genome.fa.s4.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  115  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36666811--36666848	10	3.9	10	82	3	51	63	0	36	0	0.95
36671615--36671690	38	2.0	38	97	0	143	21	35	5	38	1.76
36676037--36676118	40	2.0	41	92	2	139	34	10	23	31	1.89
36678453--36678533	2	43.0	2	83	11	109	50	2	0	46	1.14
36678449--36678533	17	5.1	17	92	4	129	50	3	0	45	1.18
36680749--36680780	15	2.1	15	100	0	64	40	28	25	6	1.79
36685031--36685311	50	5.5	50	67	15	164	24	16	19	38	1.92
36685015--36685406	101	3.9	101	90	1	543	25	17	19	38	1.93
36685031--36685406	203	1.9	202	86	2	549	25	17	19	38	1.93
36685017--36685462	203	2.2	202	82	2	547	24	18	19	37	1.94
36685525--36685624	50	2.0	50	84	3	130	22	20	20	38	1.94
36686631--36686749	49	2.4	49	94	2	202	7	26	19	47	1.76
36686666--36686763	49	2.1	46	83	9	119	10	22	18	48	1.77
36687164--36687349	93	2.0	92	96	1	345	34	16	20	27	1.94
36695100--36695461	30	12.2	29	76	9	309	35	1	27	35	1.66
36695100--36695462	59	6.1	60	79	8	323	35	1	26	35	1.66
36696666--36696729	32	2.0	32	93	6	112	43	9	14	32	1.77
36698541--36698898	193	1.8	195	86	2	515	30	17	25	27	1.97
36707958--36708003	15	3.5	15	67	32	50	56	10	4	28	1.53
36709734--36709905	90	1.9	90	83	8	224	25	12	11	51	1.73
36710280--36710424	58	2.5	58	82	2	175	53	14	10	21	1.70
36711545--36711609	31	2.1	31	88	5	96	43	10	15	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36712741--36712774	15	2.3	15	89	0	50	58	0	0	41	0.98
36713198--36713242	3	15.3	3	95	4	83	68	0	0	31	0.89
36716600--36717000	43	9.1	43	73	8	270	29	25	15	28	1.96
36718507--36718579	35	2.1	35	100	0	146	36	15	16	31	1.90
36720601--36720669	25	2.8	24	70	12	68	27	11	7	53	1.63
36721326--36721369	18	2.4	19	84	3	63	47	2	4	45	1.35
36728971--36729412	41	10.8	41	77	8	393	22	24	17	35	1.96
36728971--36729412	82	5.4	82	79	6	454	22	24	17	35	1.96
36728971--36729414	123	3.6	123	80	8	462	22	24	18	34	1.96
36729402--36729538	40	3.4	40	80	7	118	18	21	20	38	1.93
36729425--36729538	40	2.8	39	83	7	122	20	21	21	37	1.94
36731703--36731799	51	1.9	51	89	0	149	30	24	11	32	1.91
36731835--36732032	33	6.0	33	72	12	131	21	45	2	30	1.63
36731844--36732032	66	2.9	66	79	9	206	22	46	2	29	1.64
36731844--36732054	99	2.1	99	80	3	228	23	45	1	29	1.63
36731928--36732054	33	3.8	32	82	6	155	22	48	0	28	1.56
36732929--36732987	16	3.6	16	82	15	68	28	1	22	47	1.61
36737637--36737719	44	1.9	44	95	2	150	36	31	24	8	1.85
36747967--36748135	85	2.0	86	92	1	286	28	21	21	27	1.99
36748664--36748717	27	2.0	28	89	7	85	44	9	16	29	1.79
36750366--36750402	2	18.5	2	89	10	58	51	2	0	45	1.15
36752944--36752981	2	19.5	2	94	5	69	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36755025--36755049	5	5.0	5	100	0	50	40	0	0	60	0.97
36761550--36761584	19	1.9	19	88	11	56	65	5	2	25	1.28
36764976--36765182	66	3.1	66	97	0	378	24	27	21	26	1.99
36777774--36777823	3	16.7	3	95	0	91	70	0	30	0	0.88
36778019--36778725	367	1.9	361	85	3	930	33	13	21	31	1.92
36783646--36783772	39	3.3	39	72	4	121	22	18	33	25	1.97
36783540--36783817	78	3.6	76	82	4	324	25	19	30	24	1.98
36784113--36784225	49	2.3	49	87	3	156	12	30	21	35	1.90
36784357--36784807	246	1.9	241	86	5	647	13	30	17	38	1.88
36784666--36785424	99	7.6	99	77	6	482	16	32	16	34	1.91
36784647--36785424	198	3.9	199	81	4	789	16	32	16	35	1.91
36784647--36785416	303	2.6	296	78	7	755	16	32	16	34	1.91
36784388--36785502	49	22.5	50	72	7	583	15	31	17	35	1.91
36786410--36786457	6	7.5	6	84	11	51	4	12	0	83	0.79
36786410--36786466	14	4.3	13	80	10	71	3	14	0	82	0.80
36786410--36786482	33	2.2	34	90	7	123	6	12	0	80	0.89
36786416--36786482	27	2.5	27	85	7	84	7	11	0	80	0.90
36795298--36795334	18	2.0	19	89	5	58	40	0	5	54	1.24
36795653--36795679	14	1.9	14	100	0	54	25	0	0	74	0.83
36795654--36795700	18	2.6	18	76	6	51	25	0	0	74	0.82
36796657--36796721	30	2.2	30	91	0	103	58	13	4	23	1.54
36798443--36798668	59	3.9	59	84	1	276	35	5	28	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36798546--36798639	29	3.2	28	70	19	84	35	2	26	36	1.69
36798500--36798668	30	5.7	30	69	14	109	34	5	28	31	1.80
36798444--36798698	118	2.2	117	84	3	325	35	4	28	31	1.78
36798650--36798869	30	7.4	30	92	1	343	34	4	25	35	1.75
36798503--36798869	59	6.2	60	85	5	264	34	4	26	33	1.77
36799172--36799235	29	2.1	32	82	8	80	54	12	18	14	1.70
36800673--36800758	6	14.0	6	71	18	52	46	2	1	50	1.21
36800701--36800766	25	2.8	23	77	11	71	56	3	1	39	1.24
36800701--36800768	17	4.2	16	75	19	61	55	2	1	39	1.24
36801174--36801955	69	11.4	69	92	3	1256	29	19	16	33	1.94
36813603--36813727	58	2.2	58	83	2	153	40	5	27	27	1.78
36813719--36813857	30	4.6	30	85	1	188	34	4	25	35	1.76
36813681--36813849	91	1.9	90	79	9	191	36	5	24	33	1.78
36813719--36813857	61	2.3	60	89	1	206	34	4	25	35	1.76
36815019--36815055	2	19.0	2	94	5	67	48	0	0	51	1.00
36815670--36815761	6	15.8	6	74	17	70	50	2	1	46	1.20
36815670--36815760	42	2.2	40	83	7	112	49	2	1	47	1.21
36817773--36817859	30	2.9	30	86	6	122	56	8	5	29	1.52
36823564--36823607	3	15.0	3	90	4	72	65	2	0	31	1.05
36824164--36824192	11	2.5	12	94	5	51	37	6	0	55	1.27
36835045--36835118	24	3.1	24	92	1	123	31	12	1	55	1.45
36842330--36842370	21	2.1	19	86	9	55	29	0	21	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36851751--36851813	24	2.6	24	89	0	99	22	22	19	36	1.95
36857004--36857097	43	2.2	43	86	0	134	24	27	32	14	1.95
36865325--36865411	21	4.1	21	67	8	52	34	21	12	31	1.91
36866064--36866333	42	6.4	42	85	5	323	26	25	10	37	1.87
36875471--36875521	18	3.0	17	80	8	50	60	7	11	19	1.55
36883699--36883723	13	1.9	13	100	0	50	56	0	8	36	1.29
36887420--36887683	42	6.3	42	82	6	311	26	26	10	36	1.88
36893842--36893995	42	3.6	42	78	4	148	33	13	25	26	1.93
36893896--36894007	42	2.7	42	83	6	138	37	13	22	26	1.91
36898580--36898647	29	2.3	31	82	7	86	41	22	5	30	1.77
36898605--36898779	30	5.9	29	82	8	194	31	21	6	40	1.80
36898605--36898765	59	2.7	58	85	8	218	32	21	6	38	1.80
36898605--36898775	89	1.9	89	87	7	249	31	20	7	40	1.79
36907288--36907955	50	13.5	50	71	8	454	33	16	30	19	1.94
36907229--36907936	99	7.2	99	82	3	793	33	15	30	19	1.94
36907229--36907933	296	2.4	295	85	3	934	33	15	30	20	1.94
36907386--36907884	148	3.4	147	74	8	476	33	16	31	19	1.93
36907294--36907933	297	2.2	296	86	2	901	33	15	31	20	1.94
36908234--36908331	36	2.7	37	79	13	116	28	29	16	25	1.97
36910171--36910319	30	5.0	30	88	2	194	29	24	9	36	1.87
36910631--36910661	16	1.9	16	100	0	62	12	0	0	87	0.55
36915484--36915518	16	2.2	16	90	10	54	0	65	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36917738--36917785	20	2.5	18	78	15	51	50	0	0	50	1.00
36917745--36917785	20	2.0	21	90	4	66	46	0	0	53	1.00
36917743--36917806	28	2.3	28	84	13	87	50	0	1	48	1.10
36918725--36918757	11	3.2	11	83	16	52	51	0	0	48	1.00
36918725--36918763	20	2.0	20	89	0	60	46	2	2	48	1.29
36919058--36919091	15	2.2	16	94	5	61	41	0	5	52	1.25
36922184--36922253	31	2.3	30	85	4	88	38	5	11	44	1.64
36949294--36949318	11	2.3	11	100	0	50	24	0	16	60	1.36
36953596--36953640	6	7.5	6	100	0	90	33	0	66	0	0.92
36954507--36954549	18	2.4	18	92	7	70	51	0	4	44	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193