721312--31721347	19	1.9	18	94	5	63	8	8	0	83	0.82
31721316--31721359	19	2.3	18	81	11	52	9	13	0	77	0.99
31728590--31728725	31	4.4	29	73	16	89	41	9	11	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31728608--31728718	31	3.7	29	76	10	98	40	10	11	36	1.77
31732878--31732974	8	12.2	8	77	15	62	42	1	1	55	1.13
31732848--31732932	34	2.5	34	90	5	127	47	3	1	48	1.26
31732923--31732984	20	3.1	21	86	9	85	41	0	0	58	0.98
31732923--31732987	28	2.4	28	84	7	89	41	0	0	58	0.98
31732974--31733055	34	2.4	34	82	6	96	48	10	1	39	1.46
31733036--31733079	8	5.5	8	83	0	52	36	2	2	59	1.23
31733160--31733231	33	2.1	34	94	2	128	48	9	2	38	1.51
31733129--31733214	41	2.1	41	87	8	122	47	6	3	41	1.47
31735634--31735983	43	8.2	42	79	5	279	28	17	24	29	1.97
31738624--31738655	14	2.3	14	94	0	55	71	0	3	25	1.00
31738806--31739179	29	13.1	28	79	6	281	35	4	26	33	1.76
31738868--31739175	86	3.6	83	80	8	325	37	3	25	34	1.73
31738835--31739177	57	6.0	58	76	13	284	36	4	25	33	1.75
31739417--31739489	35	2.1	35	100	0	146	47	16	2	32	1.61
31740891--31740934	17	2.6	17	88	0	61	43	0	6	50	1.29
31740908--31740949	17	2.5	17	88	0	57	42	4	2	50	1.36
31740940--31740974	17	2.1	17	88	0	52	60	2	0	37	1.12
31741595--31741743	77	1.9	78	87	1	219	25	20	28	24	1.99
31741478--31741738	39	6.7	39	75	9	210	24	21	29	23	1.99
31741478--31741738	116	2.2	117	84	0	335	24	21	29	23	1.99
31753481--31753514	14	2.3	15	90	10	52	58	5	8	26	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31753661--31753875	28	7.6	29	79	12	198	34	1	26	37	1.65
31753671--31753875	58	3.6	57	79	8	220	35	1	26	37	1.66
31755589--31755674	6	15.0	6	70	13	65	55	2	2	39	1.25
31755591--31755676	17	5.1	17	85	0	118	56	2	2	38	1.25
31765297--31765347	19	2.7	20	74	17	54	17	19	9	52	1.72
31765355--31765436	20	4.2	20	76	16	66	13	14	8	63	1.51
31765660--31765732	23	3.1	23	96	3	137	35	0	0	64	0.94
31765824--31765850	12	2.2	12	100	0	54	29	0	0	70	0.88
31766104--31766154	20	2.5	20	90	0	75	47	13	15	23	1.82
31766314--31766372	20	3.0	20	76	18	68	52	1	10	35	1.45
31766531--31766595	30	2.2	30	83	8	80	49	4	1	44	1.32
31770052--31770142	38	2.3	40	90	3	141	30	21	14	32	1.93
31771669--31772042	30	12.7	30	77	10	315	36	24	1	36	1.67
31771679--31772041	59	6.2	58	76	9	331	36	24	1	37	1.67
31771754--31772042	29	10.0	29	77	10	270	35	25	2	36	1.68
31776303--31776383	15	5.4	15	80	0	90	27	18	27	27	1.98
31776303--31776370	30	2.3	30	89	0	100	27	20	25	26	1.99
31776505--31776567	18	3.5	18	73	0	54	30	31	7	30	1.86
31782248--31782292	21	2.2	20	84	11	56	51	4	6	37	1.49
31784252--31784305	19	3.0	19	65	15	51	24	20	20	35	1.96
31784247--31784313	35	1.9	35	90	0	107	26	19	20	32	1.97
31785358--31785406	22	2.3	22	85	3	64	20	20	42	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31799205--31799247	22	2.0	22	85	0	59	60	6	9	23	1.51
31799242--31799284	22	2.0	22	100	0	86	60	23	6	9	1.51
31801781--31801809	13	2.1	14	93	6	51	10	17	0	72	1.11
31808181--31808224	12	3.5	13	81	15	56	0	20	0	79	0.73
31808179--31808238	26	2.2	28	85	11	90	3	20	0	76	0.92
31808672--31808823	75	2.0	75	97	0	286	39	22	11	26	1.88
31812328--31812362	17	2.1	17	100	0	70	37	17	28	17	1.92
31823904--31824132	41	5.6	41	82	2	230	32	17	24	24	1.97
31823904--31824143	82	3.0	81	83	3	277	32	17	25	25	1.97
31824033--31824146	40	2.8	40	77	0	138	33	17	23	25	1.96
31826781--31826843	15	4.3	14	75	16	65	28	14	20	36	1.92
31826781--31826843	30	2.1	29	85	2	81	28	14	20	36	1.92
31827666--31827733	15	4.5	15	81	7	84	36	14	10	38	1.81
31827676--31827753	29	2.6	30	84	6	97	33	14	15	37	1.87
31833921--31833962	21	1.9	23	85	9	61	45	0	14	40	1.45
31838315--31838353	20	2.0	20	89	0	60	48	10	23	17	1.78
31838360--31838405	19	2.4	18	82	7	56	71	6	13	8	1.29
31841396--31841462	33	2.0	33	97	0	125	31	31	14	22	1.94
31841639--31841676	19	2.0	19	100	0	76	47	10	15	26	1.78
31848635--31848847	108	2.0	108	84	7	281	39	13	13	33	1.84
31850577--31851189	49	12.5	50	79	5	466	21	23	14	39	1.90
31850577--31851169	98	6.1	98	81	4	572	21	23	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31850715--31851169	246	1.8	246	88	0	685	21	22	15	39	1.91
31850713--31851258	49	11.1	49	81	6	177	21	23	15	39	1.91
31851159--31851258	50	2.0	50	86	3	139	23	26	17	34	1.96
31850713--31851239	246	2.1	246	83	3	675	21	23	15	39	1.92
31851183--31851358	50	3.5	50	79	5	142	22	27	15	34	1.95
31851363--31851609	99	2.5	98	74	12	238	25	20	17	37	1.94
31854348--31854405	7	8.6	7	78	14	52	3	13	0	82	0.79
31854349--31854417	6	11.8	6	77	13	65	2	15	0	81	0.81
31854343--31854420	22	3.5	22	78	14	81	2	15	0	82	0.79
31854343--31854417	17	4.5	16	78	17	73	2	16	0	81	0.80
31854345--31854418	28	2.6	28	81	16	89	2	16	0	81	0.81
31858481--31858688	109	1.9	110	88	1	319	40	15	12	32	1.84
31858495--31858714	109	2.1	107	85	3	291	40	15	11	32	1.83
31858701--31858745	20	2.2	20	84	7	56	46	2	0	51	1.13
31858936--31858987	3	17.0	3	96	4	95	65	0	1	32	1.04
31860635--31860671	18	2.1	18	94	0	65	45	0	13	40	1.43
31860813--31860840	9	3.1	9	100	0	56	46	0	0	53	1.00
31861135--31861172	17	2.1	19	85	9	53	50	0	0	50	1.00
31880291--31880338	23	2.1	23	92	0	78	18	22	8	50	1.74
31884528--31884681	30	5.2	30	75	10	136	35	24	4	35	1.76
31884504--31884680	60	3.0	60	75	9	184	37	22	4	36	1.74
31887323--31888127	402	2.0	403	97	0	1513	34	19	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31891689--31891726	14	2.9	14	84	7	53	39	23	10	26	1.87
31900577--31900613	14	2.8	14	84	8	51	86	0	13	0	0.57
31900577--31900611	18	1.9	18	88	11	54	85	0	14	0	0.59
31900577--31900616	20	2.0	20	90	0	62	85	0	15	0	0.61
31909794--31909912	50	2.4	50	97	0	220	37	21	20	20	1.94
31910030--31910256	51	4.5	50	71	12	169	35	19	19	25	1.95
31910029--31910328	101	3.0	99	76	10	275	36	19	19	25	1.94
31911795--31912021	30	7.6	30	81	9	153	38	20	4	36	1.74
31911862--31912021	60	2.6	60	80	3	178	38	23	3	33	1.73
31912078--31912114	16	2.2	17	90	4	58	13	18	0	67	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193