genome.fa.s4.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  118  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37498419--37498473	28	2.0	28	92	0	92	30	16	29	23	1.96
37506695--37506753	18	3.3	18	90	0	91	49	11	28	10	1.72
37506676--37506753	36	2.1	37	85	2	104	52	8	30	7	1.61
37509192--37509228	17	2.1	18	90	5	58	24	5	8	62	1.44
37516535--37516599	32	2.0	32	100	0	130	30	36	3	29	1.73
37519475--37519538	13	5.1	13	73	5	51	32	6	23	37	1.80
37520409--37520448	21	2.0	19	85	9	53	50	0	20	30	1.49
37523554--37523612	24	2.5	24	82	0	73	50	10	11	27	1.71
37523566--37523616	24	2.1	24	88	0	75	58	7	9	23	1.56
37524040--37524087	2	24.0	2	100	0	96	50	0	0	50	1.00
37532514--37532657	46	3.1	46	60	25	104	38	19	14	27	1.90
37532466--37532790	92	3.5	92	93	3	550	36	19	17	26	1.94
37532592--37532747	52	3.2	52	66	23	158	38	18	16	26	1.91
37533078--37533136	6	9.8	6	73	14	50	38	5	1	54	1.33
37533094--37533120	14	1.9	14	100	0	54	37	11	0	51	1.37
37533341--37533392	26	2.0	26	85	7	70	19	42	19	19	1.90
37535030--37535122	29	3.2	28	70	22	75	35	22	2	39	1.66
37535030--37535394	59	6.2	59	82	6	420	33	26	2	37	1.70
37535030--37535394	117	3.1	116	84	5	441	33	26	2	37	1.70
37535139--37535394	29	8.8	28	67	25	113	33	28	1	35	1.67
37547595--37547738	40	3.3	40	65	25	103	36	18	19	25	1.94
37547635--37548069	52	9.3	51	60	26	160	37	19	17	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37547110--37548109	92	10.9	92	93	4	1693	36	20	16	26	1.94
37548399--37548457	6	9.8	6	73	14	50	38	5	1	54	1.33
37548415--37548441	14	1.9	14	100	0	54	37	11	0	51	1.37
37548660--37548711	26	2.0	26	85	7	70	19	42	19	19	1.90
37549784--37549821	11	3.5	11	85	7	51	13	31	44	10	1.77
37549937--37549978	5	8.2	5	91	2	66	21	54	21	2	1.56
37550422--37550677	29	8.7	28	70	24	147	33	28	3	33	1.76
37550451--37550556	31	3.5	31	71	21	98	34	24	2	37	1.70
37550363--37550679	58	5.4	59	85	6	367	33	27	4	34	1.77
37553053--37553127	24	2.9	24	76	18	71	42	1	1	54	1.17
37555406--37555461	16	3.5	16	87	0	85	37	1	28	32	1.68
37555640--37555801	64	2.7	57	83	9	146	49	3	2	44	1.33
37555699--37555829	63	2.1	64	98	1	255	51	4	1	42	1.31
37561578--37561618	21	2.0	21	85	0	55	19	12	14	53	1.72
37565715--37565744	10	3.1	10	95	4	53	33	36	0	30	1.58
37565917--37565977	30	2.0	31	83	3	79	37	0	1	60	1.07
37567914--37568020	4	26.8	4	78	3	108	66	2	5	25	1.27
37567919--37568020	28	3.6	28	88	2	143	66	2	4	25	1.26
37568024--37568074	4	12.8	4	89	0	75	54	1	0	43	1.11
37569426--37569463	16	2.4	16	95	0	67	39	0	26	34	1.57
37578229--37578282	21	2.6	20	80	14	65	42	1	0	55	1.10
37579811--37579844	10	3.5	10	88	8	52	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37585802--37585842	22	1.9	21	85	5	55	19	7	14	58	1.59
37589359--37589406	23	2.1	23	84	0	60	22	29	16	31	1.96
37590600--37590636	19	2.0	18	89	5	56	24	5	0	70	1.08
37593865--37593991	23	5.5	22	76	14	76	11	21	21	45	1.83
37593866--37593991	46	2.7	48	80	8	134	11	21	20	46	1.83
37594304--37594435	65	2.0	65	98	0	255	33	13	18	34	1.90
37594488--37594552	32	2.0	32	96	0	121	52	0	13	33	1.41
37594489--37594550	19	3.5	19	67	26	55	50	0	14	35	1.43
37607000--37607034	2	17.0	2	88	5	52	48	2	2	45	1.32
37611116--37611168	17	3.1	18	89	5	74	56	7	0	35	1.28
37611170--37611230	20	3.2	18	76	15	59	59	3	0	37	1.14
37619030--37619205	89	2.0	89	94	2	309	60	9	11	18	1.58
37619867--37619893	2	13.5	2	100	0	54	48	0	0	51	1.00
37624003--37624056	27	2.0	27	100	0	108	29	18	11	40	1.85
37626139--37626163	11	2.3	11	100	0	50	88	0	12	0	0.53
37626740--37626791	21	2.5	21	73	17	54	38	0	13	48	1.43
37627262--37627412	78	1.9	78	97	0	284	37	8	13	40	1.75
37634191--37634230	18	2.3	17	91	4	62	10	27	0	62	1.27
37642731--37642923	49	3.9	49	81	6	201	23	21	18	36	1.95
37644054--37644090	18	2.1	18	89	0	56	24	27	0	48	1.51
37651396--37651451	17	3.3	17	73	26	64	39	1	39	19	1.62
37656937--37657024	17	5.3	17	71	28	82	38	2	39	19	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37656936--37657024	32	2.7	32	94	5	160	39	2	39	19	1.64
37656936--37657032	34	2.9	33	95	3	169	40	3	38	18	1.66
37668634--37668714	42	1.9	42	84	0	108	38	23	19	18	1.93
37668671--37668767	50	1.9	50	82	0	122	36	19	23	20	1.95
37668791--37669003	40	5.3	40	78	6	225	32	26	15	25	1.95
37668816--37669043	40	5.7	40	81	2	255	32	25	15	25	1.96
37668790--37669042	80	3.2	79	87	4	348	32	26	15	26	1.95
37672088--37672133	24	1.9	24	95	0	83	28	21	15	34	1.94
37680222--37680279	28	2.1	27	93	3	98	39	6	0	53	1.28
37686410--37686466	28	2.1	26	90	6	87	26	22	10	40	1.86
37686638--37686829	31	6.4	30	67	18	114	46	13	16	23	1.82
37688010--37688054	20	2.2	20	84	8	54	40	0	2	57	1.11
37689084--37689487	30	13.6	30	77	3	282	35	23	2	39	1.67
37689084--37689487	60	6.8	60	76	6	311	35	23	2	39	1.67
37699265--37699315	22	2.3	21	86	6	66	78	1	7	11	1.04
37699619--37699660	21	2.0	20	86	4	57	26	0	40	33	1.56
37699619--37699660	20	2.0	21	86	4	59	26	0	40	33	1.56
37699989--37700360	30	12.6	30	82	3	398	34	25	2	37	1.68
37702990--37703062	32	2.3	32	97	0	137	41	20	27	10	1.86
37704404--37704444	7	5.9	7	82	0	55	48	24	0	26	1.51
37705394--37705585	96	2.0	96	80	4	217	38	14	17	30	1.89
37705836--37706046	29	7.2	29	66	16	103	34	1	29	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37705798--37706047	59	4.3	59	84	2	306	36	2	28	34	1.69
37705797--37705900	30	3.5	30	71	9	86	40	1	23	34	1.66
37707676--37707716	17	2.4	18	76	12	50	56	7	0	36	1.27
37708054--37708556	201	2.5	201	92	0	848	19	22	22	36	1.95
37720330--37720698	58	6.3	58	78	10	378	37	2	24	34	1.71
37720330--37720698	117	3.2	115	84	5	447	37	2	24	34	1.71
37722342--37722417	17	4.5	17	73	5	73	51	5	2	40	1.38
37722328--37722417	34	2.6	34	75	6	92	48	5	2	43	1.38
37726814--37727112	158	1.9	158	86	1	429	22	22	25	30	1.99
37729979--37730073	24	3.8	25	74	12	81	30	27	22	20	1.98
37730003--37730098	24	4.0	24	78	8	113	28	26	23	21	1.99
37734420--37734533	24	4.7	24	75	6	104	30	21	22	24	1.99
37734421--37734539	49	2.5	48	81	9	127	31	22	22	23	1.99
37737693--37737779	20	4.3	19	75	21	79	59	4	0	35	1.18
37737694--37737778	21	4.2	20	71	13	59	58	4	0	36	1.19
37737770--37737834	29	2.3	26	78	19	69	56	3	1	38	1.24
37738196--37738236	1	41.0	1	90	0	64	2	95	2	0	0.33
37741668--37741714	21	2.2	22	85	7	62	51	0	4	44	1.21
37745176--37745228	21	2.5	21	93	6	90	45	0	0	54	0.99
37745179--37745228	25	2.0	25	88	7	75	46	0	0	54	1.00
37745171--37745217	18	2.8	16	84	15	60	51	0	0	48	1.00
37752388--37752452	21	3.1	21	93	2	105	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37752383--37752429	18	2.8	16	84	15	60	51	0	0	48	1.00
37755186--37755291	41	2.5	42	81	3	133	38	10	24	26	1.87
37772516--37773305	406	1.9	402	81	7	936	42	15	15	25	1.87
37776386--37776437	23	2.3	23	83	6	63	69	1	9	19	1.26
37778810--37779021	29	7.2	29	69	18	109	34	2	29	33	1.70
37779050--37779141	28	3.2	28	69	10	78	34	3	31	30	1.74
37778810--37779286	117	4.0	123	81	9	382	35	2	30	32	1.70
37778805--37779298	57	8.4	57	80	11	514	34	2	30	32	1.71
37780308--37780378	27	2.6	27	86	4	90	40	8	1	49	1.42
37781040--37781107	6	11.2	6	75	19	61	50	0	4	45	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193