genome.fa.s4.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  81  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26744877--26745146	81	3.3	80	81	2	326	34	29	14	21	1.93
26748306--26748351	17	2.8	15	81	18	56	45	19	8	26	1.79
26751049--26751211	36	4.4	36	70	15	111	22	18	23	34	1.96
26751005--26751158	76	2.0	76	83	0	191	19	16	25	38	1.92
26751005--26751140	40	3.5	40	73	11	129	19	16	25	38	1.92
26751011--26751179	76	2.2	76	80	2	187	20	16	24	37	1.93
26762206--26762244	18	2.2	18	85	0	51	41	2	12	43	1.56
26762882--26763383	24	20.9	24	75	0	313	36	14	24	23	1.93
26762882--26763408	48	11.0	48	81	0	469	36	15	25	22	1.93
26762882--26763383	72	7.0	72	78	0	394	36	14	24	23	1.93
26765591--26765620	15	1.9	16	93	6	53	43	3	13	40	1.60
26765738--26765797	25	2.4	25	81	10	77	25	21	13	40	1.89
26765745--26765793	25	2.0	25	91	0	80	26	20	12	40	1.87
26765753--26765820	22	3.0	22	82	10	75	19	22	16	42	1.89
26790476--26790534	29	2.0	29	96	0	109	54	20	8	16	1.68
26803038--26803145	24	4.5	24	81	4	119	33	22	19	25	1.97
26812105--26812207	21	4.8	21	74	11	100	40	24	10	24	1.86
26812131--26812225	45	2.1	45	94	0	172	43	25	11	20	1.85
26812145--26812225	24	3.5	24	73	10	87	44	25	11	18	1.83
26815808--26815853	21	2.1	22	84	4	58	65	6	15	13	1.46
26817467--26817519	26	2.0	26	88	0	79	37	1	39	20	1.64
26819778--26819817	21	2.0	21	90	5	64	25	15	15	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26822676--26822704	15	1.9	15	100	0	58	55	20	10	13	1.68
26826804--26826898	27	3.5	27	88	1	136	24	16	23	35	1.95
26826887--26827002	24	4.5	24	77	14	124	24	22	25	28	1.99
26826923--26826983	31	2.0	31	90	0	95	29	21	24	24	1.99
26826899--26827002	55	1.9	55	89	0	163	25	22	24	27	1.99
26830583--26830715	41	3.2	42	77	7	119	26	26	12	35	1.91
26832152--26832197	21	2.1	22	88	4	67	65	6	17	10	1.45
26835388--26835412	9	2.8	9	100	0	50	48	36	0	16	1.46
26837696--26837726	16	1.9	16	93	0	53	51	3	19	25	1.62
26840629--26840654	2	13.0	2	100	0	52	50	0	0	50	1.00
26842860--26842891	16	2.0	16	93	0	55	53	3	18	25	1.59
26843363--26843809	196	2.3	194	84	5	539	28	17	26	27	1.98
26845346--26845389	23	2.0	22	86	4	61	45	15	0	38	1.47
26856194--26856237	23	2.0	22	86	4	61	45	15	0	38	1.47
26860183--26860207	13	1.9	13	100	0	50	8	24	28	40	1.83
26863470--26863506	19	1.9	19	88	0	56	48	18	2	29	1.62
26865810--26866030	46	4.8	46	80	2	219	27	17	23	31	1.97
26875958--26875988	3	10.3	3	92	0	53	70	29	0	0	0.87
26877161--26877205	21	2.1	21	88	8	65	46	8	11	33	1.70
26886859--26886897	17	2.4	17	87	12	55	12	17	17	51	1.76
26890157--26890837	340	2.0	340	98	0	1317	39	23	14	23	1.91
26891939--26892019	30	2.7	30	82	0	99	39	20	3	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26897917--26897971	25	2.2	25	96	0	101	16	29	10	43	1.82
26898726--26898853	57	2.3	55	85	5	168	29	7	12	50	1.66
26903004--26903167	58	2.8	58	87	2	240	23	16	12	47	1.80
26903016--26903189	30	5.9	30	74	18	159	24	17	11	46	1.81
26903856--26903924	32	2.2	31	81	2	75	50	10	13	26	1.72
26903807--26903973	91	1.8	92	82	6	214	51	13	12	22	1.74
26904436--26904474	13	3.0	13	96	0	69	56	23	5	15	1.59
26910369--26910444	30	2.5	31	79	12	86	44	1	2	51	1.23
26910874--26910901	7	4.0	7	100	0	56	85	0	14	0	0.59
26915206--26915256	23	2.3	23	83	10	61	41	3	3	50	1.39
26920132--26920186	28	2.0	28	92	7	94	30	18	27	23	1.97
26941807--26941831	3	8.3	3	100	0	50	32	32	0	36	1.58
26945400--26945743	168	2.0	169	89	5	530	33	25	11	30	1.91
26945857--26945912	28	2.0	28	89	0	85	41	14	5	39	1.68
26956525--26956599	22	3.4	22	94	0	123	9	34	21	34	1.85
26961010--26961067	29	2.0	29	89	0	89	25	20	15	37	1.92
26963438--26963501	32	2.0	32	100	0	128	37	12	12	37	1.81
26966031--26966084	28	1.9	28	92	0	90	24	29	12	33	1.92
26968576--26968626	21	2.4	21	80	6	59	31	23	13	31	1.93
26977528--26977829	163	1.9	163	84	6	416	39	16	12	31	1.86
26979448--26979551	41	2.5	41	95	1	190	36	11	24	27	1.90
26979577--26979673	40	2.4	40	89	0	149	42	7	25	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26988157--26988211	25	2.2	26	90	3	85	40	27	16	16	1.89
26988178--26988316	50	2.8	50	86	0	197	34	23	17	24	1.96
26991349--26991380	16	2.0	16	100	0	64	56	0	18	25	1.42
26996978--26998950	784	2.5	783	94	2	3420	38	8	8	44	1.65
26999324--26999382	2	30.0	2	96	3	111	49	0	0	50	1.00
27007005--27007039	15	2.3	15	85	0	52	14	0	37	48	1.44
27021141--27021187	24	2.0	25	84	16	64	65	8	4	21	1.37
27044314--27044344	7	4.4	7	100	0	62	16	25	0	58	1.38
27048416--27048445	3	10.0	3	100	0	60	33	33	0	33	1.58
27050004--27050033	15	1.9	16	93	6	53	40	0	0	60	0.97
27051554--27051640	26	3.3	25	72	17	68	22	6	8	62	1.47
27051535--27051702	61	2.9	57	79	10	155	24	11	11	52	1.69
27051542--27051692	30	5.2	30	70	14	95	25	11	11	51	1.71
27051535--27051639	56	1.9	54	86	3	147	24	8	9	57	1.59
27056388--27056580	102	1.9	103	82	3	246	33	13	23	30	1.93
27056388--27056626	51	4.6	51	82	4	221	33	14	22	29	1.94
27056575--27056693	60	2.0	62	83	5	154	36	15	21	27	1.93
27064512--27064583	26	2.7	27	83	10	78	30	0	2	66	1.06
27074619--27074652	9	3.8	9	92	0	50	29	8	23	38	1.85
27075179--27075207	13	2.1	14	93	6	51	34	0	3	62	1.12
27075448--27075498	23	2.2	23	86	6	68	52	5	1	39	1.37
27081499--27081632	70	1.9	71	89	3	207	32	17	10	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27087843--27088037	29	6.6	30	80	7	195	38	3	22	36	1.70
27087844--27088038	30	6.6	28	78	8	165	38	3	21	36	1.69
27092904--27092983	30	2.7	30	98	0	151	21	20	13	45	1.85
27096702--27096756	28	2.0	28	92	0	92	29	16	30	23	1.96
27103338--27103689	187	1.9	185	92	4	593	30	14	10	44	1.79
27104851--27104958	30	3.6	30	77	8	114	25	12	12	49	1.76
27105222--27105297	31	2.5	31	88	0	116	46	10	18	25	1.81
27105428--27105480	26	2.0	26	96	0	97	66	13	0	20	1.25
27107532--27107573	21	2.0	21	95	0	75	45	14	4	35	1.66
27115131--27115323	44	4.5	43	83	7	236	27	11	9	50	1.71
27117568--27117625	25	2.2	27	87	6	84	68	5	0	25	1.10
27117597--27117622	11	2.4	11	100	0	52	69	0	0	30	0.89
27117768--27118128	146	2.5	145	85	6	464	53	13	1	31	1.47
27117900--27117942	21	2.1	21	83	12	54	69	4	0	25	1.07
27124152--27124195	6	7.7	6	90	10	74	0	50	0	50	1.00
27130586--27130777	26	7.4	26	77	4	149	25	13	22	38	1.91
27130612--27130777	52	3.2	52	79	8	185	26	13	22	37	1.91
27130620--27130770	78	1.9	78	82	2	187	28	11	23	36	1.90
27130706--27130822	52	2.2	53	80	5	123	29	15	20	34	1.93
27137165--27137211	20	2.3	20	85	0	58	27	31	6	34	1.82
27139803--27139837	18	2.0	17	88	5	52	42	0	17	40	1.49
27142558--27142585	14	2.0	14	100	0	56	50	7	21	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27143704--27143759	21	2.5	23	82	5	62	26	7	23	42	1.79
27143817--27143869	21	2.6	19	80	16	61	30	13	24	32	1.93
27144484--27144566	37	2.2	37	97	0	157	36	21	14	27	1.93
27146855--27146906	27	2.0	26	88	3	77	44	13	0	42	1.44
27147779--27148360	147	3.9	146	85	7	691	43	9	2	44	1.50
27148061--27148099	18	2.1	18	85	4	51	46	2	2	48	1.29
27148824--27149535	42	16.9	42	85	2	863	36	23	18	21	1.95
27149960--27149996	7	5.6	7	87	9	51	0	21	0	78	0.75
27149937--27150012	19	3.9	19	80	11	75	0	15	5	78	0.91
27151747--27151791	24	2.0	23	82	8	56	44	28	0	26	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193