genome.fa.s4.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  134  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42214211--42214244	3	11.3	3	87	0	50	58	2	0	38	1.13
42214367--42214447	31	2.6	31	88	3	110	35	4	13	45	1.65
42214572--42214659	31	2.9	31	74	1	88	43	11	10	35	1.75
42220752--42220778	4	6.8	4	100	0	54	77	0	0	22	0.76
42221180--42221241	32	1.9	32	87	6	90	14	1	38	45	1.55
42221188--42221243	16	3.5	16	78	7	60	10	1	37	50	1.48
42221190--42221251	33	1.9	32	83	3	79	14	1	37	46	1.54
42222630--42222669	21	1.9	21	84	0	53	37	5	15	42	1.68
42225525--42225587	31	2.0	31	90	0	99	47	14	6	31	1.69
42225931--42225969	20	2.0	20	84	0	51	58	12	2	25	1.47
42231741--42231784	22	2.0	22	100	0	88	31	22	4	40	1.74
42248126--42248197	16	4.5	16	87	0	108	37	4	29	29	1.76
42248179--42248272	44	2.1	46	84	7	122	31	5	25	37	1.78
42248367--42248512	58	2.5	56	82	11	179	50	1	2	46	1.21
42254119--42254178	15	4.1	15	85	6	79	36	15	15	33	1.88
42257959--42257991	16	2.1	16	94	0	57	54	9	18	18	1.69
42258274--42258306	12	2.6	13	90	4	50	48	3	0	48	1.17
42264334--42264376	17	2.6	16	82	17	52	65	0	2	32	1.06
42264308--42264378	16	4.1	17	75	21	60	61	0	4	33	1.15
42267403--42267452	14	3.2	16	77	13	59	46	0	0	54	1.00
42271556--42271580	12	2.1	12	100	0	50	32	0	16	52	1.44
42275888--42275929	20	2.1	20	86	0	57	69	16	9	4	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42276389--42276419	6	5.2	6	100	0	62	0	16	0	83	0.64
42276957--42277033	23	3.2	24	71	8	68	48	0	3	48	1.20
42280017--42280064	25	2.0	24	91	4	78	56	0	4	39	1.19
42287995--42288067	31	2.4	31	85	0	92	52	12	8	27	1.67
42288480--42288522	23	1.9	22	85	4	59	62	2	2	32	1.20
42298202--42298250	20	2.3	21	82	10	55	28	8	2	61	1.36
42304971--42305032	27	2.3	27	100	0	124	9	25	41	22	1.84
42304987--42305050	27	2.4	27	83	0	74	17	32	35	14	1.89
42306018--42306050	16	2.0	17	94	5	59	42	0	0	57	0.98
42306042--42306069	13	2.2	13	100	0	56	50	0	0	50	1.00
42307924--42307954	6	5.2	6	100	0	62	16	35	32	16	1.91
42308387--42308439	6	8.8	6	83	8	72	18	1	13	66	1.34
42308512--42308588	26	2.9	26	74	3	64	55	9	1	33	1.39
42311741--42311781	20	1.9	23	85	14	61	31	7	0	60	1.24
42311890--42311957	27	2.5	27	97	0	127	27	26	25	20	1.99
42311909--42311997	27	3.3	27	88	0	115	23	30	29	16	1.97
42313495--42313631	58	2.3	59	81	7	172	23	13	12	50	1.76
42315403--42315441	6	6.3	6	96	3	69	69	15	0	15	1.20
42315382--42315493	47	2.4	47	83	3	127	58	16	2	22	1.51
42317141--42317191	24	2.1	24	85	7	68	31	21	17	29	1.96
42320174--42320202	14	2.1	14	93	6	51	37	0	0	62	0.96
42320481--42320520	19	2.0	20	85	4	55	60	2	5	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42323070--42323101	16	2.0	16	100	0	64	18	31	0	50	1.48
42323536--42323598	24	2.6	24	87	0	90	50	9	14	25	1.72
42325522--42325584	24	2.6	24	87	0	90	49	11	15	23	1.77
42338192--42338230	16	2.4	16	91	0	60	30	10	7	51	1.64
42339339--42339375	13	2.8	13	87	0	56	37	18	8	35	1.81
42339484--42339545	30	2.1	30	96	0	115	32	9	6	51	1.60
42340501--42340648	73	2.0	72	89	3	226	36	4	27	32	1.76
42341601--42341626	6	4.3	6	100	0	52	65	0	19	15	1.27
42341688--42341744	12	4.8	12	84	0	69	50	7	38	3	1.46
42341682--42341754	24	3.0	24	81	0	74	50	5	41	2	1.40
42341703--42341754	12	4.3	12	82	0	59	48	5	44	1	1.38
42351675--42351709	4	8.8	4	93	0	61	20	0	28	51	1.47
42352638--42352679	18	2.3	19	87	4	59	26	14	0	59	1.35
42354669--42354731	24	2.7	24	80	4	67	55	3	3	38	1.32
42356681--42356721	20	2.0	20	85	0	55	29	17	4	48	1.67
42359364--42359395	3	10.7	3	100	0	64	34	0	0	65	0.93
42363794--42363841	24	2.0	24	91	0	78	27	6	6	60	1.45
42363799--42363857	24	2.4	25	80	8	68	27	11	6	54	1.62
42366922--42366946	12	2.1	12	100	0	50	24	60	0	16	1.36
42375658--42375696	2	20.0	2	89	5	53	48	5	0	46	1.24
42393299--42393348	17	2.9	17	75	21	59	38	0	4	58	1.17
42407023--42407062	16	2.5	17	84	15	59	65	0	17	17	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42410476--42410549	37	2.0	37	97	0	139	36	8	9	45	1.66
42413220--42413258	20	1.9	21	89	5	62	51	0	0	48	1.00
42413488--42413540	6	8.7	6	76	12	54	0	18	3	77	0.92
42420555--42420593	17	2.3	17	86	0	51	17	12	23	46	1.83
42420635--42420683	23	2.2	22	82	10	55	63	4	10	22	1.43
42425087--42425128	18	2.3	18	83	0	57	50	0	2	47	1.14
42437586--42437634	26	1.9	25	87	4	71	32	4	2	61	1.26
42453751--42453791	16	2.5	17	81	18	52	36	2	2	58	1.24
42460913--42461007	49	1.9	49	97	0	181	42	9	12	35	1.76
42470768--42470819	24	2.2	24	85	0	68	55	7	3	32	1.46
42472840--42472900	23	2.6	24	92	2	97	57	1	16	24	1.48
42473278--42473390	29	3.9	27	78	14	102	35	20	4	39	1.73
42473278--42473370	30	3.2	28	79	13	98	34	18	5	41	1.73
42473283--42473390	28	3.7	29	78	11	96	36	21	3	38	1.71
42473278--42473405	58	2.2	58	82	9	145	32	20	5	41	1.75
42475120--42475167	24	2.0	24	91	0	78	54	4	6	35	1.45
42475493--42475517	3	8.3	3	100	0	50	32	68	0	0	0.90
42475659--42475694	14	2.5	14	95	4	63	25	8	30	36	1.85
42481026--42481098	13	5.5	13	67	15	51	41	0	5	53	1.24
42481038--42481070	16	2.1	16	94	5	59	39	0	0	60	0.97
42487205--42487265	25	2.3	27	86	8	81	54	0	1	44	1.10
42489981--42490019	20	2.0	20	94	0	69	33	10	5	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42494636--42494668	2	16.5	2	100	0	66	48	0	0	51	1.00
42498011--42498058	23	2.0	24	84	11	64	56	10	8	25	1.61
42498017--42498064	24	2.1	22	88	7	69	54	8	10	27	1.63
42498789--42498820	16	2.0	16	100	0	64	25	18	18	37	1.94
42498790--42498829	16	2.5	16	91	0	62	30	17	12	40	1.86
42502271--42502330	29	2.1	29	87	6	86	33	8	10	48	1.67
42502427--42502509	31	2.7	31	77	5	89	40	10	10	37	1.75
42507338--42507376	18	2.1	19	85	4	53	64	0	2	33	1.08
42511245--42511278	6	5.7	6	100	0	68	52	17	14	14	1.74
42517527--42517566	21	1.9	21	94	0	71	17	7	15	60	1.57
42518312--42518369	24	2.5	24	88	2	82	36	0	13	50	1.42
42524690--42524744	28	2.0	28	92	0	92	30	16	29	23	1.96
42525436--42525490	21	2.6	21	85	0	74	27	12	30	29	1.93
42533142--42533210	32	2.2	32	80	10	81	31	1	2	63	1.18
42533174--42533229	23	2.4	24	87	3	78	26	0	3	69	1.04
42533889--42533944	22	2.5	23	80	8	62	58	3	0	37	1.15
42534288--42534328	19	2.3	18	87	8	57	31	7	7	53	1.56
42534739--42534769	16	1.9	16	93	0	53	22	0	16	61	1.34
42534772--42534883	51	2.2	51	81	0	125	36	13	8	41	1.76
42537517--42537542	8	3.2	8	100	0	52	76	11	0	11	1.01
42538900--42538930	13	2.4	13	94	0	53	41	0	0	58	0.98
42550218--42550277	31	1.9	32	86	3	86	48	18	3	30	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42550218--42550316	29	3.3	30	78	4	92	42	22	3	32	1.69
42550590--42550660	29	2.4	30	83	9	92	47	14	2	35	1.58
42552511--42552537	2	13.5	2	100	0	54	0	0	48	51	1.00
42561545--42561580	18	2.1	18	89	5	56	47	5	8	38	1.57
42564756--42564985	101	2.3	100	86	2	327	42	23	11	22	1.86
42569881--42570078	58	3.3	59	81	10	199	28	18	15	37	1.92
42570129--42570369	59	4.1	59	78	7	247	34	14	21	29	1.93
42571314--42571387	38	1.9	38	91	0	121	16	13	22	47	1.81
42573050--42573144	42	2.2	42	90	5	147	22	6	7	64	1.42
42578949--42579146	98	2.0	98	95	0	351	29	9	13	47	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193