genome.fa.s4.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  183  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57123258--57123282	2	12.5	2	100	0	50	52	0	0	48	1.00
57128239--57128281	17	2.8	16	82	10	54	53	4	0	41	1.21
57133840--57133874	7	5.0	7	96	0	61	17	40	14	28	1.88
57140759--57140799	18	2.3	18	100	0	82	43	14	4	36	1.67
57144067--57144134	31	2.3	30	82	5	75	39	14	11	33	1.83
57144316--57144369	24	2.2	24	83	0	63	59	0	3	37	1.15
57147864--57147888	7	3.6	7	100	0	50	88	0	0	12	0.53
57162631--57162655	9	2.8	9	100	0	50	24	32	0	44	1.54
57163829--57163874	24	1.9	24	86	0	65	43	17	10	28	1.82
57165759--57165797	9	4.3	9	86	0	60	46	12	7	33	1.71
57165865--57165915	21	2.6	19	79	11	57	64	7	0	27	1.21
57169339--57169382	22	2.0	22	86	8	63	36	0	2	61	1.09
57171129--57171178	24	2.0	26	84	7	68	44	14	10	32	1.78
57177913--57177961	16	3.2	16	75	16	59	34	0	6	59	1.22
57178230--57178372	46	3.2	46	64	24	113	45	8	2	44	1.45
57178156--57178506	93	3.8	94	90	6	556	47	12	1	38	1.51
57178478--57178520	21	2.1	21	86	4	61	58	13	2	25	1.48
57179312--57179369	22	2.6	21	76	13	53	58	3	3	34	1.32
57183418--57183497	19	3.8	19	72	19	54	60	0	5	35	1.19
57186204--57186293	23	4.0	22	79	4	99	11	22	25	41	1.86
57187778--57187827	22	2.2	23	82	10	59	46	16	16	22	1.84
57190450--57190494	14	3.1	14	83	3	63	28	15	0	55	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57190524--57190557	17	2.0	17	88	0	50	61	8	8	20	1.52
57190852--57190907	13	4.2	13	76	13	51	39	12	1	46	1.52
57190861--57190907	14	3.4	14	77	13	53	40	14	2	42	1.58
57196322--57196406	20	4.1	21	82	11	97	25	24	14	35	1.93
57197151--57197176	13	2.0	13	100	0	52	38	0	0	61	0.96
57198337--57198363	2	13.5	2	100	0	54	0	51	0	48	1.00
57221293--57221319	13	2.1	13	100	0	54	48	14	0	37	1.45
57222626--57222706	31	2.7	30	84	5	101	46	11	8	33	1.70
57222626--57222706	29	2.7	28	81	11	90	46	11	8	33	1.70
57222927--57222988	10	5.9	10	75	7	52	24	4	4	66	1.31
57229636--57229681	22	2.1	22	92	4	76	36	8	6	47	1.60
57234523--57234616	48	2.0	48	89	0	143	26	17	25	30	1.97
57237874--57237912	12	3.2	12	88	3	60	48	0	51	0	1.00
57237874--57237908	6	5.8	6	93	0	61	45	0	54	0	0.99
57238716--57238835	32	3.6	32	68	18	84	50	5	3	40	1.43
57238706--57238839	67	2.0	69	91	2	218	49	6	2	41	1.44
57239408--57239447	20	2.0	20	100	0	80	30	25	5	40	1.77
57239416--57239459	20	2.2	20	83	0	52	38	20	4	36	1.73
57239986--57240025	16	2.5	16	79	0	53	40	27	12	20	1.88
57240942--57241102	57	2.8	58	79	3	173	31	21	22	24	1.98
57243792--57243839	2	24.0	2	87	8	71	47	4	47	0	1.21
57245854--57245887	18	1.9	18	88	5	52	17	5	2	73	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57248280--57248327	24	2.0	24	91	0	78	45	14	18	20	1.85
57256297--57256326	14	2.1	15	93	6	53	13	16	0	70	1.18
57257923--57257983	29	2.1	29	82	14	74	55	8	4	31	1.50
57259007--57259048	19	2.2	19	87	8	59	33	0	2	64	1.07
57262876--57262905	14	2.1	14	93	0	51	16	0	23	60	1.36
57266557--57266667	23	4.8	23	84	3	125	38	19	13	27	1.90
57266587--57266680	23	4.0	24	83	8	77	41	17	13	27	1.87
57266683--57266708	4	6.5	4	100	0	52	76	23	0	0	0.78
57266766--57266823	24	2.4	24	91	0	89	44	17	17	20	1.86
57266766--57266825	12	5.0	12	85	4	77	43	16	16	23	1.87
57267031--57267145	50	2.3	50	82	4	135	53	9	2	34	1.48
57267427--57267454	13	2.2	13	100	0	56	39	14	17	28	1.89
57268453--57268509	30	1.9	30	89	7	89	35	10	7	47	1.65
57268453--57268502	13	3.5	13	78	19	55	38	10	4	48	1.56
57268868--57268911	17	2.5	17	82	13	54	36	0	2	61	1.09
57274370--57274420	6	8.5	6	82	0	57	50	0	49	0	1.00
57274373--57274438	18	3.7	18	81	6	71	50	1	45	3	1.26
57274373--57274423	21	2.4	21	90	0	66	50	1	47	0	1.12
57275669--57275694	9	2.9	9	100	0	52	34	23	0	42	1.54
57275986--57276010	4	6.2	4	100	0	50	24	0	24	52	1.48
57276467--57276491	12	2.1	12	100	0	50	32	16	36	16	1.90
57280017--57280083	33	2.1	33	83	8	84	55	4	2	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57281228--57281277	21	2.4	20	77	9	55	24	4	32	40	1.73
57282904--57283444	94	5.8	94	93	2	876	39	0	11	48	1.45
57283639--57283688	16	3.2	16	71	21	52	60	6	0	34	1.21
57283721--57283822	30	3.4	30	62	9	73	36	4	12	46	1.64
57285556--57285586	15	2.1	15	93	0	53	41	0	58	0	0.98
57285687--57285733	21	2.2	21	88	7	69	21	34	17	27	1.95
57288840--57288890	4	12.2	4	80	15	59	0	31	0	68	0.90
57288841--57288891	13	3.7	13	78	14	57	0	31	0	68	0.90
57289060--57289116	27	2.1	27	96	0	105	12	31	22	33	1.91
57298177--57298210	17	2.0	17	88	0	50	52	0	0	47	1.00
57299334--57299359	1	26.0	1	100	0	52	0	100	0	0	0.00
57301584--57301660	39	2.0	39	92	0	127	22	9	1	67	1.26
57301515--57301657	20	7.4	19	71	12	80	30	4	1	64	1.21
57303069--57303127	27	2.2	27	84	0	73	18	30	20	30	1.96
57303087--57303146	27	2.3	27	85	2	77	21	23	18	36	1.95
57307265--57307290	3	8.7	3	100	0	52	69	0	0	30	0.89
57312175--57312205	10	2.9	11	90	9	55	61	0	9	29	1.28
57316999--57317159	23	6.9	23	83	6	166	40	23	24	10	1.86
57320052--57320081	14	2.1	14	100	0	60	73	0	0	26	0.84
57320043--57320086	23	1.9	23	86	9	63	77	0	2	20	0.88
57320185--57320256	16	4.5	16	89	0	117	37	5	29	27	1.79
57320267--57320342	39	1.9	39	84	10	102	27	5	26	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57320426--57320562	57	2.3	59	85	7	181	48	1	1	48	1.19
57324861--57324916	26	2.2	26	100	0	112	19	26	14	39	1.90
57326237--57326276	15	2.7	15	96	0	71	55	12	20	12	1.69
57326781--57326831	6	8.5	6	97	0	84	33	11	0	54	1.37
57327552--57327615	29	2.1	31	80	11	71	34	3	7	54	1.45
57328337--57328378	21	2.0	21	95	0	75	57	4	16	21	1.58
57329090--57329128	20	2.0	20	84	0	51	41	2	5	51	1.38
57334718--57334808	20	4.6	20	77	4	85	31	7	13	47	1.71
57335076--57335118	18	2.4	18	88	7	61	53	0	0	46	1.00
57336092--57336136	18	2.4	19	82	14	58	66	2	0	31	1.04
57336243--57336290	9	5.2	9	78	14	53	33	0	2	64	1.05
57337981--57338005	13	1.9	13	100	0	50	28	16	8	48	1.74
57340662--57340715	26	2.0	27	86	13	76	53	7	0	38	1.29
57350847--57351080	39	5.9	39	71	12	172	20	9	40	29	1.84
57350849--57351097	42	6.2	41	72	13	180	19	9	41	28	1.83
57350805--57351035	117	1.9	119	93	2	403	17	11	40	30	1.84
57351015--57351103	39	2.4	36	78	10	97	22	8	42	25	1.83
57352926--57352954	2	15.0	2	92	7	51	51	0	0	48	1.00
57354916--57354959	18	2.4	19	84	3	54	52	9	0	38	1.33
57355091--57355139	18	2.6	20	75	9	50	22	0	6	71	1.08
57359772--57359834	17	3.6	17	74	14	65	33	0	1	65	1.03
57359772--57359833	18	3.5	18	75	14	58	32	0	1	66	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57360348--57360389	21	2.0	22	86	13	63	69	4	2	23	1.20
57360527--57360571	22	2.0	22	83	8	56	64	8	6	20	1.44
57364375--57364715	50	6.9	49	72	14	243	17	27	17	36	1.93
57364375--57364723	99	3.5	99	91	0	545	17	27	17	36	1.93
57378476--57378520	17	2.7	16	90	10	72	0	4	24	71	1.05
57378476--57378522	18	2.6	18	89	3	76	0	4	23	72	1.02
57378476--57378522	19	2.6	19	93	6	80	0	4	23	72	1.02
57378503--57378547	23	1.9	24	81	4	56	4	4	22	68	1.25
57378533--57378574	20	2.1	20	90	0	66	9	0	14	76	1.02
57378535--57378636	23	4.5	22	73	10	82	8	2	18	69	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193