genome.fa.s4.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  165  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51354229--51354304	31	2.4	32	82	6	84	27	18	5	48	1.69
51357870--51357932	29	2.3	27	78	13	65	47	0	4	47	1.23
51358367--51358411	22	2.0	22	87	8	65	28	0	4	66	1.11
51363049--51363099	13	3.7	13	77	12	57	60	1	0	37	1.08
51363049--51363097	14	3.5	14	75	10	55	61	2	0	36	1.08
51363054--51363111	15	3.9	14	76	15	55	60	1	1	36	1.17
51369809--51369851	20	2.3	19	80	19	54	30	2	0	67	1.03
51370400--51370429	15	1.9	16	93	6	53	83	0	16	0	0.65
51374917--51374986	24	2.9	23	74	22	63	44	2	0	52	1.15
51386902--51386951	17	2.9	17	78	0	55	62	2	2	34	1.18
51392073--51392144	32	2.2	31	81	13	83	51	1	6	40	1.37
51393743--51393794	27	1.9	27	100	0	104	21	21	7	50	1.73
51397838--51397898	21	2.9	21	76	11	61	37	3	0	59	1.14
51400027--51400052	4	6.5	4	100	0	52	26	73	0	0	0.84
51406039--51406100	29	2.1	30	84	6	81	32	9	14	43	1.78
51413286--51413347	24	2.6	24	87	2	81	61	0	1	37	1.06
51427289--51427319	2	15.5	2	100	0	62	48	0	0	51	1.00
51428221--51428250	14	2.1	14	100	0	60	50	13	13	23	1.77
51437064--51437105	21	2.0	21	100	0	84	71	0	0	28	0.86
51437109--51437154	16	3.1	15	84	9	58	56	0	4	39	1.19
51437109--51437148	16	2.5	16	87	0	62	55	0	5	40	1.22
51437167--51437210	21	2.1	21	100	0	88	52	9	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51437167--51437202	12	3.2	12	77	22	51	52	11	0	36	1.37
51442381--51443144	59	12.9	58	82	8	753	34	2	29	34	1.70
51442394--51443155	29	25.9	29	66	20	214	34	2	29	34	1.70
51444845--51444879	18	1.9	18	94	0	61	20	8	14	57	1.63
51445635--51445695	17	3.5	17	73	4	68	57	4	3	34	1.36
51445635--51445701	35	1.9	35	93	0	116	56	7	2	32	1.42
51449955--51450017	31	2.0	31	96	0	117	52	7	3	36	1.47
51452286--51452361	38	2.0	39	85	10	104	42	10	3	43	1.57
51455726--51455764	19	1.9	19	85	10	51	64	2	2	30	1.21
51459246--51459290	23	2.0	23	82	8	56	64	0	6	28	1.19
51460029--51460087	26	2.3	25	82	5	73	40	3	0	55	1.16
51468185--51468499	69	4.6	69	95	1	553	23	25	13	36	1.92
51473613--51473648	18	2.0	18	88	0	54	11	27	22	38	1.88
51475778--51475811	16	2.1	16	88	0	50	70	14	2	11	1.27
51483528--51483580	26	2.0	26	96	0	97	30	28	15	26	1.96
51503083--51503116	6	5.5	6	96	3	59	47	32	0	20	1.51
51524106--51524133	14	2.0	14	100	0	56	50	7	14	28	1.69
51536986--51537048	32	2.0	32	87	0	90	7	15	14	61	1.54
51557557--51557599	22	2.0	22	95	0	77	48	16	11	23	1.78
51562467--51562506	17	2.4	17	84	12	55	62	2	5	30	1.29
51571785--51571908	66	1.9	66	89	0	194	41	15	26	16	1.87
51574634--51574666	14	2.4	14	90	5	50	36	6	0	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51586961--51587126	24	6.9	24	88	0	233	28	25	21	24	1.99
51587120--51587236	53	2.2	53	93	3	200	35	22	17	23	1.95
51587120--51587236	26	4.4	26	92	3	198	35	22	17	23	1.95
51597461--51597513	20	2.6	20	76	8	54	11	11	11	66	1.46
51604612--51604650	18	2.2	18	86	4	53	35	2	2	58	1.25
51606367--51606396	2	15.0	2	100	0	60	50	0	0	50	1.00
51612541--51612687	76	1.9	75	83	1	186	26	18	14	40	1.90
51618672--51618748	29	2.6	30	95	4	138	55	24	0	19	1.43
51620210--51620259	23	2.2	23	88	0	73	28	10	6	56	1.56
51630071--51630174	48	2.2	48	81	10	115	37	18	18	25	1.93
51632997--51633030	17	2.1	16	88	5	50	70	2	0	26	1.01
51632998--51633041	11	3.9	11	87	3	61	70	4	0	25	1.06
51633004--51633033	14	2.1	14	93	0	51	70	0	0	30	0.88
51638436--51638477	20	2.2	19	83	8	50	28	9	16	45	1.79
51657648--51657696	22	2.2	22	85	0	62	42	6	16	34	1.73
51663712--51663776	29	2.3	26	77	12	67	58	7	1	32	1.36
51667861--51667989	40	3.2	40	90	5	179	17	18	37	26	1.92
51668649--51668727	29	2.7	29	90	3	115	22	17	18	40	1.91
51668708--51668790	29	2.9	29	81	0	94	24	14	21	39	1.91
51671040--51671069	2	15.0	2	100	0	60	50	0	0	50	1.00
51681835--51681914	39	2.0	40	90	2	126	55	3	6	35	1.43
51682383--51682422	3	13.3	3	100	0	80	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51682847--51682888	8	5.2	8	77	11	50	33	0	2	64	1.07
51687482--51687521	20	2.0	21	90	5	64	85	0	2	12	0.71
51687488--51687517	16	1.9	15	93	6	51	90	0	0	10	0.47
51691571--51691637	24	2.7	23	74	19	55	44	1	2	50	1.26
51696280--51696334	28	2.1	25	83	12	67	78	0	9	12	0.97
51707065--51707173	57	1.9	57	82	0	137	38	7	7	46	1.60
51707734--51707788	17	3.3	17	75	10	51	60	0	1	38	1.08
51707745--51707796	16	3.2	15	76	12	50	51	0	5	42	1.25
51716650--51716694	20	2.2	20	84	0	54	57	2	4	35	1.31
51717079--51717120	16	2.4	17	80	15	50	47	4	0	47	1.23
51720134--51720181	13	3.7	13	81	13	55	45	2	10	41	1.50
51720134--51720184	26	1.9	27	88	4	77	45	1	9	43	1.48
51720135--51720192	27	2.2	26	81	9	64	43	1	12	43	1.52
51722084--51722180	29	3.3	29	94	0	149	26	9	11	52	1.67
51722224--51722264	18	2.2	19	83	12	50	53	0	0	46	1.00
51740809--51740846	18	2.2	18	90	4	60	65	0	0	34	0.93
51746627--51746661	15	2.2	16	90	5	54	60	8	11	20	1.57
51756533--51756574	2	22.0	2	85	9	52	54	2	0	42	1.13
51756526--51756567	20	2.1	20	95	0	75	59	2	0	38	1.10
51762444--51762468	13	1.9	13	100	0	50	72	0	24	4	1.02
51771075--51771158	42	2.0	42	88	0	123	47	17	1	33	1.56
51774909--51774943	6	5.8	6	93	0	61	54	0	31	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51778085--51778245	29	5.5	28	71	14	112	36	3	27	31	1.75
51778056--51778391	59	5.7	59	87	4	457	35	3	29	31	1.76
51778110--51778265	30	5.3	30	70	8	124	32	3	32	31	1.76
51778423--51778602	30	6.0	30	92	0	297	34	2	25	37	1.71
51778423--51778626	90	2.3	90	90	3	304	34	3	25	36	1.74
51779403--51779445	19	2.3	18	84	15	52	13	6	0	79	0.93
51780440--51780510	11	6.5	11	72	15	58	56	0	4	39	1.19
51780438--51780508	31	2.4	29	88	4	97	56	0	4	39	1.19
51789236--51789513	29	9.5	29	68	12	165	35	4	29	30	1.78
51789205--51789536	29	11.3	30	66	18	121	35	4	29	30	1.77
51789206--51789541	59	5.7	58	86	5	460	35	4	29	30	1.77
51789546--51789801	89	2.9	89	88	3	356	34	3	25	36	1.73
51789546--51789801	30	8.6	30	88	3	349	34	3	25	36	1.73
51790614--51790656	19	2.3	18	84	15	52	13	6	0	79	0.93
51791561--51791631	30	2.3	31	95	2	126	14	16	21	47	1.81
51791683--51791753	11	6.5	11	72	15	58	56	0	4	39	1.19
51791681--51791751	31	2.4	29	88	4	97	56	0	4	39	1.19
51792704--51792778	31	2.4	31	93	0	123	42	12	26	18	1.85
51792885--51792924	18	2.3	18	86	4	55	52	10	2	35	1.48
51793544--51793610	22	3.1	22	72	16	59	47	4	2	44	1.38
51795025--51795059	18	1.9	18	94	0	61	57	14	8	20	1.63
51796450--51796491	22	2.0	22	95	4	77	40	0	4	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51797364--51797420	29	2.0	29	85	0	78	40	19	7	33	1.78
51797410--51797723	59	5.4	59	85	3	411	35	27	1	36	1.65
51797410--51797723	117	2.7	118	85	4	440	35	27	1	36	1.65
51797404--51797690	29	9.8	29	64	18	89	35	26	1	36	1.64
51809064--51809191	47	2.7	46	88	5	177	47	16	21	14	1.82
51810005--51810989	200	4.9	200	89	2	1476	36	20	22	19	1.95
51811463--51811497	18	1.9	18	100	0	70	57	17	8	17	1.64
51812227--51812269	22	2.0	22	86	4	61	34	2	6	55	1.39
51812997--51813094	29	3.3	29	77	9	92	37	23	2	36	1.67
51813046--51813254	29	7.2	29	71	17	166	34	23	1	40	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193