genome.fa.s4.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  110  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35322481--35322557	38	2.0	39	92	2	129	41	2	32	23	1.68
35324498--35324678	84	2.1	85	92	3	303	33	11	8	46	1.70
35324779--35324954	81	2.2	83	76	10	177	31	9	10	48	1.68
35327638--35327739	53	2.0	52	82	7	127	35	1	8	53	1.43
35330223--35330442	91	2.4	91	81	6	259	48	12	4	34	1.60
35330601--35330634	15	2.3	15	89	0	50	41	0	0	58	0.98
35332395--35332576	97	1.9	92	91	6	294	52	7	8	31	1.59
35333284--35333342	28	2.1	28	93	0	100	30	6	18	44	1.76
35333329--35333467	62	2.2	62	88	0	197	33	12	12	41	1.81
35333810--35333849	21	2.0	20	85	5	53	35	2	12	50	1.54
35334030--35334287	89	2.9	91	90	3	396	45	12	9	32	1.73
35335971--35336016	14	3.4	14	76	11	60	39	19	8	32	1.82
35338179--35338203	6	4.2	6	100	0	50	16	0	0	84	0.63
35338637--35338895	128	2.0	128	98	0	500	35	12	13	38	1.82
35340185--35340643	232	1.9	237	94	4	822	40	7	6	45	1.58
35353733--35353787	26	2.1	26	86	6	76	27	12	20	40	1.88
35356597--35356651	16	3.4	16	94	0	101	40	7	25	27	1.82
35356777--35356923	59	2.5	56	82	10	179	49	1	2	46	1.21
35356777--35356905	59	2.2	59	87	6	183	48	1	0	48	1.16
35359083--35359120	18	2.1	18	100	0	76	36	0	26	36	1.57
35380264--35380380	41	2.9	42	87	3	168	28	21	28	22	1.99
35381803--35381959	66	2.4	66	92	0	260	42	16	25	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35382259--35382399	43	3.3	42	85	4	192	27	20	29	22	1.99
35385696--35385746	15	3.5	15	71	15	52	29	5	7	56	1.51
35387156--35387235	7	11.4	7	70	19	51	43	2	5	48	1.38
35390595--35390639	23	1.9	24	86	13	67	33	4	6	55	1.46
35392177--35392252	11	6.8	11	68	24	52	56	1	0	42	1.07
35392092--35392234	68	2.0	75	84	12	192	53	4	2	39	1.34
35397699--35397758	24	2.5	24	86	0	84	46	10	15	28	1.77
35401375--35401421	22	2.1	23	84	4	60	19	4	8	68	1.33
35405365--35405419	17	3.2	17	73	12	51	25	16	10	47	1.79
35405971--35406020	26	1.9	26	87	0	73	88	2	8	2	0.68
35405971--35406020	24	2.1	24	84	0	64	88	2	8	2	0.68
35417038--35417155	54	2.2	54	96	0	218	27	16	23	32	1.96
35419222--35419266	22	2.0	22	87	8	65	62	13	4	20	1.48
35419948--35420003	17	3.3	17	68	26	55	19	37	1	41	1.62
35419934--35420002	34	2.0	34	97	0	129	18	36	2	42	1.66
35420485--35420549	33	1.9	33	84	3	85	33	6	13	46	1.69
35425431--35425485	17	3.2	17	72	27	62	20	38	1	40	1.63
35425423--35425520	34	2.9	34	92	0	160	17	36	4	41	1.68
35425984--35426024	21	2.0	20	86	13	57	51	0	0	48	1.00
35426320--35426370	5	10.4	5	91	4	86	56	1	0	41	1.10
35427296--35427323	7	4.0	7	100	0	56	14	0	42	42	1.45
35429406--35429452	17	2.8	17	78	18	53	51	8	23	17	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35429883--35429928	12	3.5	13	80	17	51	0	34	0	65	0.93
35440643--35440712	21	3.3	21	76	11	81	40	21	12	25	1.89
35440646--35440731	42	2.0	42	82	8	104	34	23	12	29	1.92
35443490--35443541	26	2.0	26	85	7	70	36	1	5	55	1.35
35443786--35443836	24	2.2	23	86	10	68	56	0	0	43	0.99
35444711--35444744	17	2.0	17	88	0	50	50	0	2	47	1.16
35445513--35445597	44	1.9	45	82	2	109	51	2	8	37	1.45
35455491--35455531	17	2.4	17	80	19	50	51	19	17	12	1.76
35467882--35467917	18	1.9	19	94	5	65	50	2	2	44	1.31
35471748--35471782	18	1.9	18	94	0	61	25	11	25	37	1.90
35471832--35471868	18	2.1	18	89	0	56	51	13	8	27	1.69
35472060--35472118	30	2.0	30	86	6	84	22	40	0	37	1.54
35472380--35472426	17	2.7	18	80	9	62	40	2	0	57	1.11
35473961--35473990	5	6.0	5	96	0	51	76	0	0	23	0.78
35489577--35489609	15	2.2	15	100	0	66	30	6	15	48	1.69
35490255--35490317	6	9.7	6	74	16	54	20	1	1	76	0.96
35490257--35490311	13	4.0	14	81	9	60	21	1	1	74	1.01
35490273--35490318	14	3.4	14	80	11	51	19	4	2	73	1.10
35493083--35493116	11	3.3	11	84	16	54	79	0	5	14	0.91
35493138--35493186	22	2.2	23	96	3	91	18	2	0	79	0.83
35493138--35493185	6	8.3	6	90	4	73	16	2	0	81	0.79
35493152--35493210	22	2.6	22	81	10	66	22	3	1	72	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35493140--35493210	28	2.5	28	83	0	79	21	4	1	73	1.08
35494113--35494185	14	5.3	13	76	12	58	78	1	12	8	1.03
35494113--35494185	24	2.9	24	80	10	76	78	1	12	8	1.03
35494164--35494198	15	2.2	16	90	5	54	82	2	14	0	0.77
35495224--35495269	25	1.9	25	86	8	69	32	4	6	56	1.45
35519888--35519940	20	2.8	20	91	5	83	41	22	18	16	1.90
35519890--35520000	18	6.0	18	80	5	98	35	22	21	20	1.96
35522151--35522208	22	2.7	22	97	2	109	46	0	8	44	1.34
35523351--35523382	16	2.0	16	93	0	55	53	3	18	25	1.59
35523862--35524306	195	2.3	198	80	7	487	27	19	26	26	1.99
35527101--35527145	18	2.5	18	85	7	56	20	26	31	22	1.98
35540660--35540696	19	1.9	19	88	0	56	2	16	0	81	0.81
35541285--35541322	17	2.2	17	86	9	51	55	15	13	15	1.70
35554802--35554910	28	3.8	28	80	10	123	47	0	0	50	1.13
35555706--35555809	29	3.6	29	80	10	108	46	0	0	52	1.07
35555764--35555818	19	3.0	19	71	5	51	45	0	0	54	0.99
35566066--35566097	16	2.0	16	93	0	55	6	28	37	28	1.81
35569607--35569654	22	2.1	24	85	11	66	27	18	22	31	1.97
35572383--35574112	870	2.0	872	96	1	3238	36	9	16	38	1.81
35574611--35574953	52	6.6	52	85	0	445	25	12	24	36	1.91
35579385--35579439	24	2.3	24	83	0	65	27	18	23	30	1.97
35579420--35579495	25	3.0	25	84	3	100	17	11	25	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35580641--35580665	2	12.5	2	100	0	50	52	0	0	48	1.00
35583168--35583249	26	3.2	26	64	25	64	29	9	21	39	1.86
35583150--35583484	52	6.5	52	88	3	464	26	13	23	36	1.92
35586968--35587060	43	2.2	43	96	3	172	29	27	13	29	1.95
35591582--35591660	36	2.2	36	93	0	131	31	8	21	37	1.84
35591579--35591746	86	2.0	86	92	0	282	32	8	22	36	1.84
35591662--35591879	36	6.1	36	87	0	319	29	7	24	38	1.83
35592353--35592486	61	2.2	59	85	5	178	37	3	18	40	1.69
35592343--35592585	110	2.3	107	87	3	346	37	3	18	40	1.68
35592402--35592532	49	2.7	49	82	5	142	38	3	16	41	1.67
35592431--35592511	24	3.4	24	69	17	69	38	3	16	41	1.66
35592353--35592593	58	4.3	58	77	12	223	36	3	18	40	1.69
35592568--35592629	10	6.3	10	86	1	81	33	0	22	43	1.54
35592568--35592629	30	2.1	29	93	3	106	33	0	22	43	1.54
35592608--35592714	23	4.6	23	88	2	151	34	2	14	47	1.59
35596898--35596947	23	2.2	23	92	0	82	34	4	12	50	1.58
35596898--35596960	23	2.7	23	87	0	63	34	3	14	47	1.60
35597438--35597664	39	5.8	39	87	1	294	24	18	21	36	1.95
35599106--35599176	25	2.8	27	71	14	71	39	5	18	36	1.74
35599164--35599210	10	4.6	10	86	2	67	36	2	21	40	1.65
35599156--35599210	20	2.8	20	88	5	76	34	3	21	40	1.71
35604620--35604654	18	1.9	18	88	0	52	71	11	5	11	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35612007--35612077	30	2.4	30	79	11	74	32	4	11	52	1.56
35614713--35614754	21	2.0	21	90	0	66	38	9	11	40	1.75
35621569--35621611	21	2.0	21	86	4	59	37	4	6	51	1.50
35624455--35624499	18	2.5	17	82	10	54	0	40	2	57	1.11
35644284--35644331	19	2.5	20	75	21	50	45	0	0	54	0.99
35644961--35645018	25	2.3	25	82	8	73	36	1	1	60	1.17
35644961--35645020	26	2.4	25	78	15	70	36	1	1	60	1.17
35658838--35658873	15	2.4	15	90	0	54	52	0	16	30	1.44
35670896--35670930	17	2.1	16	89	5	52	42	0	2	54	1.15
35674897--35675073	28	6.4	28	84	1	196	26	15	23	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193