genome.fa.s4.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  120  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38044009--38044167	58	2.8	58	76	11	134	40	3	21	35	1.69
38044032--38044167	58	2.4	59	84	7	174	41	2	20	36	1.65
38044043--38044251	85	2.4	85	80	12	214	39	3	21	36	1.70
38044032--38044253	58	3.9	56	72	17	165	40	3	21	35	1.69
38044035--38044253	29	7.6	29	72	16	143	40	3	20	35	1.69
38049502--38049535	10	3.4	10	95	0	59	82	0	14	2	0.79
38055812--38055876	31	2.2	29	81	8	76	50	3	9	36	1.50
38073461--38073489	2	14.5	2	100	0	58	51	0	0	48	1.00
38073857--38073898	17	2.3	19	84	8	61	69	2	0	28	1.01
38080110--38080186	40	1.9	40	91	0	127	36	12	18	32	1.89
38080369--38080423	22	2.5	22	74	11	58	36	0	7	56	1.27
38080432--38080465	16	2.2	16	89	5	52	70	5	0	23	1.09
38080628--38080678	8	6.9	7	83	16	59	60	1	0	37	1.08
38080628--38080678	15	3.4	15	94	5	86	60	1	0	37	1.08
38081852--38081885	11	3.1	11	82	0	50	67	2	2	26	1.19
38090453--38090483	15	2.1	15	100	0	62	54	6	19	19	1.65
38094241--38094481	52	4.6	52	84	2	306	25	13	24	36	1.92
38094241--38094481	104	2.3	104	89	3	369	25	13	24	36	1.92
38108358--38108383	11	2.4	11	100	0	52	46	11	7	34	1.69
38111419--38111457	9	4.1	9	84	12	51	64	0	0	35	0.94
38111419--38111469	20	2.4	21	87	6	68	62	1	0	35	1.06
38113211--38113345	42	3.2	41	83	6	173	23	15	20	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38113360--38113454	47	2.0	47	82	11	115	23	20	18	37	1.94
38121509--38121558	6	8.3	6	100	0	100	16	66	0	18	1.26
38125844--38125873	12	2.6	12	94	5	53	73	0	0	26	0.84
38130933--38131050	6	20.5	6	67	22	58	44	2	2	50	1.29
38131008--38131049	10	3.9	11	78	15	52	50	0	0	50	1.00
38130998--38131038	21	2.1	19	90	9	64	46	0	0	53	1.00
38131005--38131050	11	4.3	11	81	13	60	47	0	0	52	1.00
38139132--38139167	6	6.0	6	100	0	72	16	16	50	16	1.79
38140818--38140851	17	2.0	17	94	0	59	61	0	0	38	0.96
38140816--38141265	94	4.6	97	82	11	530	51	4	1	42	1.30
38140901--38141047	44	3.2	44	66	17	118	49	4	1	44	1.32
38141124--38141157	16	2.1	16	89	10	52	50	5	0	44	1.26
38141000--38141200	109	1.9	108	86	5	289	50	5	1	41	1.36
38141179--38141292	53	2.1	54	84	7	144	51	2	0	45	1.15
38141138--38141309	87	1.9	89	81	12	210	49	4	0	45	1.25
38147864--38147987	30	4.2	30	77	9	130	33	6	22	37	1.80
38149112--38149190	21	3.8	21	77	11	65	44	5	2	48	1.38
38149942--38150003	17	3.6	16	80	10	61	56	6	1	35	1.35
38150340--38150974	206	3.2	199	87	3	844	22	24	20	33	1.97
38151254--38151525	49	5.5	49	70	9	142	15	24	19	40	1.90
38152304--38152512	105	2.1	99	80	7	222	40	10	24	24	1.87
38152766--38152835	11	5.9	11	75	14	52	0	18	1	80	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38152767--38152829	28	2.3	27	83	2	72	0	17	1	80	0.78
38155388--38155621	117	2.0	117	99	0	459	25	20	15	37	1.93
38160024--38160089	29	2.3	29	91	0	105	39	4	22	33	1.75
38160034--38160186	29	5.2	30	72	7	100	38	4	18	37	1.72
38160034--38160186	59	2.6	59	79	8	177	38	4	18	37	1.72
38161136--38161218	21	4.0	21	80	9	82	42	4	2	50	1.36
38161244--38161269	11	2.4	11	100	0	52	53	0	0	46	1.00
38162678--38162995	50	6.5	50	72	12	194	16	29	18	35	1.93
38162764--38163446	345	2.0	345	86	0	943	18	29	16	34	1.93
38166836--38167183	52	6.7	52	91	0	525	24	14	25	35	1.93
38171839--38171978	52	2.7	52	92	0	217	23	13	27	35	1.92
38187851--38187920	7	11.0	7	67	29	50	55	0	0	44	0.99
38187831--38187945	56	2.0	57	88	5	169	55	3	0	40	1.17
38187889--38188137	97	2.6	96	90	5	382	49	5	0	44	1.29
38187876--38188180	97	3.2	92	84	7	285	49	4	1	43	1.32
38197174--38197232	27	2.2	27	78	3	66	32	1	3	62	1.21
38199173--38199293	62	2.0	62	94	0	215	28	13	21	37	1.91
38203950--38204164	42	5.0	42	82	6	159	26	15	24	33	1.95
38204495--38205032	98	5.4	98	84	5	661	19	26	17	36	1.94
38204495--38205037	49	11.0	49	73	9	397	19	25	17	36	1.94
38205011--38205061	26	2.0	26	92	0	84	19	27	11	41	1.86
38204912--38205147	124	1.9	124	89	1	366	20	25	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38205037--38205154	49	2.4	48	78	5	130	20	27	15	37	1.92
38206076--38206108	10	3.2	10	91	8	57	3	9	0	87	0.63
38206072--38206106	11	3.3	11	92	8	63	5	8	0	85	0.73
38206928--38207034	51	2.1	52	84	5	137	13	19	10	57	1.64
38213455--38213526	11	6.5	11	78	0	54	16	6	9	66	1.41
38216921--38216959	20	1.9	21	89	5	62	23	15	25	35	1.94
38220981--38221020	21	1.9	21	85	10	55	20	32	32	15	1.93
38221753--38221817	30	2.2	31	78	18	75	24	4	9	61	1.45
38233801--38233841	20	2.0	22	90	9	68	43	0	0	56	0.99
38234932--38235002	29	2.4	30	86	11	103	46	0	0	53	1.00
38234951--38234994	14	3.1	14	74	6	52	56	0	0	43	0.99
38243842--38243876	13	2.7	13	95	0	61	28	0	5	65	1.15
38246134--38246226	45	2.1	44	95	2	168	34	16	15	34	1.90
38247050--38247172	48	2.6	48	85	2	167	24	25	15	34	1.94
38246983--38247293	172	1.8	172	90	1	498	24	20	17	37	1.94
38247213--38247379	85	2.0	85	85	2	228	23	20	16	38	1.93
38247097--38248016	209	4.4	209	86	1	1179	23	20	17	38	1.93
38248022--38248111	46	2.0	45	84	2	117	30	21	20	28	1.98
38248016--38248268	45	5.6	45	78	8	201	27	20	22	29	1.98
38248100--38248268	91	1.9	90	82	1	212	25	20	24	30	1.99
38248016--38248268	136	1.9	136	80	6	307	27	20	22	29	1.98
38254886--38254917	17	1.9	17	93	6	57	28	12	6	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38256538--38256577	15	2.7	15	84	3	55	37	20	0	42	1.52
38259784--38259881	12	8.6	12	74	8	71	68	17	4	10	1.34
38259791--38259876	23	3.9	21	77	13	84	69	13	4	11	1.33
38259791--38259879	32	2.7	32	72	11	81	69	14	4	11	1.32
38259814--38259878	23	3.0	23	86	6	91	72	12	3	12	1.24
38274014--38274151	43	3.2	43	82	1	179	22	15	29	31	1.95
38275316--38275367	25	2.1	25	92	0	86	21	9	9	59	1.57
38277309--38277360	25	2.1	25	92	0	86	21	9	9	59	1.57
38279227--38279523	29	10.3	28	67	21	127	35	5	28	30	1.79
38279223--38279562	57	5.9	58	81	6	361	35	5	28	30	1.79
38279223--38279525	115	2.6	116	82	7	375	35	5	28	30	1.79
38279313--38279562	115	2.2	115	85	5	344	35	4	28	32	1.76
38280420--38280519	6	17.0	6	72	18	77	56	1	2	41	1.18
38280420--38280519	17	6.4	16	76	20	86	56	1	2	41	1.18
38280418--38280509	11	8.2	12	73	13	72	55	0	2	42	1.12
38282227--38282277	23	2.2	24	86	6	70	62	1	0	35	1.06
38282964--38283012	22	2.1	23	81	7	55	44	4	0	51	1.20
38286665--38286740	30	2.5	32	77	14	81	42	5	6	46	1.52
38287929--38287965	18	2.1	18	89	0	56	48	10	10	29	1.72
38296317--38297424	368	3.0	367	97	1	2121	33	22	11	33	1.89
38298395--38298429	18	1.9	18	94	0	61	65	14	5	14	1.44
38306419--38306581	81	2.0	81	89	2	247	28	18	12	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38309075--38309145	22	3.2	21	76	7	70	21	7	8	63	1.46
38309114--38309151	14	2.7	14	88	8	51	31	0	5	63	1.17
38315030--38315152	61	2.0	61	98	0	237	34	23	9	31	1.87
38324715--38324771	25	2.2	26	84	6	80	43	10	1	43	1.49
38327744--38327787	22	2.0	22	90	0	70	54	13	20	11	1.69
38346393--38346442	23	2.1	24	85	3	66	26	14	8	52	1.68
38353319--38353390	36	2.0	36	91	0	117	26	20	20	31	1.98
38354548--38354583	17	2.1	17	89	0	54	25	22	0	52	1.47
38360122--38360169	24	2.0	24	83	0	60	18	27	2	52	1.57
38366481--38366554	31	2.3	32	77	13	82	31	0	1	67	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193