genome.fa.s4.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  135  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42588527--42588567	15	2.5	17	80	11	59	65	0	0	34	0.93
42588527--42588581	24	2.3	24	87	0	74	63	1	0	34	1.05
42589972--42590032	26	2.6	22	70	20	52	49	6	0	44	1.28
42590821--42590848	6	4.7	6	100	0	56	35	0	64	0	0.94
42594749--42594773	13	1.9	13	100	0	50	8	8	4	80	1.03
42595773--42595819	24	2.0	24	83	8	60	29	0	2	68	1.02
42595930--42595997	30	2.3	30	83	16	81	64	1	0	33	1.02
42595929--42596001	32	2.4	31	80	19	82	64	1	0	34	1.02
42597688--42597732	22	2.0	22	87	8	65	57	4	0	37	1.19
42602598--42602854	29	8.8	29	67	22	103	34	3	28	33	1.73
42602607--42602710	30	3.5	30	72	16	92	35	2	26	34	1.72
42602633--42602855	59	3.8	59	80	10	269	34	2	28	34	1.70
42602633--42602855	116	1.9	118	85	6	310	34	2	28	34	1.70
42602787--42602884	30	3.3	29	74	20	71	34	3	27	34	1.73
42602633--42602899	116	2.3	117	82	8	303	34	2	28	34	1.70
42603370--42603408	17	2.2	18	86	13	55	5	15	0	79	0.90
42604523--42604581	6	10.3	6	71	10	52	49	1	1	47	1.21
42604550--42604590	17	2.4	17	91	0	64	56	2	0	41	1.13
42608873--42608912	18	2.2	18	86	4	53	20	17	45	17	1.86
42608951--42608992	16	2.6	16	92	0	66	23	11	35	28	1.91
42608967--42609031	28	2.3	28	91	0	103	23	13	36	26	1.92
42609556--42609922	98	3.8	98	80	2	398	16	22	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42609564--42610068	49	10.4	49	70	8	296	16	22	19	40	1.91
42609636--42609775	47	2.9	48	72	8	142	20	22	18	39	1.93
42609556--42609922	194	1.9	194	82	0	464	16	22	19	41	1.90
42609738--42610068	146	2.3	147	89	0	511	16	23	20	40	1.91
42609556--42609970	98	4.3	96	78	4	350	16	22	19	41	1.90
42611157--42611293	23	6.0	22	79	11	134	43	21	22	13	1.87
42611176--42611327	46	3.2	45	79	10	137	42	20	24	12	1.86
42611204--42611327	23	5.3	23	86	5	151	43	21	23	11	1.85
42613360--42613390	12	2.6	12	100	0	62	9	19	16	54	1.68
42619102--42619146	15	2.9	16	90	6	74	26	24	28	20	1.99
42619473--42619866	60	6.5	61	78	9	339	30	18	14	36	1.91
42619617--42619866	122	2.0	123	89	6	384	28	19	15	36	1.92
42619917--42620070	62	2.5	62	86	2	211	25	21	18	34	1.96
42623721--42624202	86	5.6	86	93	2	785	44	5	4	45	1.47
42623721--42624202	255	1.9	259	92	2	821	44	5	4	45	1.47
42625187--42625238	18	2.7	20	72	19	56	26	1	0	71	0.97
42626578--42626645	28	2.3	29	85	5	84	27	11	2	57	1.49
42627460--42627579	60	2.1	58	84	4	152	39	14	17	29	1.89
42627541--42627725	98	1.9	94	86	6	264	39	11	17	31	1.85
42627638--42627903	60	4.4	60	83	7	319	36	14	18	30	1.91
42627988--42628021	16	2.0	18	88	11	54	50	11	5	32	1.63
42628347--42628385	20	2.0	20	89	0	60	53	10	7	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42629835--42629878	20	2.2	20	84	4	54	43	6	13	36	1.71
42636713--42636738	6	4.3	6	100	0	52	84	0	0	15	0.62
42637514--42637544	9	3.4	9	100	0	62	38	0	0	61	0.96
42639722--42639759	3	12.7	3	100	0	76	31	0	34	34	1.58
42643817--42643845	3	10.0	3	92	7	51	31	0	0	68	0.89
42644666--42644738	36	2.0	36	100	0	146	32	16	21	28	1.95
42645355--42645493	61	2.3	61	86	6	183	42	14	5	37	1.69
42654642--42654695	22	2.3	23	78	15	56	31	1	5	61	1.30
42655679--42655720	22	1.9	22	100	0	84	16	7	9	66	1.42
42655684--42655733	22	2.3	22	82	6	57	24	6	8	62	1.46
42661639--42661668	5	5.8	5	92	7	51	83	0	0	16	0.65
42662116--42662156	21	2.0	21	85	4	57	36	26	7	29	1.83
42677597--42677667	31	2.3	31	83	9	83	60	5	2	30	1.34
42677622--42677680	21	2.8	22	75	14	61	64	5	0	30	1.15
42680365--42680432	12	5.8	12	75	17	54	60	17	4	17	1.52
42680365--42680463	47	2.1	46	83	5	119	59	19	4	17	1.53
42680646--42680744	31	3.2	31	69	8	76	44	4	15	36	1.65
42680788--42680851	31	2.1	31	82	5	76	18	6	17	57	1.60
42680782--42680851	6	11.3	6	74	10	52	20	5	17	57	1.60
42680782--42680844	18	3.4	18	79	12	58	20	4	17	57	1.58
42699592--42699631	19	2.1	19	85	0	53	62	7	7	22	1.47
42702567--42702639	30	2.4	29	76	15	76	45	15	8	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42702576--42702634	29	2.0	30	90	3	93	44	15	8	32	1.76
42707856--42707893	18	2.1	18	90	9	60	55	13	5	26	1.59
42710307--42710393	37	2.3	37	88	6	120	56	4	1	37	1.28
42713574--42713632	29	2.0	29	96	0	109	38	6	5	49	1.52
42716485--42716542	30	1.9	30	82	10	73	60	15	5	18	1.53
42716518--42716595	22	3.5	22	78	0	75	62	16	8	11	1.52
42721248--42721378	2	65.5	2	100	0	262	0	49	0	50	1.00
42725693--42725731	17	2.3	17	90	0	60	15	12	25	46	1.81
42726495--42726576	6	14.8	6	68	21	54	46	0	3	50	1.19
42726514--42726576	11	5.6	11	71	17	58	46	0	4	49	1.23
42726495--42726577	17	5.1	17	77	10	84	45	0	3	50	1.19
42727158--42727210	21	2.8	18	73	15	52	47	0	1	50	1.12
42727225--42727266	22	2.0	20	90	9	66	52	0	0	47	1.00
42728239--42728528	29	10.0	28	68	17	112	31	28	2	36	1.72
42728257--42728557	58	5.1	59	83	4	358	31	28	2	37	1.70
42728479--42728558	29	2.8	28	74	14	81	36	23	0	40	1.55
42728257--42728573	117	2.7	117	80	7	385	32	27	2	37	1.71
42734099--42734165	24	2.8	24	77	13	66	77	5	11	4	1.09
42735462--42735964	50	10.3	49	68	15	238	36	20	28	14	1.92
42735452--42735699	101	2.5	100	88	1	352	37	19	28	14	1.91
42735613--42735785	86	2.0	86	94	0	301	37	22	27	12	1.90
42735699--42735930	100	2.3	101	92	2	389	37	21	27	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42735750--42735964	50	4.3	49	78	8	245	36	19	28	14	1.92
42735749--42736054	150	2.0	151	87	1	436	38	20	25	15	1.91
42736413--42736505	11	8.5	11	72	17	68	45	0	3	51	1.17
42736413--42736505	6	16.8	6	68	20	60	45	0	3	51	1.17
42736413--42736506	17	5.7	17	76	9	97	44	0	3	52	1.17
42738261--42738485	29	7.6	29	74	17	112	33	26	4	35	1.75
42738261--42738421	59	2.7	58	83	6	148	34	27	3	34	1.75
42738319--42738511	90	2.2	90	89	2	291	33	24	3	37	1.73
42738319--42738511	30	6.5	31	74	20	160	33	24	3	37	1.73
42738405--42738539	59	2.3	60	78	11	154	34	22	5	37	1.77
42745448--42745514	20	3.2	21	83	12	77	41	1	1	55	1.18
42745465--42745510	19	2.3	19	88	7	65	41	0	0	58	0.98
42748268--42748385	17	6.9	16	73	11	83	43	1	5	50	1.34
42748307--42748385	6	13.5	6	76	10	74	44	2	3	49	1.34
42749012--42749046	16	2.3	15	90	5	52	45	2	2	48	1.32
42750070--42750151	30	2.7	30	86	0	119	40	24	0	35	1.56
42750128--42750316	59	3.3	56	73	9	159	29	28	4	37	1.78
42762060--42762864	76	11.0	75	88	6	970	33	16	19	30	1.94
42762150--42762778	38	17.4	37	66	17	277	33	16	19	30	1.94
42762402--42762590	31	5.7	31	68	17	130	33	17	19	29	1.95
42762365--42762785	69	5.9	69	92	3	569	35	16	19	29	1.93
42762620--42762825	38	5.4	37	69	13	159	35	15	17	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42762803--42762947	40	3.3	40	70	22	121	31	17	20	31	1.96
42762791--42762958	91	1.8	91	94	0	300	30	17	20	31	1.96
42762792--42762994	91	2.2	91	88	2	284	31	20	18	30	1.96
42763261--42763378	17	6.9	16	73	11	83	43	1	5	50	1.34
42763300--42763378	6	13.5	6	76	10	74	44	2	3	49	1.34
42764005--42764039	16	2.2	16	90	5	54	45	2	0	51	1.16
42764947--42765233	30	9.6	30	79	7	255	37	21	3	37	1.71
42764977--42765241	90	3.0	90	88	1	372	37	22	3	36	1.70
42765214--42765407	59	3.3	57	75	5	201	29	28	4	37	1.76
42767141--42767165	3	8.3	3	100	0	50	32	36	0	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193