genome.fa.s4.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  108  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34629784--34629835	26	2.0	26	84	3	68	55	3	5	34	1.42
34639984--34640070	44	2.0	44	93	4	149	43	18	6	31	1.76
34641213--34641262	24	2.1	24	81	7	57	34	10	4	52	1.54
34650031--34650143	6	18.8	6	98	0	181	50	15	4	29	1.64
34659800--34659836	14	2.6	14	84	16	58	35	0	16	48	1.46
34663388--34663438	26	2.0	26	84	7	68	74	1	1	21	1.02
34664249--34664288	21	1.9	21	89	0	62	35	22	15	27	1.94
34666322--34666391	33	2.1	33	97	0	131	35	22	11	30	1.90
34667146--34667304	55	2.9	54	82	6	178	33	23	18	24	1.97
34668722--34668782	22	2.8	22	82	7	72	45	27	1	24	1.62
34670357--34670524	84	2.0	84	90	2	266	39	10	17	32	1.84
34674736--34674797	30	2.1	30	100	0	124	43	9	19	27	1.82
34676944--34677088	44	3.2	45	77	8	127	66	17	4	10	1.38
34677029--34677088	21	2.5	25	82	17	67	68	15	5	11	1.36
34677070--34677118	23	2.2	22	81	3	53	69	14	6	10	1.35
34677012--34677153	56	2.6	53	81	11	146	67	17	4	9	1.37
34677077--34677148	22	3.3	21	84	5	81	68	19	5	6	1.34
34677405--34677443	18	2.1	19	90	4	62	33	2	0	64	1.08
34677493--34677525	16	2.1	16	88	11	50	36	3	0	60	1.12
34688573--34688614	16	2.7	16	78	14	52	61	0	38	0	0.96
34688997--34689051	19	2.7	19	81	13	58	16	9	10	63	1.51
34694906--34695061	37	4.1	37	78	8	138	25	19	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34696212--34696258	17	2.8	17	86	0	67	51	14	19	14	1.77
34699216--34699270	26	2.1	26	82	0	65	29	23	18	29	1.98
34699272--34699353	38	2.3	36	83	12	98	28	15	24	31	1.96
34699358--34699507	37	4.0	37	86	6	185	22	17	31	28	1.96
34699340--34699507	74	2.3	75	80	7	191	22	17	30	29	1.96
34699340--34699513	37	4.7	37	80	10	167	23	17	29	29	1.97
34702130--34702228	48	2.0	50	94	3	175	38	13	17	31	1.88
34707236--34707289	24	2.3	23	78	12	56	29	1	11	57	1.44
34722609--34723008	59	6.8	59	84	8	489	34	0	28	37	1.60
34722604--34723008	88	4.6	87	85	6	516	34	0	28	37	1.60
34722607--34723059	147	3.1	144	84	7	538	34	0	28	36	1.62
34722609--34723016	117	3.5	118	86	6	544	34	0	27	37	1.60
34722613--34723061	30	15.2	30	80	12	179	34	0	27	36	1.62
34725382--34725799	209	2.0	214	81	5	490	22	23	16	36	1.94
34725885--34725995	39	2.8	39	82	6	145	27	18	28	25	1.98
34725988--34726244	41	6.4	41	80	8	280	29	17	22	31	1.96
34726005--34726244	117	2.0	121	85	6	328	29	18	20	31	1.96
34726502--34726611	54	2.0	55	82	5	134	20	35	14	30	1.92
34726558--34726880	98	3.3	98	83	3	373	18	32	15	32	1.93
34727795--34727861	24	3.0	22	80	10	64	1	20	0	77	0.85
34727818--34727876	17	3.4	16	78	21	66	5	11	0	83	0.81
34727802--34727862	24	2.5	24	80	15	72	1	18	0	80	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34732644--34732717	19	4.3	19	65	25	56	41	0	18	39	1.51
34732644--34732741	49	2.0	49	89	0	151	41	1	22	34	1.61
34732713--34732846	30	4.5	30	81	0	169	39	3	23	32	1.73
34732823--34732867	23	2.0	22	87	8	65	42	4	15	37	1.67
34732848--34733013	30	5.6	28	86	9	199	34	0	27	38	1.57
34732996--34733029	15	2.3	15	100	0	68	47	0	17	35	1.48
34732966--34733053	45	2.0	45	91	8	144	35	0	23	40	1.55
34732936--34733082	75	2.0	75	87	2	215	34	0	26	38	1.57
34732906--34733118	105	2.0	105	87	7	308	35	0	27	37	1.57
34733011--34733143	30	4.5	30	85	6	166	34	0	27	38	1.57
34733011--34733147	59	2.3	59	81	8	163	36	0	26	37	1.57
34732876--34733147	135	2.0	135	96	1	503	34	0	27	38	1.57
34733011--34733156	29	4.9	30	79	10	124	36	0	26	36	1.57
34735740--34735780	12	3.0	14	82	13	50	2	31	0	65	1.05
34752566--34752608	18	2.4	18	88	7	61	51	2	0	46	1.13
34753361--34753402	17	2.4	17	77	18	50	66	7	0	26	1.17
34754119--34754320	110	1.8	109	82	5	255	35	26	8	29	1.87
34754983--34755058	30	2.6	31	77	10	88	42	10	14	32	1.80
34754983--34755102	30	4.2	29	68	18	81	42	10	15	30	1.82
34762575--34762615	21	2.0	21	90	4	66	26	26	24	21	2.00
34780697--34780804	24	4.5	24	86	4	137	23	19	24	33	1.97
34784284--34784331	24	2.0	24	100	0	96	45	8	16	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34795729--34796169	192	2.3	193	87	1	627	27	25	17	28	1.98
34804866--34804897	17	1.9	16	93	6	55	53	0	3	43	1.16
34806760--34806820	32	1.9	32	82	0	77	27	14	14	42	1.85
34808542--34808566	5	5.0	5	100	0	50	40	40	0	20	1.52
34815091--34815138	24	2.0	24	95	0	87	52	8	8	31	1.61
34815092--34815145	24	2.2	24	90	0	81	53	9	5	31	1.56
34816067--34816096	14	2.2	13	94	5	51	50	0	0	50	1.00
34833145--34833194	20	2.5	21	84	12	70	44	0	2	54	1.11
34835127--34835159	13	2.6	13	90	4	50	30	0	0	69	0.88
34835299--34835327	3	9.7	3	100	0	58	34	0	0	65	0.93
34840541--34840668	50	2.5	51	78	6	143	42	18	14	25	1.88
34840555--34841338	50	15.7	50	70	9	404	37	17	18	26	1.93
34840560--34841378	100	8.2	100	76	5	634	36	18	18	26	1.94
34840551--34841214	300	2.2	301	82	3	773	37	18	17	26	1.92
34841311--34841436	50	2.5	49	77	11	130	31	19	20	28	1.97
34843155--34843354	94	2.1	95	84	9	257	24	14	3	58	1.52
34843498--34843532	3	11.7	3	93	0	61	37	0	0	62	0.95
34850321--34850377	27	2.1	27	96	0	105	38	12	10	38	1.77
34854522--34854736	43	5.0	43	90	0	322	38	9	20	32	1.84
34861925--34862246	36	9.0	36	88	0	421	24	13	23	38	1.91
34873287--34873451	39	4.2	39	87	0	240	24	16	18	40	1.91
34873719--34873960	133	1.8	134	88	0	378	21	25	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34876856--34876999	71	2.0	71	100	0	288	45	9	9	34	1.70
34877130--34877368	39	6.2	39	76	5	173	23	12	20	43	1.85
34877130--34877368	78	3.1	78	80	2	207	23	12	20	43	1.85
34877090--34877318	117	2.0	117	80	0	260	24	15	18	41	1.89
34877235--34877390	39	4.1	38	82	6	174	22	12	21	43	1.86
34877191--34877370	78	2.4	76	84	3	238	22	12	20	44	1.85
34885714--34885769	29	1.9	29	100	0	112	37	14	23	25	1.92
34886567--34886742	25	7.3	25	77	7	139	31	23	18	26	1.97
34887441--34887484	3	14.7	3	95	0	79	68	0	31	0	0.90
34892309--34892352	18	2.3	20	88	7	65	65	2	0	31	1.05
34895440--34895469	10	3.0	10	100	0	60	30	10	10	50	1.69
34896106--34896442	30	11.5	30	71	13	159	35	26	2	35	1.69
34896162--34896320	83	1.9	83	80	5	187	34	28	1	34	1.69
34896247--34896386	60	2.3	61	87	4	196	37	31	0	30	1.63
34905969--34906048	42	1.9	42	92	0	133	45	17	23	13	1.84
34908441--34908780	30	11.6	30	74	7	196	36	27	1	34	1.67
34908567--34908780	59	3.6	59	80	3	232	36	32	1	29	1.66
34908568--34908780	30	7.1	30	80	2	212	37	31	1	29	1.66
34908960--34909019	25	2.4	25	75	10	59	23	6	5	65	1.37
34911274--34911312	20	1.9	21	89	5	62	15	0	7	76	0.99
34913474--34913542	28	2.5	28	92	0	111	23	20	21	34	1.96
34916053--34916147	46	2.1	46	95	0	172	22	11	32	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34922629--34922737	20	5.5	20	74	8	71	23	15	8	52	1.70
34922650--34922712	19	3.3	19	77	4	63	22	12	11	53	1.69
34922599--34922752	60	2.5	60	81	5	175	23	14	10	51	1.72
34922637--34922732	39	2.4	39	82	1	111	23	15	8	52	1.70
34923393--34923835	199	2.3	195	79	7	495	35	17	18	27	1.94
34925310--34925352	20	2.1	20	86	4	59	23	9	0	67	1.19
34925657--34925702	14	3.3	13	85	11	56	23	6	6	63	1.43
34927265--34927312	13	3.0	17	71	25	50	18	0	10	70	1.15
34929034--34929133	43	2.3	43	90	10	168	31	11	14	44	1.79
34929482--34929536	28	2.0	28	85	0	74	23	0	29	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193