genome.fa.s4.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  114  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36368344--36368472	30	4.3	30	80	4	91	41	5	18	34	1.74
36368361--36368489	30	4.3	30	80	7	129	36	3	20	39	1.71
36368361--36368499	59	2.3	60	79	7	149	35	4	20	38	1.73
36370213--36370586	58	6.4	58	83	9	415	35	2	29	31	1.73
36370215--36370583	116	3.2	115	82	7	469	36	2	29	31	1.72
36371727--36371757	9	3.3	9	91	8	53	41	0	0	58	0.98
36372561--36372648	17	5.3	15	76	15	77	56	2	0	40	1.11
36372575--36372645	6	12.7	6	72	14	53	59	2	0	38	1.12
36372574--36372648	11	6.8	11	77	11	73	57	2	0	40	1.13
36372575--36372645	17	4.2	17	80	3	81	59	2	0	38	1.12
36372917--36373492	38	15.4	36	69	22	293	32	17	14	34	1.90
36372908--36373667	76	10.1	76	89	4	1042	32	17	15	34	1.92
36372913--36373645	38	19.5	38	65	17	262	32	17	15	34	1.91
36385744--36385882	58	2.4	58	83	8	160	32	4	30	32	1.77
36386033--36386338	159	1.9	160	91	2	499	42	13	17	26	1.86
36386986--36387065	3	26.0	3	78	12	56	41	1	0	57	1.07
36387867--36387921	11	5.0	11	80	6	58	56	3	1	38	1.28
36388369--36388402	9	3.6	9	85	14	50	11	0	11	76	1.02
36388473--36388517	12	3.6	13	82	14	51	2	22	11	64	1.36
36389136--36389178	19	2.3	19	88	4	61	37	0	0	62	0.95
36391681--36391714	17	1.9	18	94	5	61	55	2	0	41	1.15
36396657--36396687	7	4.6	7	92	8	55	0	16	12	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36396949--36396977	14	2.0	15	93	6	51	68	0	0	31	0.89
36397141--36397171	14	2.1	14	94	5	53	25	9	0	64	1.24
36399419--36399506	12	7.4	12	82	7	81	50	7	0	42	1.32
36399437--36399507	2	36.0	2	88	2	108	49	4	0	46	1.21
36399425--36399506	8	10.4	8	87	7	96	50	7	0	42	1.30
36399556--36399644	37	2.4	38	86	1	117	19	14	35	30	1.91
36404726--36404756	15	2.1	15	100	0	62	35	25	19	19	1.95
36404754--36404794	20	2.0	20	100	0	82	60	9	9	19	1.55
36408765--36408789	10	2.5	10	100	0	50	8	20	8	64	1.46
36412817--36412888	35	2.1	34	87	5	101	40	5	2	51	1.40
36415859--36415907	19	2.5	21	87	9	68	73	2	0	24	0.94
36415901--36415931	8	3.9	8	95	0	53	41	0	0	58	0.98
36434145--36434199	27	2.0	27	89	0	83	40	0	5	54	1.23
36434163--36434262	6	16.8	6	79	13	100	48	0	1	51	1.07
36434153--36434239	11	7.5	11	79	13	70	42	0	2	55	1.12
36434163--36434237	17	4.6	17	85	11	104	42	0	1	56	1.08
36434190--36434262	31	2.4	30	79	9	76	50	0	1	47	1.09
36434176--36434262	37	2.4	36	79	12	97	50	0	1	48	1.08
36435437--36435487	27	1.9	26	88	4	75	17	29	47	5	1.71
36435499--36435531	16	1.9	18	88	11	52	9	24	48	18	1.76
36435790--36436103	163	1.9	163	90	1	497	25	17	12	44	1.84
36435814--36436158	163	2.1	161	84	3	442	25	18	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36436225--36436391	30	5.7	29	71	20	116	32	30	3	33	1.75
36436231--36436419	59	3.3	57	88	7	260	33	29	3	33	1.75
36436231--36436419	29	6.6	27	72	18	132	33	29	3	33	1.75
36448545--36449222	69	9.9	69	95	0	1051	35	17	20	27	1.94
36449541--36449595	27	2.0	27	89	0	83	40	0	5	54	1.23
36449559--36449657	6	16.8	6	77	15	91	47	0	1	51	1.07
36449549--36449635	11	7.5	11	79	13	70	42	0	2	55	1.12
36449559--36449657	17	5.9	17	79	11	107	47	0	1	51	1.07
36451196--36451507	161	1.9	162	89	3	486	25	17	12	43	1.84
36451602--36451861	29	8.9	29	69	18	119	31	29	5	33	1.80
36451635--36451889	59	4.4	59	89	3	347	31	29	4	34	1.78
36451630--36451882	30	8.7	29	72	15	148	32	28	3	35	1.76
36460036--36460087	15	3.5	15	75	21	56	59	0	3	36	1.16
36462918--36462995	37	2.1	37	82	0	93	25	17	29	26	1.98
36467362--36467449	38	2.3	38	81	12	103	35	15	20	28	1.94
36472559--36472607	24	2.1	22	85	7	62	53	0	4	42	1.20
36474754--36474785	16	2.0	16	93	0	55	59	6	0	34	1.23
36475006--36475064	31	1.9	31	96	0	109	55	6	6	30	1.52
36475009--36475093	31	2.8	30	84	10	102	56	5	4	32	1.44
36488104--36488137	15	2.2	16	89	5	52	55	5	0	38	1.24
36492441--36492508	30	2.3	30	78	0	73	33	23	14	27	1.94
36495492--36495553	23	2.5	25	74	12	65	20	8	3	67	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36496070--36496113	12	3.7	12	84	9	54	88	6	2	2	0.67
36496070--36496106	17	2.2	16	90	9	56	89	8	0	2	0.58
36496070--36496113	18	2.4	18	88	0	61	88	6	2	2	0.67
36496977--36497237	132	2.0	132	90	1	407	23	21	24	30	1.99
36499876--36499911	13	2.8	13	86	0	54	16	36	25	22	1.94
36501256--36501290	18	1.9	18	88	11	54	71	0	0	28	0.86
36502016--36502045	15	2.1	15	93	6	53	53	0	13	33	1.40
36505432--36505478	23	2.0	24	84	12	62	34	2	0	63	1.06
36510693--36510739	24	2.0	24	91	0	76	25	12	6	55	1.61
36510701--36510755	24	2.3	24	83	0	65	29	14	7	49	1.70
36516920--36516967	24	2.0	24	84	8	62	64	2	4	29	1.23
36516954--36516983	6	4.8	6	92	8	51	83	0	0	16	0.65
36516925--36516975	23	2.2	24	82	6	61	70	1	1	25	1.08
36517063--36517112	23	2.2	23	85	7	66	72	6	0	22	1.07
36524813--36525223	49	8.3	49	74	7	305	17	27	18	36	1.93
36524836--36525180	98	3.5	96	78	6	345	17	27	18	36	1.93
36525035--36525400	49	7.3	51	75	7	227	17	26	18	37	1.92
36525173--36525352	100	1.8	100	87	0	270	16	27	17	37	1.92
36525221--36525501	51	5.6	50	69	10	153	16	25	18	38	1.92
36525186--36525501	151	2.1	151	87	0	452	16	25	18	39	1.91
36529412--36529450	6	6.5	6	93	0	60	48	0	28	23	1.51
36529552--36529651	38	2.5	40	71	14	100	25	18	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36529554--36529688	37	3.4	39	71	12	98	22	19	25	31	1.98
36542150--36542354	90	2.3	90	90	1	313	24	19	27	27	1.99
36543987--36544047	24	2.5	24	83	0	77	52	9	11	26	1.68
36546170--36546208	18	2.2	18	90	0	60	46	0	5	48	1.24
36547015--36547072	26	2.4	24	85	8	73	55	6	0	37	1.27
36547075--36547110	17	2.1	18	94	5	65	58	0	0	41	0.98
36547387--36547422	18	2.0	18	100	0	72	44	0	27	27	1.55
36551605--36551647	18	2.4	18	88	7	61	53	0	0	46	1.00
36559070--36559096	10	2.7	10	100	0	54	44	0	0	55	0.99
36560465--36561089	309	2.0	310	98	0	1198	27	8	19	43	1.80
36566464--36566497	16	2.1	17	88	5	52	79	0	0	20	0.73
36569120--36569183	30	2.1	31	82	8	78	50	7	3	39	1.47
36573407--36573439	2	17.5	2	87	12	52	51	0	0	48	1.00
36573919--36573972	28	2.0	27	82	7	65	33	3	0	62	1.12
36575652--36575683	16	2.0	16	93	0	55	37	6	3	53	1.42
36577580--36577622	17	2.6	17	82	10	54	32	0	2	65	1.06
36583956--36583982	6	4.5	6	100	0	54	85	0	14	0	0.61
36599528--36599585	22	2.6	22	81	13	57	72	5	12	10	1.26
36603540--36603580	14	2.9	14	100	0	82	34	7	21	36	1.82
36610347--36610390	15	2.9	15	79	0	52	65	4	0	29	1.12
36611452--36611488	11	3.4	11	88	0	56	62	8	10	18	1.52
36616853--36616897	23	2.0	23	86	8	65	62	2	4	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36617435--36617460	6	4.3	6	100	0	52	19	15	46	19	1.85
36617652--36617679	13	2.2	13	100	0	56	53	0	7	39	1.28
36618495--36618554	31	1.9	31	83	6	77	41	11	13	33	1.80
36622915--36622971	20	2.8	20	76	23	57	49	1	3	45	1.29
36623815--36623839	7	3.6	7	100	0	50	44	0	12	44	1.41
36629286--36629322	6	6.2	6	100	0	74	32	32	35	0	1.58
36629292--36629332	18	2.3	18	86	0	55	39	31	26	2	1.70
36650010--36650059	17	3.0	16	80	8	55	60	4	0	36	1.16
36661259--36661304	22	2.1	22	88	4	67	23	6	6	63	1.43
36663538--36663615	29	2.6	31	73	18	76	42	17	5	34	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193