genome.fa.s4.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  80  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26456483--26456576	46	2.0	47	85	6	129	57	12	10	19	1.64
26480082--26480121	21	1.9	21	89	0	62	25	2	45	27	1.66
26480146--26480180	15	2.3	15	95	0	61	51	2	31	14	1.57
26494787--26494822	6	6.0	6	86	0	54	77	0	22	0	0.76
26510734--26510785	17	3.1	17	74	0	50	46	15	19	19	1.85
26510846--26510879	13	2.8	12	91	8	52	70	11	0	17	1.16
26511239--26511283	12	3.7	12	90	3	72	0	40	0	60	0.97
26511236--26511291	24	2.3	24	81	0	76	3	37	0	58	1.15
26518537--26518580	6	7.2	6	90	10	63	0	20	0	79	0.73
26518537--26518581	20	2.4	19	92	7	74	0	22	0	77	0.76
26520202--26520240	13	3.2	12	82	10	53	0	28	2	69	1.02
26526727--26526798	36	2.0	36	100	0	144	41	19	22	16	1.90
26529255--26529327	36	2.0	36	100	0	146	24	34	5	35	1.79
26543613--26543703	29	3.2	28	80	7	94	34	28	15	21	1.94
26547923--26547983	27	2.3	27	91	2	97	31	8	21	39	1.82
26548195--26548241	20	2.3	20	81	0	58	21	17	21	40	1.91
26551820--26551883	23	2.8	22	72	11	58	46	7	0	45	1.32
26552135--26552214	31	2.6	30	86	5	99	41	1	8	48	1.42
26552140--26552214	29	2.5	29	86	6	96	41	0	9	49	1.35
26556498--26556732	41	5.8	41	82	5	226	28	24	31	15	1.95
26556503--26556756	123	2.1	124	82	5	318	29	24	30	16	1.96
26556538--26556756	41	5.3	41	80	6	196	27	26	30	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26558136--26558214	41	1.9	41	92	0	131	34	21	21	22	1.97
26561121--26561203	8	10.1	8	72	10	51	48	1	1	49	1.16
26561120--26561157	15	2.5	15	91	0	58	57	0	0	42	0.98
26561231--26561329	15	6.6	15	68	9	76	46	0	3	50	1.16
26561246--26561319	30	2.5	30	95	0	139	41	0	4	54	1.19
26561345--26561370	4	6.5	4	100	0	52	73	0	0	26	0.84
26561417--26561504	42	2.0	42	82	12	106	53	6	1	38	1.35
26561282--26561573	115	2.6	113	86	3	392	52	5	1	40	1.34
26561456--26561947	69	6.8	69	69	17	272	48	5	1	44	1.36
26561381--26561947	181	3.1	182	79	11	604	48	5	1	43	1.36
26561282--26562029	301	2.5	301	93	1	1254	49	5	1	43	1.36
26561718--26561805	42	2.0	42	85	12	115	52	6	1	39	1.36
26561657--26561874	112	2.0	111	88	2	330	49	7	1	41	1.42
26561890--26561996	50	2.2	49	81	9	121	44	6	1	46	1.40
26561668--26562053	181	2.1	174	82	10	467	48	7	1	42	1.41
26567779--26567935	66	2.4	66	90	0	242	43	17	24	14	1.86
26567921--26567963	21	2.0	21	95	0	77	30	23	46	0	1.52
26567929--26567973	21	2.1	21	91	0	72	33	22	44	0	1.53
26568169--26568197	15	1.9	15	100	0	58	13	3	34	48	1.60
26568266--26568533	85	3.1	85	91	2	421	26	22	31	20	1.98
26568266--26568575	128	2.4	127	88	3	435	25	23	30	20	1.98
26568266--26568575	43	7.3	42	87	4	417	25	23	30	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26568266--26568575	85	3.6	83	85	6	381	25	23	30	20	1.98
26578263--26578389	23	5.4	23	82	5	103	11	20	22	45	1.83
26578287--26578435	69	2.1	67	82	12	169	12	20	20	46	1.83
26581369--26581404	10	3.7	10	88	3	56	41	16	0	41	1.48
26595105--26595150	21	2.1	22	84	4	58	43	8	4	43	1.55
26596299--26596354	19	3.1	17	83	14	76	10	5	14	69	1.34
26596337--26596406	33	2.1	34	86	2	97	7	7	20	65	1.41
26597396--26597437	15	3.0	14	86	6	59	19	0	7	73	1.05
26597772--26597819	20	2.5	20	74	16	55	47	0	4	47	1.21
26597814--26597843	13	2.4	13	94	5	53	23	0	6	70	1.11
26601741--26601776	18	2.0	18	88	0	54	58	0	22	19	1.40
26603690--26603758	26	2.7	26	75	6	68	28	23	21	26	1.99
26606228--26606279	24	2.2	24	85	0	68	55	7	3	32	1.46
26609474--26609506	8	4.4	8	96	3	52	0	6	0	93	0.33
26609474--26609508	14	2.6	14	90	4	54	0	8	0	91	0.42
26610397--26610436	3	13.3	3	100	0	80	67	0	0	32	0.91
26611485--26611562	7	11.7	7	82	10	83	33	25	24	16	1.96
26611482--26611562	32	2.5	33	89	4	119	35	24	23	16	1.94
26611511--26611555	13	3.4	13	84	6	63	40	24	20	15	1.91
26611492--26611562	27	2.7	27	89	4	101	33	25	23	16	1.96
26612065--26612139	11	6.5	11	73	14	62	69	0	25	5	1.09
26612065--26612137	23	3.1	23	75	11	67	69	0	24	5	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26617468--26617565	20	4.9	20	86	2	126	37	23	21	17	1.94
26617472--26617565	27	3.5	28	81	7	104	37	23	22	17	1.94
26617534--26617600	21	3.2	20	85	10	75	34	28	20	16	1.95
26617473--26617565	7	13.7	7	82	6	93	36	23	22	17	1.94
26617651--26617714	21	3.0	21	93	2	110	25	0	29	45	1.54
26618088--26618162	11	6.5	11	73	14	62	69	0	25	5	1.09
26618088--26618160	23	3.1	23	75	11	67	69	0	24	5	1.09
26632672--26632723	21	2.5	21	80	0	59	38	3	36	21	1.72
26636131--26636162	11	2.9	11	95	0	55	53	0	28	18	1.45
26636129--26636173	17	2.6	18	86	10	67	57	0	24	17	1.40
26636322--26636380	26	2.3	26	94	5	102	40	8	16	33	1.79
26639251--26639369	24	5.0	24	92	0	175	33	15	30	20	1.94
26639251--26639391	48	2.9	48	84	0	183	32	17	30	19	1.95
26639251--26639391	72	2.0	72	85	0	192	32	17	30	19	1.95
26639251--26639391	24	5.9	24	90	0	165	32	17	30	19	1.95
26642707--26642832	63	1.9	67	84	7	170	33	8	10	47	1.68
26643746--26643794	20	2.5	20	86	6	64	10	6	18	65	1.43
26643758--26643803	20	2.2	20	80	3	56	13	8	15	63	1.52
26643800--26643845	24	1.9	24	90	0	74	8	4	17	69	1.31
26643806--26643874	24	2.9	24	87	10	90	10	2	14	72	1.22
26643809--26643898	12	7.8	12	72	7	71	10	3	14	72	1.24
26644736--26644761	4	6.5	4	100	0	52	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26644729--26644792	20	3.1	21	76	13	62	62	0	1	35	1.05
26650824--26650893	31	2.3	30	76	16	72	45	1	2	50	1.25
26650917--26650958	14	3.1	14	77	16	52	50	2	0	47	1.14
26652667--26652839	72	2.4	72	92	0	274	57	16	4	20	1.57
26654967--26655053	42	2.1	42	95	0	156	35	11	6	45	1.67
26656217--26656262	23	2.0	23	100	0	92	21	17	17	43	1.88
26659097--26659157	26	2.4	25	86	2	86	11	24	18	45	1.82
26659097--26659179	22	3.4	25	80	9	91	10	26	19	43	1.84
26660768--26661187	29	14.5	29	78	9	369	35	2	26	35	1.70
26660768--26661195	86	4.9	87	82	6	458	35	2	26	35	1.69
26663032--26663108	6	13.7	6	74	17	67	57	2	1	38	1.21
26663021--26663108	17	5.2	17	90	1	133	56	2	2	38	1.24
26663038--26663092	11	4.9	11	75	4	56	58	1	1	38	1.20
26663021--26663108	34	2.6	34	96	1	160	56	2	2	38	1.24
26664461--26664519	27	2.2	26	82	11	75	30	0	0	69	0.89
26670748--26670779	15	2.0	17	88	11	50	65	0	34	0	0.93
26670741--26670793	25	2.2	25	83	12	67	66	0	33	0	0.92
26670747--26670787	20	2.2	19	86	8	57	65	0	34	0	0.93
26673544--26673581	19	2.0	19	94	0	67	15	28	26	28	1.96
26673645--26673739	36	2.7	35	86	4	129	21	21	23	34	1.97
26683997--26684035	15	2.6	15	84	12	53	69	0	28	2	1.02
26684440--26684477	17	2.2	17	90	0	58	23	13	10	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26691606--26691672	22	3.0	22	100	0	134	22	35	23	17	1.95
26692437--26692494	26	2.2	26	84	0	71	32	22	22	22	1.98
26692509--26692789	81	3.5	81	81	2	305	34	28	14	21	1.93
26697776--26698078	81	3.8	80	81	1	320	31	28	17	22	1.96
26697776--26698076	161	1.9	162	81	0	370	31	28	17	22	1.96
26714077--26714131	19	2.8	20	76	17	62	20	5	0	74	1.01
26714082--26714123	12	3.6	12	83	3	50	19	4	0	76	0.96
26722221--26722262	18	2.5	17	76	7	50	0	23	0	76	0.79
26739647--26739940	81	3.7	80	81	2	320	32	30	15	20	1.94
26744799--26744856	26	2.2	26	87	0	80	36	24	17	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193