genome.fa.s4.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  93  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30148611--30149093	244	2.0	244	89	0	734	37	17	22	22	1.94
30148986--30149199	107	2.0	107	85	1	286	36	17	21	24	1.94
30151019--30151066	20	2.5	19	71	18	53	20	6	2	70	1.19
30157207--30157254	21	2.3	20	86	13	62	29	12	29	29	1.93
30162044--30162072	12	2.5	12	94	5	51	6	0	37	55	1.27
30176589--30176774	27	7.1	26	72	10	139	28	15	19	36	1.92
30176602--30176774	52	3.3	52	84	0	229	28	15	20	35	1.93
30176601--30176782	25	7.0	26	72	7	111	27	14	21	35	1.93
30177583--30177764	27	7.0	27	77	8	162	28	14	22	35	1.93
30177624--30177772	25	5.8	25	76	6	127	26	14	24	34	1.93
30177597--30177764	52	3.2	52	88	0	246	27	13	23	35	1.93
30175986--30178344	990	2.4	988	94	1	4105	29	13	20	35	1.92
30178445--30178487	21	2.0	20	86	8	59	27	16	20	34	1.94
30182633--30182667	9	3.9	9	100	0	70	54	0	0	45	0.99
30182673--30182714	20	2.0	21	90	4	68	28	0	2	69	1.01
30182673--30182715	9	4.4	9	80	13	50	30	0	2	67	1.03
30182682--30182792	45	2.6	41	81	17	120	35	0	3	61	1.14
30182738--30182778	19	2.2	19	86	4	57	39	0	2	58	1.11
30183523--30183563	21	2.0	21	90	0	64	53	7	7	31	1.56
30188497--30188527	3	10.3	3	100	0	62	67	0	0	32	0.91
30191696--30191731	18	2.0	18	94	0	63	80	5	5	8	1.01
30193485--30193526	22	1.9	22	100	0	84	26	16	14	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30198022--30198064	21	2.0	23	90	9	72	53	0	0	46	1.00
30197989--30198061	28	2.5	28	91	4	119	50	0	0	49	1.00
30198704--30198752	20	2.4	20	83	10	55	48	2	0	48	1.12
30198704--30198746	22	2.0	21	86	4	59	51	2	0	46	1.13
30197869--30199115	682	1.8	677	90	2	2014	37	12	12	36	1.82
30199253--30199286	7	4.9	7	100	0	68	14	0	41	44	1.45
30200748--30200882	29	4.6	28	73	17	89	34	3	25	36	1.74
30200752--30200865	29	3.9	29	79	16	112	35	2	25	35	1.70
30202745--30202854	17	6.4	16	79	13	96	52	3	1	41	1.29
30202745--30202822	6	13.5	6	70	12	56	50	2	2	44	1.29
30202776--30202822	23	2.0	23	88	8	69	53	4	0	42	1.20
30202745--30202854	52	2.1	52	86	0	148	52	3	1	41	1.29
30202764--30202819	11	4.9	11	77	14	51	55	3	3	37	1.35
30203491--30203562	27	2.7	27	85	8	101	41	9	26	22	1.84
30204773--30204816	22	2.0	22	95	0	79	45	6	20	27	1.76
30206617--30206650	14	2.5	14	90	4	52	44	0	0	55	0.99
30206750--30206788	19	2.1	19	85	0	51	58	2	0	38	1.12
30206864--30207022	71	2.2	72	85	4	207	40	8	6	45	1.59
30213418--30213569	30	5.1	30	79	3	162	36	2	21	39	1.67
30213419--30213573	60	2.6	60	83	4	179	38	2	20	39	1.66
30219742--30219771	14	2.1	15	93	6	53	20	20	23	36	1.95
30219708--30219811	54	1.9	52	88	9	156	22	21	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30219757--30220788	79	13.1	79	77	10	742	25	17	24	31	1.97
30219886--30220292	157	2.6	158	78	8	407	24	19	25	31	1.98
30219780--30220788	276	3.6	275	80	7	906	25	17	24	31	1.97
30219802--30220788	40	25.0	40	77	8	778	25	17	24	31	1.97
30220810--30220921	40	2.8	40	83	4	129	30	14	18	36	1.91
30220822--30221326	39	12.9	39	76	9	359	26	16	23	32	1.96
30220872--30221326	79	5.8	79	79	6	478	26	16	24	32	1.96
30220872--30221327	156	2.9	157	80	6	532	26	16	24	32	1.96
30222809--30222859	5	9.8	5	78	21	52	0	19	0	80	0.71
30222809--30222877	28	2.6	28	84	6	81	4	15	0	79	0.88
30222808--30222855	20	2.6	18	84	15	62	0	20	0	79	0.74
30222814--30222858	8	5.5	8	78	5	54	0	20	0	80	0.72
30223753--30223785	13	2.4	14	90	5	50	0	12	3	84	0.72
30223753--30223785	7	4.9	7	85	7	50	0	12	3	84	0.72
30227256--30227300	23	2.0	23	90	0	72	28	24	31	15	1.96
30235999--30236767	123	6.4	122	84	4	832	23	23	16	37	1.94
30236920--30237198	50	5.7	49	77	5	195	18	32	15	33	1.92
30236934--30237104	49	3.5	49	83	4	202	18	32	15	33	1.92
30238149--30238201	18	2.9	18	78	10	63	1	15	5	77	1.04
30240005--30240094	44	1.9	44	82	13	108	52	3	4	40	1.38
30241096--30241524	59	7.3	58	82	6	483	33	30	1	35	1.68
30241096--30241523	58	7.3	58	81	8	460	33	29	1	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30241096--30241487	29	13.5	28	67	23	147	33	30	1	35	1.67
30241416--30241507	29	3.2	28	70	14	71	36	26	1	35	1.64
30247677--30248334	58	11.3	58	86	4	819	33	29	2	34	1.71
30250806--30250962	71	2.2	71	90	0	242	33	24	21	20	1.97
30254804--30254829	10	2.6	10	100	0	52	53	0	23	23	1.46
30256145--30256191	13	3.4	14	82	14	53	0	8	19	72	1.10
30257158--30257617	123	3.7	122	85	4	552	23	24	16	36	1.94
30257774--30258051	104	2.8	97	77	6	227	17	31	16	34	1.92
30257774--30258052	50	5.6	50	76	10	228	17	31	16	34	1.92
30259867--30259891	13	1.9	13	100	0	50	16	12	8	64	1.49
30263840--30263865	10	2.6	10	100	0	52	53	0	23	23	1.46
30265707--30265745	18	2.2	18	86	9	53	20	23	0	56	1.42
30266750--30266787	16	2.2	18	90	9	62	42	0	0	57	0.98
30273586--30273629	2	22.5	2	90	4	63	45	0	4	50	1.22
30281584--30281624	22	1.9	21	90	5	64	24	17	36	21	1.94
30282865--30282904	16	2.4	17	87	8	64	72	12	0	15	1.12
30286998--30287035	15	2.5	15	100	0	76	47	0	7	44	1.32
30288899--30289451	138	4.0	138	88	0	748	30	13	24	30	1.94
30296402--30296467	3	22.7	3	71	22	52	1	30	1	66	1.10
30296408--30296446	14	2.5	15	88	12	53	2	33	2	61	1.23
30303574--30303607	18	1.9	17	88	5	50	55	8	11	23	1.63
30306703--30306946	52	4.8	52	81	7	275	32	24	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30313989--30314139	52	2.9	53	75	14	134	31	23	15	28	1.96
30325282--30325526	52	4.7	52	84	4	307	32	22	15	28	1.95
30339732--30339776	19	2.5	19	89	7	67	15	13	8	62	1.54
30339732--30339781	17	2.8	17	80	16	57	14	12	10	64	1.51
30347556--30347604	19	2.6	19	77	9	55	40	6	0	53	1.26
30351723--30351765	13	3.2	14	83	12	63	34	30	6	27	1.83
30351879--30351946	27	2.5	26	79	11	75	47	11	8	32	1.71
30352245--30352284	21	1.9	21	89	0	62	40	22	10	27	1.86
30355098--30355167	4	17.5	4	77	11	63	67	1	30	1	1.08
30358157--30358195	14	2.8	14	92	0	60	25	0	25	48	1.51
30358450--30358496	21	2.2	21	85	7	60	25	14	38	21	1.92
30360452--30360501	16	3.2	16	73	21	52	34	0	6	60	1.21
30361402--30361445	6	7.5	6	89	5	63	0	45	0	54	0.99
30361402--30361468	3	21.7	3	73	11	55	0	41	0	58	0.98
30361402--30361484	17	4.9	17	82	10	75	0	38	0	61	0.96
30361447--30361512	4	17.8	4	80	17	56	0	25	0	74	0.82
30361408--30361512	21	5.1	21	77	14	80	0	33	0	66	0.92
30361471--30361506	13	2.6	14	86	8	56	0	22	0	77	0.76
30362510--30362545	15	2.4	15	90	0	54	38	25	8	27	1.84
30365139--30365193	21	2.4	24	85	8	71	16	12	32	38	1.86
30367759--30367818	21	2.9	21	82	0	66	33	25	15	26	1.95
30368960--30369012	21	2.5	21	76	11	56	33	24	11	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30370806--30370847	22	2.0	22	86	9	61	38	14	0	47	1.44
30372080--30372129	20	2.5	20	81	15	50	42	14	0	44	1.44
30393977--30394035	21	2.7	23	80	15	72	30	27	16	25	1.97
30396569--30396752	37	5.0	37	83	2	210	38	28	19	13	1.89
30396611--30396675	16	3.8	16	70	18	58	35	26	21	16	1.95
30396634--30396696	21	3.2	21	65	21	55	36	28	22	12	1.91
30397012--30397071	28	2.1	28	100	0	120	45	13	3	38	1.60
30403361--30403421	19	3.1	19	73	13	59	24	18	37	19	1.94
30405063--30405123	30	2.0	30	100	0	122	29	29	16	24	1.96
30417066--30417289	37	5.9	36	78	9	164	37	31	20	11	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193