genome.fa.s4.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  51  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15625827--15625888	17	3.9	17	72	18	53	50	0	0	50	1.00
15625847--15625922	30	2.8	26	76	17	75	51	0	0	48	1.00
15625827--15625914	46	1.9	46	88	4	133	50	0	0	50	1.00
15625863--15625917	16	3.6	16	68	9	51	52	0	0	47	1.00
15625856--15625920	30	2.2	30	88	2	105	47	0	0	52	1.00
15626819--15626880	29	2.1	29	88	5	90	56	0	0	43	0.99
15626797--15626883	45	2.0	42	86	6	120	54	0	0	45	1.00
15626831--15626891	30	2.1	30	90	6	99	50	0	0	49	1.00
15628754--15629174	50	8.4	50	70	7	212	25	17	19	37	1.93
15628746--15629174	100	4.3	99	83	2	482	26	17	18	37	1.94
15628895--15629172	150	1.9	149	81	6	337	25	17	19	37	1.93
15629901--15630144	127	1.9	127	84	4	323	20	26	14	38	1.91
15638976--15639019	15	2.9	15	80	12	54	4	20	0	75	0.98
15645987--15646043	29	1.9	29	82	3	69	61	7	10	21	1.52
15648687--15648762	35	2.2	35	85	4	100	40	21	21	17	1.91
15664784--15664915	37	3.6	37	82	4	142	28	13	26	31	1.94
15671506--15671556	24	2.1	24	92	0	84	25	9	5	58	1.52
15680641--15680666	6	4.3	6	100	0	52	84	15	0	0	0.62
15701292--15701333	20	2.2	19	83	12	50	52	2	0	45	1.13
15709009--15709059	26	2.0	25	96	3	93	50	5	0	43	1.26
15711194--15711230	17	2.2	18	85	9	51	56	0	18	24	1.41
15719373--15719415	3	14.3	3	100	0	86	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15719334--15719497	82	2.0	82	95	0	292	52	3	14	29	1.59
15719461--15719509	3	16.3	3	100	0	98	67	0	0	32	0.91
15726490--15726525	3	12.0	3	100	0	72	66	0	0	33	0.92
15726524--15726555	3	10.7	3	100	0	64	34	0	0	65	0.93
15728710--15728735	11	2.4	11	100	0	52	38	0	0	61	0.96
15729088--15729156	24	2.9	24	93	0	120	43	15	14	26	1.85
15729887--15730048	87	1.9	87	89	2	254	35	21	8	33	1.84
15730165--15730209	20	2.3	19	85	11	56	66	0	4	28	1.11
15730164--15730217	18	2.8	20	75	13	60	64	0	3	31	1.11
15730481--15730519	20	2.0	20	90	10	62	25	5	5	64	1.35
15730482--15730525	20	2.2	20	84	8	54	27	4	4	63	1.33
15730546--15730586	19	2.1	20	86	4	57	43	4	2	48	1.37
15730570--15730624	18	3.0	19	76	7	51	38	1	0	60	1.08
15731867--15731911	2	22.0	2	95	4	81	2	48	0	48	1.13
15733763--15733859	27	3.6	27	72	10	99	36	26	15	21	1.93
15733732--15733862	54	2.4	54	85	0	172	33	29	15	22	1.94
15733856--15734200	171	2.0	171	93	1	593	33	20	20	26	1.97
15737109--15737145	18	2.1	18	94	0	65	54	13	5	27	1.61
15739163--15739207	17	2.6	17	82	6	56	40	2	2	55	1.24
15741049--15741119	30	2.4	30	78	0	79	36	21	1	40	1.62
15741101--15741135	17	2.0	18	94	5	63	45	17	5	31	1.71
15741121--15741379	29	8.9	30	75	15	181	35	26	1	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15741121--15741258	30	4.8	29	83	11	160	36	25	2	36	1.68
15741538--15741575	19	2.0	20	84	5	51	21	15	13	50	1.78
15741629--15741817	98	1.9	97	90	3	299	26	18	15	39	1.91
15743191--15743243	21	2.5	20	79	14	54	45	0	1	52	1.11
15744664--15744714	26	1.9	27	84	11	70	62	3	15	17	1.47
15748855--15748880	6	4.3	6	100	0	52	84	0	0	15	0.62
15748910--15748967	30	2.0	29	86	3	80	24	24	32	18	1.97
15757814--15757861	20	2.4	21	82	6	55	54	8	4	33	1.50
15758453--15758485	3	11.0	3	100	0	66	33	0	0	66	0.92
15758759--15758956	71	2.8	71	84	2	281	41	19	7	31	1.78
15763700--15763734	16	2.1	17	94	5	63	51	11	11	25	1.71
15765048--15765090	22	2.0	22	100	0	86	4	23	13	58	1.55
15784773--15784818	21	2.2	19	79	20	56	30	8	23	36	1.85
15814426--15814459	17	2.0	17	100	0	68	35	17	11	35	1.87
15816939--15817039	35	2.9	35	94	4	168	37	11	0	50	1.39
15817584--15817611	14	2.0	14	100	0	56	21	14	28	35	1.92
15817681--15817719	3	13.0	3	94	0	69	0	30	2	66	1.05
15818880--15818921	14	3.0	14	76	13	50	21	4	2	71	1.16
15822547--15822578	15	2.1	16	94	5	57	12	6	3	78	1.06
15827276--15827309	15	2.2	16	90	10	54	0	38	0	61	0.96
15844318--15844430	24	4.7	24	93	0	172	32	23	26	16	1.96
15846779--15846854	17	4.5	17	76	3	73	42	1	5	51	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15846805--15846864	6	10.3	6	72	13	54	48	1	1	48	1.21
15848858--15849346	59	8.3	59	87	2	666	32	30	2	33	1.73
15848858--15849346	117	4.2	118	87	2	666	32	30	2	33	1.73
15848858--15849330	176	2.7	174	88	2	687	33	30	2	33	1.73
15852675--15852765	20	4.6	20	75	4	76	30	6	14	48	1.69
15857305--15857353	2	24.5	2	100	0	98	0	48	0	51	1.00
15858307--15858370	22	3.0	22	75	13	80	28	14	4	53	1.60
15862848--15863013	60	2.8	58	85	7	208	22	12	12	52	1.72
15863222--15863302	31	2.6	32	84	9	105	48	4	13	33	1.64
15863666--15863700	16	2.2	16	90	10	54	2	14	0	82	0.77
15870329--15870392	6	10.5	6	93	3	83	0	57	0	42	0.98
15870336--15870371	13	2.8	13	91	4	56	0	63	0	36	0.94
15870336--15870383	25	1.9	25	86	0	69	0	60	0	39	0.97
15870330--15870389	31	1.9	31	89	0	93	0	58	0	41	0.98
15871185--15871226	11	3.8	11	84	9	59	54	0	0	45	0.99
15871210--15871248	17	2.4	17	91	8	64	48	0	0	51	1.00
15871590--15871634	12	3.8	12	96	0	81	20	17	17	44	1.87
15871588--15871649	12	5.2	12	83	9	58	24	16	16	43	1.87
15871588--15871646	24	2.5	23	86	8	82	22	16	16	44	1.87
15872032--15872071	18	2.3	17	87	12	55	77	0	22	0	0.77
15872350--15872381	11	2.9	11	100	0	64	46	25	0	28	1.53
15892482--15892549	24	2.8	24	86	0	91	25	7	10	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15894472--15894543	24	3.1	23	82	11	85	23	9	6	59	1.53
15896100--15896151	19	2.8	18	75	18	61	51	11	1	34	1.49
15896063--15896146	44	1.9	43	80	7	98	51	11	2	34	1.52
15896533--15896610	39	2.0	39	94	0	138	35	19	8	35	1.83
15900377--15900440	26	2.5	26	92	2	103	29	21	14	34	1.93
15905554--15905649	38	2.6	38	80	8	115	34	23	11	30	1.90
15906472--15906502	16	1.9	16	93	0	53	22	16	0	61	1.34
15907649--15907689	20	2.0	20	100	0	82	29	9	21	39	1.86
15923148--15923215	26	2.6	26	83	0	91	22	22	23	32	1.98
15925798--15925850	26	2.0	26	85	10	72	45	0	1	52	1.11
15939390--15939475	37	2.3	38	82	9	106	31	16	25	26	1.96
15942094--15942126	17	2.0	17	88	5	50	27	15	15	42	1.86
15945322--15945366	23	1.9	24	86	13	67	46	0	46	6	1.29
15948103--15948127	13	1.9	13	100	0	50	0	8	12	80	0.92
15952503--15952546	23	2.0	22	86	4	61	38	0	15	45	1.47
15954664--15954753	38	2.4	37	77	5	90	31	21	21	26	1.98
15957180--15957226	24	2.0	24	83	8	60	25	12	10	51	1.72
16005603--16005637	17	2.1	17	88	0	52	40	5	22	31	1.78
16021748--16021781	18	1.9	17	88	5	50	23	11	8	55	1.63
16023072--16023118	18	2.6	18	86	6	60	40	21	19	19	1.92
16027414--16027461	24	2.0	24	84	12	62	16	8	4	70	1.27
16029169--16029220	27	1.9	27	88	7	79	69	1	28	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16029627--16029664	17	2.2	17	90	0	58	26	10	10	52	1.68
16036143--16036203	17	3.5	17	81	2	68	49	16	18	16	1.80
16036248--16036280	12	2.6	13	85	4	50	69	12	3	15	1.30
16042258--16042295	18	2.1	18	85	9	51	23	18	28	28	1.98
16062077--16062116	21	2.0	20	90	5	62	72	7	2	17	1.19
16062404--16062463	19	3.2	19	79	13	70	75	0	3	21	0.95
16062407--16062465	15	3.6	16	73	22	52	72	0	3	23	0.99
16062404--16062479	8	8.9	8	72	13	53	76	1	2	19	0.98
16064342--16064810	50	9.3	50	65	15	178	28	20	16	34	1.94
16064356--16065120	100	7.6	100	72	6	418	28	19	16	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193