genome.fa.s4.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  164  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50953284--50953599	117	2.7	116	89	4	465	32	31	4	31	1.77
50965438--50965491	20	3.1	16	73	21	54	35	0	0	64	0.94
50965447--50965492	20	2.2	20	85	11	58	34	0	0	65	0.93
50973266--50973324	24	2.3	25	82	8	66	18	6	0	74	1.03
50973299--50973337	11	3.5	11	82	6	51	23	2	0	74	0.94
50973298--50973335	17	2.2	17	90	0	58	21	2	0	76	0.91
50973470--50973505	18	2.0	18	88	0	54	52	5	0	41	1.24
50979780--50979820	20	2.1	19	86	4	55	19	2	2	75	1.03
50980440--50980497	30	1.9	31	82	3	73	41	5	13	39	1.67
50993878--50993954	39	2.0	39	86	0	109	33	19	6	40	1.77
50994537--50994609	29	2.4	31	90	4	114	46	1	0	52	1.09
50995594--50995639	21	2.2	21	84	7	58	58	0	6	34	1.24
51003315--51003656	179	1.9	178	80	3	400	38	25	12	23	1.91
51003526--51003854	165	2.0	160	83	6	412	37	22	14	25	1.92
51004791--51004829	2	19.5	2	100	0	78	51	0	48	0	1.00
51005608--51005673	29	2.3	29	89	0	96	43	19	9	27	1.81
51012609--51012651	21	2.0	23	82	17	56	53	2	9	34	1.46
51014033--51014102	30	2.4	30	85	2	88	35	5	10	48	1.60
51015000--51015025	13	2.0	13	100	0	52	30	0	30	38	1.58
51016607--51016669	30	2.1	31	87	3	92	41	3	4	50	1.39
51025872--51025901	6	5.0	6	100	0	60	33	0	0	66	0.92
51025903--51025944	18	2.4	17	88	11	66	26	4	0	69	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51029596--51029639	21	2.1	21	87	8	63	22	0	18	59	1.38
51031350--51031392	23	2.0	23	86	9	63	44	2	4	48	1.36
51047931--51047970	17	2.4	17	86	0	53	35	20	22	22	1.96
51052325--51052385	3	20.3	3	100	0	122	32	0	0	67	0.91
51054308--51054349	20	2.2	19	83	12	50	14	14	16	54	1.71
51057896--51058040	71	2.0	71	100	0	290	31	10	16	41	1.82
51059493--51059750	48	5.3	48	87	4	367	44	5	0	49	1.30
51059493--51059752	97	2.7	95	88	7	389	43	5	0	50	1.30
51059692--51059797	18	5.3	21	72	17	84	49	0	1	48	1.18
51059817--51059846	4	7.5	4	100	0	60	46	0	0	53	1.00
51059771--51059872	46	2.2	48	78	3	109	45	0	6	48	1.29
51059891--51059942	8	6.5	8	81	0	59	57	0	0	42	0.98
51059893--51059959	12	5.1	12	81	18	80	50	0	1	47	1.10
51059735--51060053	163	2.0	159	88	3	480	42	0	8	47	1.39
51060253--51060333	40	2.0	40	100	0	162	61	12	2	23	1.42
51061765--51062023	41	6.3	40	81	9	220	17	27	21	33	1.95
51061765--51062023	83	3.2	83	75	10	214	17	27	21	33	1.95
51061949--51062025	40	1.9	40	97	0	145	15	24	25	33	1.95
51068986--51069032	21	2.1	23	84	7	62	19	4	4	72	1.18
51074559--51074700	51	2.7	51	89	2	194	38	16	7	38	1.76
51075413--51075879	233	2.0	234	84	2	607	44	11	6	36	1.67
51080910--51080952	21	2.0	21	100	0	86	23	13	9	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51081087--51081132	23	2.0	24	83	12	60	52	13	8	26	1.69
51084428--51084722	153	1.9	153	88	1	448	32	16	15	34	1.91
51086270--51086315	23	2.0	24	87	8	69	60	0	0	39	0.97
51086513--51086547	16	2.2	16	89	0	52	68	2	2	25	1.17
51090613--51090972	179	2.0	179	88	1	533	35	21	12	30	1.90
51090609--51090972	93	4.0	93	82	6	474	35	21	12	30	1.90
51093925--51093962	15	2.5	15	91	0	58	76	2	2	18	1.02
51101127--51101176	21	2.5	20	84	12	68	66	8	0	26	1.19
51102435--51102655	111	2.0	112	86	1	309	26	9	18	45	1.79
51102538--51102843	159	1.9	160	94	2	544	25	6	20	47	1.74
51126153--51126234	41	2.0	41	90	0	128	23	6	25	45	1.76
51127611--51127644	6	5.8	6	89	3	52	0	0	61	38	0.96
51132933--51132959	14	1.9	14	100	0	54	77	7	14	0	0.97
51133145--51133174	8	3.8	8	90	0	51	43	0	6	50	1.28
51141300--51141346	23	2.0	23	83	4	58	44	6	0	48	1.28
51153256--51153756	171	2.9	169	91	3	767	34	6	20	38	1.80
51155263--51155332	31	2.3	31	80	5	79	34	10	11	44	1.74
51157238--51157272	18	2.0	18	88	5	54	54	2	0	42	1.15
51163802--51163842	21	2.0	20	86	13	57	53	2	2	41	1.27
51172890--51172956	29	2.2	29	79	10	73	26	14	5	52	1.65
51173140--51173188	15	3.2	15	80	5	53	55	0	0	44	0.99
51173152--51173186	15	2.3	15	90	0	61	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51179739--51179783	22	2.1	21	87	4	63	64	2	0	33	1.06
51191484--51191519	18	2.0	18	88	0	54	50	5	8	36	1.56
51197971--51198039	33	2.1	32	84	7	86	20	17	24	37	1.93
51199320--51199377	15	3.9	15	76	8	57	34	0	0	65	0.93
51201914--51202012	20	4.9	20	75	16	89	55	4	1	39	1.25
51201987--51202050	22	3.0	21	73	13	67	62	0	1	35	1.05
51201966--51202050	45	2.0	43	81	11	102	61	1	1	36	1.12
51203973--51204018	23	2.0	23	83	8	58	45	10	0	43	1.39
51212549--51212591	17	2.6	16	81	7	50	44	6	2	46	1.43
51214270--51214311	16	2.5	17	81	14	52	57	0	2	40	1.12
51216859--51216899	2	20.5	2	100	0	82	0	48	0	51	1.00
51220785--51220825	2	20.5	2	89	0	64	46	0	0	53	1.00
51227595--51227638	22	2.0	22	90	0	70	61	11	2	25	1.41
51231805--51231849	22	2.0	22	95	0	81	48	22	2	26	1.62
51234055--51234098	19	2.3	19	100	0	88	43	11	9	36	1.72
51239908--51239941	18	1.9	18	88	5	52	29	0	5	64	1.17
51241752--51241801	13	3.8	13	79	10	57	42	6	16	36	1.72
51241739--51241802	26	2.5	26	78	0	74	37	9	18	34	1.83
51242232--51242264	15	2.2	15	94	0	57	54	6	9	30	1.56
51244766--51244807	18	2.5	16	88	7	57	28	23	0	47	1.52
51261654--51262178	275	1.9	275	85	4	718	35	12	15	36	1.86
51263877--51263936	26	2.2	28	80	11	72	65	1	0	33	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51265027--51265059	14	2.4	14	85	5	50	57	0	0	42	0.98
51265215--51265258	4	11.0	4	95	0	52	40	25	9	25	1.84
51271193--51271959	104	7.3	104	71	9	507	40	16	13	29	1.87
51271036--51271894	108	8.1	107	71	11	577	40	16	13	29	1.87
51271083--51271959	212	4.1	212	91	1	1224	40	16	12	29	1.86
51273943--51273984	18	2.3	18	80	8	50	73	4	0	21	1.01
51279469--51279508	19	2.2	19	86	4	55	55	0	0	45	0.99
51279517--51279579	21	3.0	20	81	9	65	49	4	0	46	1.23
51281358--51281390	17	1.9	17	93	0	57	54	0	6	39	1.25
51293013--51293060	20	2.4	21	79	6	55	27	2	8	62	1.35
51299104--51299256	54	2.8	54	84	5	168	28	18	25	28	1.98
51299107--51299285	54	3.3	54	78	6	166	29	18	25	26	1.98
51302725--51302788	25	2.6	25	92	0	110	12	25	18	43	1.85
51304192--51304383	12	16.8	11	66	24	64	42	1	3	53	1.23
51304193--51304302	20	5.9	18	71	19	66	40	0	3	54	1.24
51304201--51304379	68	2.6	66	75	17	152	41	1	3	53	1.24
51304323--51304380	22	2.6	22	82	12	66	44	0	1	53	1.10
51304341--51304384	17	2.6	18	78	10	56	50	0	0	50	1.00
51307158--51307475	157	2.0	158	84	4	419	36	21	13	28	1.91
51309222--51309268	24	2.0	23	95	4	85	48	0	4	46	1.21
51313467--51313532	31	2.1	31	85	0	87	34	24	18	22	1.96
51316432--51316483	16	3.2	16	77	17	54	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51326735--51327090	189	1.9	187	81	3	437	32	8	18	40	1.81
51326628--51327191	188	3.0	195	77	9	529	31	8	17	42	1.80
51336033--51336066	16	2.2	16	89	5	52	20	0	0	79	0.73
51339556--51339591	18	2.0	18	94	0	63	36	0	0	63	0.94
51343357--51343454	30	3.3	30	73	18	87	27	11	13	47	1.76
51343357--51343512	60	2.6	58	80	5	143	25	14	14	46	1.82
51343660--51343847	60	3.2	57	81	8	200	49	11	13	25	1.75
51343677--51343847	57	2.9	57	80	10	184	50	10	12	25	1.72
51349710--51349744	17	2.1	17	88	0	52	17	8	25	48	1.75
51351947--51351997	3	17.0	3	92	8	86	31	1	0	66	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193