genome.fa.s4.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  113  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36209267--36209291	2	12.5	2	100	0	50	48	0	0	52	1.00
36210425--36210479	25	2.2	26	78	15	62	40	3	1	54	1.28
36217892--36217960	7	10.0	7	76	3	59	33	23	21	21	1.97
36217891--36217960	21	3.4	21	82	2	88	34	22	21	21	1.97
36223329--36223423	30	3.2	30	73	19	99	37	3	24	34	1.71
36223317--36223630	59	5.1	59	77	11	283	34	1	29	34	1.69
36223317--36223618	118	2.5	123	80	8	339	33	1	29	35	1.68
36223320--36223531	30	7.2	30	64	20	88	36	1	26	34	1.68
36224712--36224759	26	1.9	26	87	8	73	41	6	0	52	1.27
36224736--36224781	19	2.5	19	89	3	67	43	4	0	52	1.21
36225498--36225549	17	3.1	17	83	10	70	51	3	3	40	1.38
36225498--36225564	34	1.9	35	87	3	100	50	5	4	38	1.47
36225937--36226454	200	2.6	200	87	4	736	20	22	20	36	1.95
36235483--36235887	59	6.9	59	80	7	423	36	1	27	34	1.67
36235550--36235865	117	2.7	119	86	7	416	36	1	26	34	1.66
36235550--36235861	29	10.7	28	68	21	135	37	1	26	34	1.67
36236799--36236846	26	1.9	26	87	8	73	41	6	0	52	1.27
36236823--36236868	19	2.5	19	89	3	67	43	4	0	52	1.21
36237583--36237651	17	4.0	16	74	20	59	53	2	2	40	1.31
36237582--36237650	11	5.8	12	72	14	63	53	1	2	42	1.24
36237582--36237650	6	11.7	6	73	14	63	53	1	2	42	1.24
36237582--36237665	42	2.0	42	83	4	107	52	3	3	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36238311--36238368	30	1.9	30	96	0	107	43	31	5	20	1.74
36239470--36239504	12	2.9	12	88	12	54	60	0	0	40	0.97
36240703--36240766	21	3.0	21	84	4	85	32	26	21	18	1.97
36240703--36240766	7	9.1	7	82	0	74	32	26	21	18	1.97
36241346--36241403	30	2.0	30	86	3	82	37	0	6	55	1.27
36241622--36241656	18	1.9	18	100	0	70	57	17	8	17	1.64
36243554--36243880	29	11.2	29	64	25	122	33	30	2	33	1.72
36243548--36243925	59	6.5	59	86	3	498	32	30	2	34	1.72
36243548--36243925	117	3.2	117	85	3	503	32	30	2	34	1.72
36246912--36247040	23	5.5	23	80	5	134	13	22	20	44	1.86
36246952--36247087	69	2.0	69	85	11	190	11	22	21	44	1.84
36252477--36252553	5	16.0	5	74	17	58	40	0	0	59	0.97
36252477--36252553	23	3.2	25	85	9	81	40	0	0	59	0.97
36252479--36252547	23	3.0	23	93	0	111	40	0	0	59	0.97
36257388--36257440	26	2.0	26	85	7	72	52	0	0	47	1.00
36258656--36258723	34	2.0	34	97	0	127	42	5	23	27	1.77
36261465--36261494	6	5.0	6	95	0	51	50	36	0	13	1.42
36261465--36261503	18	2.2	18	85	0	51	51	35	2	10	1.50
36265908--36265954	11	4.3	11	77	20	53	51	0	0	48	1.00
36265908--36265959	16	3.2	15	77	17	59	50	1	0	48	1.12
36266768--36266808	21	1.9	22	85	5	57	36	2	0	60	1.10
36267615--36267658	16	2.9	15	77	9	54	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36270354--36270495	71	2.0	71	100	0	284	26	32	8	32	1.86
36271654--36271680	2	13.5	2	100	0	54	51	0	0	48	1.00
36277309--36277369	27	2.2	27	88	2	86	27	8	27	36	1.85
36277442--36277663	29	7.7	29	74	12	116	35	4	26	34	1.76
36277467--36277693	58	3.9	59	79	6	239	35	3	26	35	1.72
36277494--36277692	29	6.8	30	75	11	164	35	3	26	35	1.72
36280432--36280471	21	1.9	21	89	0	62	57	0	12	30	1.36
36280479--36280519	21	2.0	21	90	0	64	43	7	12	36	1.70
36280602--36280630	14	2.1	14	100	0	58	51	13	0	34	1.42
36282325--36282364	19	2.1	19	86	9	55	30	12	2	55	1.50
36286137--36286226	17	5.3	17	69	9	58	42	2	4	51	1.34
36286201--36286239	17	2.2	17	86	4	51	46	5	5	43	1.48
36288161--36288416	29	8.8	29	76	10	191	37	26	3	32	1.75
36288222--36288584	59	6.4	59	78	13	329	34	27	4	33	1.76
36288249--36288538	88	3.4	88	71	15	241	36	26	3	33	1.75
36288191--36288527	29	11.8	29	72	15	222	36	26	3	33	1.75
36288335--36288539	109	1.9	109	87	6	308	35	27	3	33	1.75
36290584--36290628	16	2.8	16	79	3	54	57	11	0	31	1.33
36293347--36293388	11	3.7	11	81	15	50	66	2	0	30	1.04
36298194--36298233	2	20.0	2	100	0	80	50	0	0	50	1.00
36298551--36298584	10	3.5	10	84	8	52	29	0	5	64	1.17
36298866--36298903	9	4.2	9	93	0	67	39	0	34	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36303858--36303910	27	2.0	27	82	14	65	47	0	1	50	1.12
36303898--36303930	15	2.2	15	94	0	57	30	0	0	69	0.88
36304085--36304118	2	17.0	2	88	11	52	50	0	2	47	1.16
36304085--36304118	9	3.4	10	88	12	52	50	0	2	47	1.16
36306911--36306970	28	2.1	28	81	6	68	66	5	8	20	1.37
36307191--36307270	17	4.7	17	90	0	124	40	0	5	55	1.22
36307191--36307272	6	14.3	6	72	19	68	41	0	4	53	1.22
36309153--36309544	29	13.4	30	76	12	295	36	25	2	36	1.68
36316022--36317037	506	2.0	506	98	0	1951	32	18	22	26	1.97
36321628--36321674	24	1.9	24	86	4	67	25	23	4	46	1.70
36322391--36322804	39	10.6	39	69	10	202	22	29	21	26	1.99
36322270--36322765	78	6.4	78	82	1	550	24	30	20	25	1.99
36322270--36322826	156	3.6	153	80	5	511	24	30	19	25	1.98
36323270--36323326	16	3.4	16	76	13	62	42	0	3	54	1.17
36323282--36323351	6	12.3	6	73	19	53	38	0	5	55	1.24
36323270--36323347	17	4.7	17	84	4	97	39	0	5	55	1.22
36323270--36323342	33	2.2	34	80	11	98	41	0	4	54	1.19
36324027--36324134	17	6.3	17	88	4	155	40	0	2	55	1.21
36324051--36324134	6	14.5	6	76	16	88	41	1	1	55	1.15
36324057--36324112	11	4.9	11	82	10	60	39	1	1	57	1.20
36325556--36325867	29	10.7	29	73	15	198	33	27	1	37	1.67
36325556--36325792	30	8.1	29	77	9	178	32	28	1	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36325559--36325867	58	5.3	58	80	7	272	33	26	1	38	1.66
36325598--36325910	58	5.4	58	82	4	294	31	27	2	37	1.71
36325598--36325909	116	2.7	115	83	5	369	32	27	2	37	1.70
36327961--36328075	29	4.0	28	77	15	117	35	26	1	35	1.67
36328141--36328216	28	2.7	28	85	4	100	35	25	3	35	1.74
36328082--36328232	28	5.3	28	70	12	94	37	25	2	35	1.70
36333144--36333207	30	2.1	31	82	8	78	46	3	1	48	1.27
36334123--36334167	23	2.0	23	100	0	90	48	4	4	42	1.43
36336369--36336411	21	2.0	21	83	16	54	44	4	32	18	1.71
36342273--36342395	23	5.4	22	87	3	138	11	23	21	43	1.85
36342274--36342395	46	2.7	46	88	2	174	11	23	21	43	1.85
36342297--36342441	69	2.1	66	85	12	186	12	23	20	44	1.85
36342294--36342395	23	4.4	23	92	0	168	11	21	22	44	1.85
36343444--36343755	59	5.4	58	91	3	477	35	4	28	31	1.76
36343444--36343755	117	2.7	118	91	2	497	35	4	28	31	1.76
36343912--36344223	162	1.9	162	91	1	511	46	13	16	24	1.82
36345724--36345822	6	16.8	6	77	15	100	51	1	0	47	1.07
36345727--36345832	17	6.4	17	79	9	94	51	1	0	46	1.11
36345746--36345813	11	6.2	11	77	16	70	54	1	0	44	1.09
36345786--36345840	27	2.0	27	89	0	83	54	5	0	40	1.23
36346155--36346902	276	2.7	271	91	4	1216	26	20	17	34	1.95
36346155--36346889	203	3.6	203	93	2	1231	26	21	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36346155--36346889	68	10.8	68	91	3	1210	26	21	17	34	1.95
36358754--36359046	30	9.9	30	84	2	351	36	2	23	37	1.68
36358754--36359046	59	4.9	59	85	5	351	36	2	23	37	1.68
36358754--36359045	89	3.3	89	88	4	403	36	2	23	37	1.68
36359710--36359759	21	2.4	21	83	9	68	6	12	4	78	1.08
36360820--36360913	6	15.7	6	72	16	70	47	1	3	47	1.25
36360853--36360913	24	2.6	23	85	12	88	54	1	1	42	1.20
36363213--36363253	20	2.0	20	90	0	64	46	4	2	46	1.37
36366282--36366321	21	1.9	21	85	10	55	22	17	10	50	1.76
36366854--36366888	17	2.1	17	100	0	70	48	5	5	40	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193