genome.fa.s4.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  36  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11036319--11036686	31	10.6	32	67	22	160	29	19	17	33	1.95
11036123--11036686	68	8.0	69	86	7	708	29	19	16	34	1.94
11048874--11049072	29	6.7	30	69	17	141	35	5	28	31	1.79
11048817--11049072	59	4.4	59	88	1	381	37	5	26	30	1.80
11048863--11049077	30	7.3	28	68	27	126	36	5	26	31	1.79
11049087--11049161	30	2.5	30	95	0	141	38	2	18	40	1.65
11048873--11049131	118	2.2	117	86	6	337	36	4	25	33	1.77
11050383--11050444	19	3.3	19	73	13	56	37	1	3	58	1.24
11050957--11050995	20	2.0	20	85	10	53	15	12	48	23	1.79
11051186--11051254	17	4.1	16	83	12	77	52	2	1	43	1.25
11051203--11051257	6	9.7	6	76	11	62	52	1	1	43	1.22
11051202--11051264	11	5.5	11	83	5	81	53	1	3	41	1.26
11051425--11051469	19	2.4	18	82	10	54	6	20	2	71	1.20
11052566--11052602	20	1.9	20	88	5	58	35	0	0	64	0.94
11052558--11052623	27	2.5	27	82	2	71	30	0	4	65	1.13
11058574--11058599	11	2.4	11	100	0	52	42	7	11	38	1.70
11059123--11059147	7	3.6	7	100	0	50	0	12	0	88	0.53
11060506--11060581	17	4.5	17	78	3	73	46	2	2	48	1.30
11060732--11060921	29	6.4	29	73	13	147	36	28	3	31	1.73
11060742--11060999	59	4.4	59	78	5	256	35	30	2	31	1.72
11060742--11060999	118	2.2	118	88	3	369	35	30	2	31	1.72
11060840--11060991	29	5.2	29	65	20	73	32	30	2	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11065146--11065195	21	2.3	22	79	3	57	42	6	32	20	1.76
11072740--11073674	200	4.8	199	86	8	1309	35	21	23	19	1.96
11072988--11073278	86	3.3	85	67	20	243	34	20	25	19	1.96
11072928--11073669	182	3.9	188	86	9	910	35	21	23	19	1.96
11073259--11073629	188	2.0	189	92	0	618	36	22	22	18	1.95
11074019--11074082	17	3.8	17	71	17	53	45	1	3	50	1.27
11074233--11074289	29	1.9	30	86	10	82	38	28	5	28	1.78
11074269--11074434	59	2.8	59	83	3	185	33	30	3	33	1.73
11074234--11074363	29	4.4	29	68	17	72	34	27	5	32	1.80
11074272--11074452	58	3.1	58	80	6	179	33	29	2	33	1.72
11084627--11084661	16	2.1	17	94	5	63	80	2	17	0	0.84
11085683--11085727	18	2.6	18	96	3	83	60	0	17	22	1.37
11087939--11087979	20	2.1	20	82	13	50	80	2	9	7	0.99
11098698--11098771	23	3.2	23	82	0	76	43	20	16	20	1.88
11100165--11100671	252	2.0	252	89	2	777	23	21	13	41	1.89
11111882--11112446	79	7.2	79	85	4	685	24	19	25	30	1.98
11112487--11112630	50	2.9	50	78	0	135	20	25	18	35	1.95
11129153--11129184	3	10.7	3	100	0	64	65	0	0	34	0.93
11141717--11141759	19	2.2	19	87	4	59	69	6	0	23	1.12
11145970--11146006	18	2.1	18	89	0	56	40	21	10	27	1.86
11146256--11146501	86	2.9	86	91	0	402	20	18	30	31	1.96
11151583--11151860	51	5.5	51	69	11	162	43	8	3	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11151422--11151933	149	3.4	147	85	6	633	43	9	3	43	1.53
11152387--11152426	3	13.3	3	83	0	53	60	2	5	32	1.32
11152745--11152798	21	2.6	21	82	5	65	29	25	14	29	1.95
11156107--11156140	17	2.0	17	94	0	59	32	5	5	55	1.48
11167382--11167411	15	1.9	16	93	6	53	83	0	16	0	0.65
11168429--11168495	32	2.1	32	97	0	125	20	16	13	49	1.79
11180265--11180322	30	1.9	29	83	13	73	37	0	15	46	1.46
11189415--11189475	20	2.9	21	85	9	79	40	22	13	22	1.89
11192812--11192861	18	2.8	18	84	6	66	52	0	2	46	1.12
11201754--11201799	21	2.4	19	79	20	51	56	26	0	17	1.41
11202356--11202385	12	2.5	12	94	0	51	80	13	6	0	0.91
11206876--11206906	13	2.4	13	100	0	62	38	19	6	35	1.77
11207346--11207383	16	2.2	18	86	9	53	47	2	0	50	1.15
11211007--11211048	21	1.9	22	85	9	59	59	0	2	38	1.10
11211085--11211141	17	3.2	17	72	18	53	63	5	1	29	1.27
11212578--11212860	149	1.9	146	84	2	377	39	7	9	42	1.67
11215731--11215887	17	9.4	17	75	7	115	43	21	10	23	1.84
11215740--11215886	51	2.9	51	81	6	165	44	21	10	23	1.82
11220555--11220603	18	2.7	18	81	12	73	34	12	16	36	1.86
11225762--11226141	126	3.0	126	99	0	751	40	5	16	38	1.70
11226598--11226846	113	2.2	113	97	0	471	36	14	14	34	1.86
11227679--11227737	31	1.9	30	83	10	75	38	5	6	49	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11237615--11237653	20	2.0	20	84	0	51	33	10	2	53	1.48
11237893--11238083	103	1.9	103	90	0	310	48	25	5	20	1.72
11239120--11239166	21	2.2	21	77	7	51	23	0	8	68	1.17
11241021--11241067	17	2.7	18	81	15	55	51	0	21	27	1.48
11242374--11242467	29	3.2	29	87	0	134	18	26	30	24	1.97
11242520--11242729	56	3.7	56	69	13	167	30	27	19	23	1.98
11243829--11243881	21	2.5	21	82	11	65	33	24	13	28	1.93
11243935--11243997	21	2.8	22	73	17	58	41	25	6	26	1.79
11245201--11245243	21	2.0	22	86	4	61	32	18	4	44	1.71
11254448--11254505	26	2.2	26	90	0	89	32	15	20	31	1.94
11256650--11256681	16	2.0	16	93	0	55	28	15	12	43	1.83
11257795--11257994	56	3.5	56	71	9	161	34	28	16	22	1.95
11263441--11263490	20	2.5	20	83	9	57	44	14	0	42	1.44
11266562--11266603	20	2.0	21	90	4	68	38	4	2	54	1.34
11272751--11272797	24	2.0	24	91	8	78	21	31	0	46	1.51
11272771--11272812	17	2.4	17	88	4	57	21	26	4	47	1.70
11276362--11276400	19	2.0	20	85	14	55	61	5	0	33	1.18
11281643--11281704	32	1.9	32	86	0	88	56	12	6	24	1.60
11284899--11284942	21	2.1	21	83	8	54	25	22	15	36	1.94
11286782--11286814	13	2.4	14	85	5	50	30	0	6	63	1.18
11288346--11288395	22	2.3	22	89	0	82	52	8	18	22	1.71
11303219--11303263	19	2.4	19	81	7	56	35	2	4	57	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11304071--11304116	21	2.1	22	88	4	67	17	10	2	69	1.27
11308010--11308052	11	3.8	11	80	17	52	30	2	2	65	1.18
11308013--11308056	23	1.9	23	90	0	70	31	2	4	61	1.28
11315084--11315127	24	1.9	24	86	9	65	52	0	0	47	1.00
11315797--11315841	23	2.0	23	86	0	63	31	13	20	35	1.91
11326920--11327094	58	3.0	59	83	7	232	30	16	14	38	1.89
11327107--11327225	60	2.0	59	82	8	143	29	15	13	41	1.86
11328018--11328066	20	2.5	20	75	25	50	59	2	4	34	1.28
11331092--11331126	17	2.1	16	89	5	52	54	0	8	37	1.31
11331359--11331433	37	2.0	37	97	0	141	40	12	5	42	1.65
11331396--11331706	94	3.3	94	90	1	489	43	8	5	43	1.56
11331778--11331822	22	2.0	22	91	0	72	35	46	4	13	1.63
11332360--11332385	7	3.7	7	100	0	52	0	26	0	73	0.84
11335532--11335575	19	2.4	18	84	3	52	20	6	4	68	1.31
11335441--11335587	77	1.9	77	82	8	183	28	5	4	61	1.36
11336783--11336843	17	3.9	17	69	30	55	26	3	6	63	1.34
11336765--11336909	29	4.9	30	92	3	213	26	6	4	62	1.37
11336782--11336879	17	5.2	17	72	22	54	28	5	4	62	1.35
11337773--11338170	116	3.5	115	77	9	352	36	17	17	29	1.92
11337744--11338170	58	7.4	59	74	15	290	36	17	17	28	1.93
11337803--11338034	119	1.9	119	83	5	299	38	18	15	27	1.91
11337863--11338182	53	5.7	53	72	15	166	35	18	17	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11343983--11344021	19	2.0	19	90	5	60	20	2	30	46	1.64
11347775--11347807	17	2.0	17	88	5	50	39	9	6	45	1.61
11348835--11348935	44	2.3	43	83	6	123	40	4	2	51	1.39
11353327--11353383	27	2.1	27	90	0	87	15	28	19	36	1.92
11353520--11353650	44	3.0	44	81	3	147	22	20	11	45	1.83
11354847--11355288	45	9.9	45	81	1	496	37	13	21	26	1.91
11354847--11355288	89	5.0	89	88	4	455	37	13	21	26	1.91
11354846--11355216	134	2.8	134	91	0	564	37	15	21	25	1.92
11354847--11355288	134	3.3	134	86	2	541	37	13	21	26	1.91
11357541--11357800	90	2.9	90	79	3	265	30	23	13	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193