genome.fa.s4.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  148  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46193387--46193487	47	2.2	46	82	5	114	8	6	18	65	1.43
46193399--46193768	178	2.1	179	94	1	647	14	7	15	62	1.51
46193606--46193664	23	2.5	23	75	8	57	10	8	16	64	1.48
46193574--46193664	47	2.0	45	82	4	110	10	8	15	64	1.48
46203581--46203670	29	3.0	30	75	12	94	51	0	5	43	1.25
46205261--46205298	6	6.3	6	82	11	51	47	0	0	52	1.00
46207191--46207387	59	3.4	59	86	4	258	34	25	2	37	1.70
46207180--46207352	30	6.0	28	71	14	111	34	26	1	37	1.67
46207848--46207990	39	3.7	39	74	10	141	26	28	19	25	1.99
46207843--46207994	78	2.0	77	89	3	234	26	27	19	26	1.99
46207866--46208053	78	2.4	77	84	5	234	26	29	17	26	1.97
46208150--46209032	205	4.4	200	86	2	1133	35	19	22	22	1.96
46214215--46214519	29	10.6	28	65	16	115	34	2	28	34	1.70
46214213--46214508	59	5.1	59	83	5	336	35	2	28	34	1.70
46214332--46214482	28	5.3	28	68	21	98	38	0	27	33	1.62
46214502--46214533	16	1.9	17	93	6	57	37	0	25	37	1.56
46215393--46215637	59	4.2	59	83	0	294	33	24	3	37	1.73
46215543--46215636	30	3.2	29	72	15	86	36	23	2	38	1.67
46225607--46225655	17	2.7	18	81	15	57	20	20	2	57	1.51
46233919--46233953	9	3.9	9	100	0	70	31	11	11	45	1.76
46237150--46237184	16	2.2	16	100	0	70	51	22	5	20	1.68
46240614--46240646	14	2.4	14	90	10	50	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46242695--46243243	49	11.2	49	69	10	316	36	18	24	19	1.94
46242646--46243262	98	6.3	98	85	1	754	36	19	25	18	1.94
46243233--46243367	49	2.8	48	86	2	171	31	20	31	15	1.94
46243605--46243720	40	2.9	41	84	2	157	33	29	13	23	1.93
46243711--46243815	46	2.3	46	86	1	149	36	21	19	22	1.95
46245716--46245776	31	1.9	31	86	3	86	19	4	3	72	1.18
46263782--46263957	30	5.9	30	83	10	209	38	21	1	39	1.61
46263789--46263976	59	3.1	59	85	6	236	37	23	1	37	1.65
46275838--46276164	39	8.5	39	69	15	169	24	31	18	24	1.98
46275835--46276161	155	2.1	154	89	1	485	24	31	18	25	1.98
46275838--46276200	155	2.3	155	83	2	435	25	31	18	24	1.97
46275838--46276161	77	4.2	79	85	3	437	24	31	18	25	1.98
46276408--46276481	37	2.0	37	89	0	112	33	14	22	28	1.94
46278308--46278407	30	3.3	30	86	5	130	35	23	4	38	1.73
46278308--46278424	30	3.9	29	80	10	110	35	23	5	36	1.77
46278300--46278432	60	2.2	60	82	0	167	36	22	4	36	1.75
46281084--46281172	45	2.0	45	90	0	142	25	32	13	28	1.94
46283676--46283709	12	2.6	13	90	9	52	50	11	11	26	1.73
46283983--46284066	42	2.0	42	83	4	107	50	14	2	33	1.56
46284583--46284618	19	1.9	19	88	5	56	13	13	22	50	1.77
46287811--46287867	21	2.7	21	75	5	62	33	28	10	28	1.90
46290638--46290673	18	2.0	18	100	0	72	38	11	16	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46293530--46293574	22	2.0	23	83	12	58	37	2	0	60	1.09
46302983--46303019	19	2.0	18	89	5	56	45	2	0	51	1.15
46302983--46303037	20	2.8	19	84	10	67	47	1	0	50	1.11
46302998--46303037	20	2.0	20	95	0	71	52	0	0	47	1.00
46313419--46313456	20	1.9	20	94	0	67	50	0	2	47	1.15
46313419--46313456	11	3.6	11	82	13	53	50	0	2	47	1.15
46314491--46314515	12	2.1	12	100	0	50	0	0	40	60	0.97
46315351--46315650	30	10.0	30	75	12	199	36	20	3	40	1.68
46315371--46315611	89	2.7	88	82	6	299	36	19	3	40	1.70
46315371--46315610	59	4.1	59	81	8	281	35	20	3	40	1.70
46317239--46317306	30	2.3	30	92	2	120	47	1	0	51	1.09
46317684--46317708	12	2.1	12	100	0	50	52	40	0	8	1.31
46329023--46329068	2	23.5	2	95	4	85	50	0	0	50	1.00
46329791--46329882	30	3.1	30	80	3	132	34	21	4	39	1.73
46329806--46329912	29	3.7	29	82	2	142	35	18	5	40	1.74
46329780--46329911	59	2.2	59	93	2	230	37	18	4	38	1.72
46331431--46331463	17	1.9	18	88	11	52	45	0	12	42	1.41
46332226--46332262	19	1.9	19	100	0	74	32	16	13	37	1.87
46333126--46333210	38	2.2	38	80	12	93	65	8	0	25	1.20
46333358--46333476	12	10.2	12	70	16	72	68	17	6	6	1.34
46333338--46333476	44	3.1	44	78	11	129	67	19	5	7	1.35
46333341--46333445	24	4.5	24	75	12	103	66	20	4	7	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46333437--46333482	21	2.1	23	84	8	60	67	13	8	10	1.42
46333964--46333998	18	1.9	18	94	0	61	37	25	11	25	1.90
46334716--46334907	99	2.0	96	90	3	303	22	30	9	37	1.86
46335485--46335519	18	1.9	18	94	0	61	25	14	22	37	1.92
46336142--46336182	20	2.0	20	85	0	55	26	12	26	34	1.92
46336398--46336450	20	2.7	20	90	0	79	26	9	32	32	1.88
46336597--46336661	33	2.0	33	87	3	96	35	23	6	35	1.80
46339263--46339311	20	2.5	20	75	0	53	32	10	26	30	1.89
46339519--46339571	20	2.7	20	90	0	79	26	9	32	32	1.88
46339685--46339762	28	2.7	29	96	4	149	50	0	0	50	1.00
46339707--46339754	13	3.5	13	78	10	60	52	0	0	47	1.00
46348046--46348080	16	2.2	16	90	10	54	45	5	11	37	1.64
46350757--46350785	12	2.4	12	100	0	58	17	34	0	48	1.47
46359221--46359268	21	2.3	20	85	7	60	37	0	0	62	0.95
46363467--46363917	228	2.0	230	95	0	825	38	6	9	45	1.63
46364850--46365057	39	5.4	39	81	2	240	25	19	19	35	1.96
46366013--46366066	21	2.6	21	93	0	90	33	27	14	24	1.94
46370796--46370848	21	2.5	21	78	0	61	1	30	0	67	1.01
46375084--46375294	37	5.7	37	89	0	314	15	19	31	34	1.93
46375101--46375237	21	7.2	21	63	25	81	15	21	30	32	1.94
46384604--46384660	20	2.7	21	76	15	64	52	1	5	40	1.34
46384608--46384723	18	6.5	18	66	15	62	53	2	7	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46384702--46384757	13	4.2	13	72	17	51	58	1	5	33	1.31
46387066--46387112	21	2.3	20	85	3	58	31	25	2	40	1.68
46387230--46387525	158	1.9	158	83	2	389	28	22	22	25	1.99
46390529--46390804	137	2.0	137	93	0	471	35	26	9	27	1.88
46393388--46393430	18	2.4	18	88	7	61	18	13	48	18	1.80
46394828--46394868	20	2.0	20	86	9	57	29	17	0	53	1.44
46395651--46395699	25	2.0	25	95	0	89	26	22	20	30	1.98
46401358--46401514	74	2.1	74	97	0	296	38	19	7	34	1.79
46401368--46401492	40	3.3	39	63	18	100	41	19	8	31	1.80
46401743--46401789	17	2.8	17	93	0	76	51	14	19	14	1.77
46424344--46424369	13	2.0	13	100	0	52	30	23	15	30	1.95
46428697--46428725	14	2.1	14	100	0	58	31	20	13	34	1.92
46428882--46428939	27	2.2	26	79	14	64	58	0	36	5	1.20
46429360--46429401	16	2.5	17	80	7	50	16	11	11	59	1.61
46435026--46435063	20	1.9	20	84	10	51	42	28	0	28	1.56
46440566--46441388	111	7.4	111	80	5	716	46	5	10	38	1.61
46440566--46441388	28	29.7	28	77	4	684	46	5	10	38	1.61
46441405--46441776	28	13.3	28	81	2	372	35	12	6	44	1.69
46441405--46441776	84	4.4	83	82	2	422	35	12	6	44	1.69
46442513--46443861	28	48.8	28	74	8	318	45	4	10	38	1.61
46442515--46444261	56	31.3	56	71	12	337	45	4	11	38	1.61
46442506--46444261	84	21.0	82	70	13	750	45	5	11	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46443220--46443566	186	1.9	186	80	6	416	46	5	9	38	1.61
46443889--46444257	55	6.7	55	77	10	297	46	4	11	36	1.62
46443864--46444261	28	14.3	28	76	8	294	46	4	11	36	1.62
46444649--46444936	156	1.8	156	91	0	477	32	18	14	34	1.91
46444805--46445537	291	2.5	286	82	4	947	30	22	13	33	1.93
46445378--46445699	156	2.0	157	88	1	484	32	19	13	33	1.92
46446112--46446433	156	2.0	157	89	1	502	31	19	14	33	1.92
46446273--46450445	291	14.4	291	87	2	5495	29	21	15	33	1.94
46444328--46447007	734	3.7	733	96	0	4710	29	22	14	33	1.93
46446273--46450445	576	7.2	577	86	3	5444	29	21	15	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193