genome.fa.s4.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  152  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47407730--47407762	15	2.1	17	88	11	52	63	0	0	36	0.95
47408367--47408473	17	6.3	17	75	7	92	35	1	6	56	1.36
47408412--47408472	23	2.7	23	85	7	72	34	0	6	59	1.24
47408416--47408474	28	2.1	28	84	6	75	35	0	6	57	1.25
47408399--47408473	11	6.6	11	72	7	53	37	1	5	56	1.31
47408434--47408491	28	2.1	28	83	6	73	39	0	6	53	1.28
47410056--47410123	33	2.1	33	83	8	86	19	13	7	60	1.56
47410400--47410595	29	6.7	29	68	16	102	33	28	3	34	1.75
47410431--47410532	30	3.5	29	71	21	79	34	27	3	34	1.75
47410400--47410599	58	3.4	59	81	10	225	34	28	3	33	1.74
47410520--47410624	28	3.7	27	72	9	84	35	29	3	31	1.75
47414024--47414122	28	3.5	29	75	15	100	38	4	26	31	1.75
47414020--47414130	28	3.9	29	72	16	81	38	4	26	30	1.76
47413958--47414130	57	3.0	57	83	5	197	38	4	26	30	1.77
47413995--47414151	57	2.7	57	86	4	183	39	3	24	32	1.73
47414133--47414301	60	2.8	59	89	5	241	40	0	18	40	1.56
47414108--47414301	90	2.2	89	88	3	282	40	1	17	40	1.56
47414124--47414302	30	5.9	31	83	6	208	40	0	17	40	1.54
47421537--47421613	32	2.3	34	84	8	106	63	6	3	25	1.36
47421720--47421802	17	4.9	17	86	0	103	42	0	3	54	1.18
47421727--47421793	6	11.7	6	79	9	77	43	0	2	53	1.16
47421727--47421793	11	5.8	12	79	10	77	43	0	2	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47422988--47423053	27	2.5	27	80	11	84	12	24	53	10	1.69
47423068--47423101	16	2.0	18	88	11	54	8	23	50	17	1.74
47423622--47423742	30	4.0	30	85	4	145	38	23	4	33	1.76
47423634--47423764	30	4.4	29	82	7	120	35	25	3	35	1.74
47423755--47423846	29	3.1	29	63	23	66	32	25	3	39	1.72
47435752--47437153	68	19.9	69	86	8	1906	33	18	19	28	1.95
47435879--47436121	31	7.3	31	67	17	137	34	18	20	26	1.96
47436227--47436337	31	3.4	31	69	18	98	36	18	20	24	1.95
47435752--47437153	216	6.6	204	92	4	1948	33	18	19	28	1.95
47436442--47436621	31	5.4	31	66	17	110	35	18	20	25	1.95
47435752--47437213	500	2.9	500	96	1	2692	33	18	19	28	1.95
47436727--47436837	31	3.4	31	70	18	107	36	18	19	24	1.94
47436942--47437053	31	3.4	31	73	13	116	35	18	20	25	1.95
47437472--47437554	17	4.9	17	86	0	103	42	0	3	54	1.18
47437479--47437545	6	11.7	6	79	9	77	43	0	2	53	1.16
47437479--47437545	11	5.8	12	79	10	77	43	0	2	53	1.16
47437756--47437786	15	2.1	15	100	0	62	19	54	12	12	1.70
47438744--47438809	27	2.5	27	80	11	84	12	24	53	10	1.69
47438824--47438857	16	2.0	18	88	11	54	8	23	50	17	1.74
47439378--47439528	30	5.0	30	89	3	196	36	23	5	33	1.80
47441528--47441560	17	1.9	17	100	0	66	42	15	12	30	1.83
47454473--47454784	157	2.0	156	85	4	423	33	14	19	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47455991--47456339	178	1.9	179	91	1	565	22	12	19	46	1.82
47458890--47458941	24	2.2	24	82	6	61	32	9	28	28	1.89
47458907--47458945	12	3.2	12	86	13	62	25	15	28	30	1.96
47466823--47466868	2	23.0	2	100	0	92	50	0	50	0	1.00
47469685--47469774	46	2.0	46	90	0	144	34	14	15	35	1.88
47470760--47470788	11	2.6	11	100	0	58	17	24	27	31	1.97
47472095--47472127	17	2.0	17	88	5	50	42	6	3	48	1.43
47472479--47472533	28	2.0	27	85	3	74	50	3	1	43	1.30
47473526--47473556	11	2.8	11	100	0	62	74	0	25	0	0.82
47483783--47483881	39	2.5	40	90	3	155	31	19	19	30	1.96
47487424--47487468	19	2.4	19	92	0	81	33	26	22	17	1.96
47488882--47488999	46	2.4	46	78	15	123	42	22	23	11	1.86
47488907--47489010	23	4.4	23	81	4	118	44	21	22	12	1.85
47488909--47489010	48	2.2	46	85	3	132	43	21	22	12	1.86
47488860--47489001	71	2.0	71	85	5	191	43	21	23	11	1.85
47491456--47491554	39	2.5	40	88	6	148	30	16	22	31	1.95
47492304--47492345	17	2.4	18	77	22	54	33	21	16	28	1.95
47497836--47497861	2	13.0	2	100	0	52	50	0	0	50	1.00
47507089--47507191	52	2.0	52	94	0	179	40	12	15	31	1.85
47509236--47509277	18	2.5	18	81	11	54	35	0	4	59	1.19
47509353--47509409	26	2.1	27	84	9	73	63	1	0	35	1.05
47512680--47512705	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47527839--47527884	24	1.9	24	86	0	65	13	23	34	28	1.92
47529091--47529181	29	3.1	29	66	21	82	35	7	28	28	1.85
47529194--47529374	30	6.0	30	94	0	290	34	4	24	35	1.77
47529258--47529312	19	3.3	19	63	36	54	29	3	27	40	1.73
47529468--47529779	162	1.9	162	90	1	502	42	13	17	25	1.87
47530057--47530090	16	2.0	18	88	11	54	17	50	23	8	1.74
47530101--47530151	27	1.9	26	92	4	84	9	47	25	17	1.78
47536448--47536604	29	5.4	29	66	15	99	34	7	29	28	1.85
47536448--47536643	58	3.4	59	83	6	240	33	6	29	30	1.83
47536617--47536815	30	6.6	30	87	1	247	36	3	22	37	1.71
47536617--47536827	90	2.3	91	87	2	300	36	4	22	37	1.74
47536617--47536815	60	3.3	60	90	1	283	36	3	22	37	1.71
47536915--47537228	162	1.9	162	86	1	443	43	13	17	26	1.85
47537561--47537611	27	1.9	26	92	4	84	7	50	27	13	1.69
47538887--47538965	6	13.2	6	79	15	92	50	0	2	46	1.14
47538897--47538958	11	5.7	11	75	21	51	54	0	3	41	1.16
47538887--47538975	17	5.4	17	80	12	89	50	1	2	46	1.21
47538900--47538959	31	1.9	31	93	6	104	53	0	3	43	1.17
47539384--47539452	24	2.9	24	95	0	120	56	8	10	24	1.60
47541114--47541143	16	1.9	16	93	6	53	40	6	6	46	1.56
47542315--47542362	18	2.9	16	82	17	62	77	0	4	18	0.93
47543507--47543546	21	1.9	21	89	0	62	25	17	15	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47543514--47543557	21	2.1	21	82	0	52	27	15	15	40	1.88
47545095--47545141	21	2.2	22	88	3	69	70	0	10	19	1.16
47545115--47545156	16	2.6	16	77	7	50	71	0	9	19	1.13
47545955--47545997	19	2.3	19	84	8	52	58	2	0	39	1.11
47547836--47547886	24	2.1	24	92	0	84	54	9	11	23	1.66
47552610--47552652	18	2.4	18	88	7	61	53	0	0	46	1.00
47555882--47555928	19	2.5	20	82	10	62	61	0	6	31	1.21
47560341--47560381	19	2.1	20	86	13	59	31	24	4	39	1.76
47562407--47562554	73	2.0	73	100	0	296	35	2	14	47	1.59
47569954--47569994	3	13.7	3	94	0	73	31	2	0	65	1.05
47570610--47570652	16	2.8	16	80	16	54	30	2	0	67	1.03
47574382--47574423	21	2.0	22	85	4	59	54	7	7	30	1.54
47579103--47579229	41	3.1	41	63	24	106	25	40	4	29	1.75
47579078--47579237	80	2.0	80	100	0	320	26	42	3	27	1.72
47581031--47581074	20	2.2	20	87	0	61	22	27	11	38	1.88
47581618--47581662	4	11.2	4	90	0	63	46	22	4	26	1.70
47585520--47585616	47	2.0	50	82	6	119	38	6	7	48	1.56
47586585--47586668	29	2.9	28	77	12	80	40	3	25	30	1.72
47586643--47586780	59	2.3	60	84	1	179	42	10	21	26	1.84
47586791--47586926	58	2.3	59	82	5	159	35	5	19	38	1.76
47586812--47586970	29	5.4	29	78	10	153	35	5	22	37	1.78
47586793--47586958	58	2.8	57	80	9	156	36	6	19	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47586774--47586970	29	6.7	29	74	12	120	33	6	22	37	1.79
47588878--47588963	28	3.1	27	79	14	86	54	3	1	40	1.25
47588879--47588949	11	6.4	11	84	12	83	56	2	0	40	1.14
47588878--47588951	5	13.6	5	80	16	76	55	2	0	41	1.14
47588878--47588946	17	4.2	16	85	5	84	56	2	0	40	1.14
47588860--47588964	17	6.2	16	80	7	75	53	3	0	41	1.25
47589273--47589309	3	12.3	3	100	0	74	35	0	0	64	0.94
47590266--47590303	19	2.0	20	89	5	60	55	0	0	44	0.99
47591666--47591731	26	2.5	26	92	4	107	31	19	6	42	1.76
47591975--47592019	23	2.0	23	82	8	56	42	2	0	55	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193