genome.fa.s4.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  150  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46756817--46757164	119	2.9	118	80	3	387	30	24	18	26	1.98
46758165--46758333	67	2.7	64	86	12	237	40	0	4	53	1.26
46761470--46761513	22	2.0	22	86	8	63	45	25	4	25	1.72
46767254--46767305	27	1.9	27	84	7	70	21	9	11	57	1.62
46768438--46768482	3	14.7	3	95	4	81	33	0	0	66	0.92
46769463--46769538	6	13.0	6	73	20	63	43	1	1	53	1.17
46769463--46769538	17	4.4	17	84	11	100	43	1	1	53	1.17
46770330--46770364	17	2.1	17	94	0	61	62	0	0	37	0.95
46777138--46777495	50	7.1	50	69	9	181	40	20	25	13	1.89
46777135--46777475	100	3.4	100	80	4	384	39	21	25	13	1.89
46777755--46778056	39	7.7	39	68	14	140	23	27	21	26	1.99
46777770--46778306	156	3.4	156	93	1	844	25	29	19	25	1.98
46777796--46778251	39	11.7	39	67	10	252	25	29	19	25	1.98
46777757--46778306	234	2.4	234	86	0	733	25	29	19	25	1.98
46777769--46778306	78	6.9	78	85	0	655	25	29	19	25	1.99
46778337--46779209	206	4.3	206	90	2	1278	36	19	22	20	1.95
46779562--46779637	6	13.0	6	73	20	63	43	2	1	52	1.23
46779562--46779637	17	4.4	17	82	11	91	43	2	1	52	1.23
46779562--46779636	10	7.0	11	72	20	61	42	2	1	53	1.23
46779591--46779654	33	1.9	33	81	6	76	48	3	3	45	1.34
46780443--46780471	13	2.2	13	100	0	58	48	0	0	51	1.00
46781607--46781803	58	3.4	58	78	9	213	35	26	3	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46781607--46781803	29	6.8	28	77	9	182	35	26	3	35	1.72
46786548--46786579	2	17.0	2	87	12	50	50	0	0	50	1.00
46786652--46786698	3	15.7	3	100	0	94	34	0	0	65	0.93
46803854--46803897	18	2.4	18	85	7	63	31	0	2	65	1.05
46803897--46803936	18	2.2	18	86	8	55	45	0	5	50	1.23
46816635--46816751	31	3.9	31	73	16	111	56	5	1	36	1.32
46818669--46818696	6	4.7	6	100	0	56	17	32	35	14	1.90
46826374--46826419	15	3.0	16	78	12	60	54	6	13	26	1.62
46826374--46826434	30	2.0	30	87	9	88	54	8	14	22	1.67
46826612--46826973	30	12.1	30	88	5	511	33	2	24	38	1.70
46826612--46826973	89	4.0	89	89	5	516	33	2	24	38	1.70
46826612--46826973	59	6.1	59	88	4	523	33	2	24	38	1.70
46828020--46828069	18	2.6	19	87	6	66	40	8	0	52	1.31
46828442--46828488	24	2.0	24	83	8	60	27	8	23	40	1.83
46853372--46853534	86	1.9	86	85	9	226	34	23	14	26	1.94
46861337--46861372	14	2.6	14	91	4	56	44	11	22	22	1.84
46863646--46863687	17	2.4	18	80	4	50	38	0	7	54	1.28
46863646--46863719	23	3.2	23	68	0	58	45	1	5	47	1.34
46865530--46865887	29	12.2	28	66	24	122	33	29	1	34	1.69
46865542--46865895	59	6.0	59	88	5	488	33	29	1	34	1.69
46872458--46872561	37	2.7	38	76	5	93	31	26	19	22	1.97
46873394--46873475	13	6.6	12	74	16	60	51	1	1	46	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46873913--46873954	22	1.9	22	90	0	66	21	16	26	35	1.94
46880636--46880707	22	3.3	23	75	13	62	16	19	27	36	1.93
46880675--46880716	22	1.9	22	90	0	66	21	16	26	35	1.94
46880968--46880998	15	2.1	15	93	0	53	29	25	6	38	1.81
46881632--46881663	17	1.9	17	93	6	57	34	6	3	56	1.40
46894102--46894173	22	3.3	23	75	13	62	16	19	27	36	1.93
46894141--46894182	22	1.9	22	90	0	66	21	16	26	35	1.94
46894434--46894464	15	2.1	15	93	0	53	29	25	6	38	1.81
46895098--46895129	17	1.9	17	93	6	57	34	6	3	56	1.40
46897293--46897432	30	4.7	30	69	19	107	31	29	5	33	1.81
46897293--46897729	59	7.5	59	82	5	460	31	29	4	34	1.78
46897288--46897694	117	3.5	116	83	6	468	31	29	3	35	1.76
46909813--46909924	37	2.9	40	68	24	112	35	16	20	27	1.94
46909902--46910728	68	11.9	68	88	5	1160	34	16	20	28	1.94
46909826--46910652	136	6.0	136	95	1	1282	35	16	20	27	1.94
46909826--46910728	144	6.4	136	93	3	1274	34	16	20	28	1.94
46911046--46911149	6	18.0	6	72	18	78	41	1	1	54	1.22
46911058--46911149	17	5.7	16	83	11	116	41	2	1	55	1.19
46911046--46911149	11	9.0	11	72	15	68	41	1	1	54	1.22
46912767--46913108	161	2.1	162	90	1	553	26	18	12	42	1.86
46913172--46913280	29	3.8	28	76	12	105	35	28	0	34	1.64
46913178--46913640	58	8.0	58	84	5	530	31	29	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46913180--46913642	233	2.0	232	84	7	600	31	28	4	34	1.76
46913268--46913607	29	11.7	29	70	17	206	31	28	4	35	1.76
46918028--46918086	29	2.0	29	86	6	82	37	6	23	32	1.81
46921469--46921514	25	1.9	23	86	8	65	36	4	4	54	1.40
46929115--46929162	16	3.3	14	80	14	53	77	0	12	10	1.00
46929115--46929162	15	3.3	14	80	16	53	77	0	12	10	1.00
46943204--46943266	32	2.0	32	83	0	81	42	25	3	28	1.70
46946921--46947018	6	16.3	6	67	18	53	42	1	5	51	1.31
46946913--46947049	17	8.1	17	80	8	118	45	1	4	48	1.31
46946996--46947047	18	2.9	18	80	5	52	48	1	3	46	1.31
46948988--46949175	58	3.2	59	75	6	179	27	30	5	36	1.80
46950625--46951055	196	2.2	196	92	0	702	27	27	19	26	1.99
46951851--46951886	2	18.0	2	100	0	72	50	0	0	50	1.00
46958127--46958164	18	2.1	18	90	0	58	44	13	10	31	1.77
46962555--46962597	18	2.4	18	88	7	61	53	0	0	46	1.00
46963461--46963503	22	2.0	22	86	9	61	48	0	2	48	1.14
46967743--46968115	205	1.8	206	80	5	457	34	15	22	28	1.94
46969212--46969241	8	3.8	8	90	0	51	66	0	0	33	0.92
46977586--46977637	28	1.9	27	88	7	79	19	0	9	71	1.13
46979533--46979604	21	3.4	21	78	3	90	23	18	9	48	1.77
46982190--46982243	22	2.5	22	87	0	72	20	0	16	62	1.32
46997545--46997584	16	2.4	17	91	4	64	27	0	12	60	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46997766--46997821	27	2.1	27	100	0	112	41	14	7	37	1.73
47001595--47001646	13	4.0	13	74	0	50	34	5	21	38	1.77
47015155--47015224	31	2.2	32	92	2	115	41	10	10	38	1.72
47021853--47021890	13	2.9	13	81	14	51	36	18	0	44	1.50
47030251--47030294	15	2.9	15	75	0	52	25	11	47	15	1.79
47035135--47035186	15	3.2	15	73	19	50	46	0	0	53	1.00
47035148--47035184	19	1.9	19	88	0	56	51	0	0	48	1.00
47035904--47035959	2	28.0	2	100	0	112	50	0	0	50	1.00
47037248--47037313	29	2.2	29	83	5	78	46	1	1	50	1.20
47037349--47037395	22	2.2	20	82	10	58	53	10	0	36	1.36
47037613--47037652	3	13.3	3	83	0	53	35	25	5	35	1.78
47037613--47037650	15	2.5	15	95	0	67	34	23	5	36	1.78
47044378--47044425	24	1.9	26	87	8	73	39	0	0	60	0.97
47044803--47044856	25	2.2	24	77	9	56	53	1	7	37	1.40
47044955--47045002	18	2.8	16	87	9	60	22	4	2	70	1.15
47047910--47048093	96	1.9	96	82	6	230	36	14	19	29	1.91
47048375--47048591	30	7.3	28	75	11	173	41	4	20	34	1.71
47048372--47048625	60	4.3	60	79	8	261	38	3	21	35	1.72
47048372--47048615	119	2.0	121	82	6	302	39	4	20	35	1.72
47048477--47048612	30	4.5	30	78	2	96	39	4	18	37	1.71
47049595--47049649	3	17.7	3	85	7	74	32	3	1	61	1.24
47050378--47050432	6	9.0	6	76	11	58	54	1	0	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47050378--47050437	13	4.8	13	78	8	63	56	3	0	40	1.16
47050378--47050432	19	3.0	18	79	10	67	54	1	0	43	1.10
47056573--47056625	16	3.3	16	76	10	54	15	32	3	49	1.62
47064697--47064729	17	1.9	18	88	11	52	57	3	9	30	1.45
47066909--47066948	20	2.0	20	90	0	62	42	17	7	32	1.77
47083052--47083077	2	13.0	2	100	0	52	50	0	50	0	1.00
47088230--47088479	134	1.9	134	82	3	306	44	12	12	31	1.79
47089735--47089778	23	1.9	23	95	0	79	29	0	9	61	1.27
47090920--47090976	29	2.0	30	83	13	75	49	0	5	45	1.24
47091198--47091255	25	2.3	27	77	22	72	32	5	8	53	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193