genome.fa.s4.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  147  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45826870--45826943	29	2.5	29	80	4	76	50	14	14	20	1.78
45839884--45839909	5	5.2	5	100	0	52	0	38	0	61	0.96
45842016--45842072	2	28.5	2	100	0	114	49	0	0	50	1.00
45850908--45850965	11	5.0	12	72	16	50	75	0	15	8	1.02
45850907--45850962	24	2.5	20	83	16	67	76	0	16	7	0.99
45851595--45851668	30	2.5	30	87	8	107	55	5	0	39	1.23
45851615--45851666	25	2.1	25	81	0	59	55	5	0	38	1.24
45851621--45851675	15	3.6	15	72	20	51	56	5	0	38	1.23
45856567--45856614	18	2.8	17	78	6	51	39	22	12	25	1.89
45860151--45860194	22	1.9	24	86	9	65	43	0	11	45	1.40
45862388--45862431	14	2.8	16	80	16	56	47	0	0	52	1.00
45869580--45869630	17	3.1	16	83	8	57	39	1	5	52	1.37
45869599--45869635	17	2.2	17	95	0	65	37	2	5	54	1.38
45871079--45871235	30	5.2	30	84	6	210	38	22	4	35	1.74
45871083--45871235	60	2.5	60	93	1	261	38	22	4	34	1.75
45891825--45891894	26	2.7	26	93	0	113	24	17	32	25	1.96
45894957--45895032	38	2.0	38	100	0	152	44	15	13	26	1.83
45900834--45901055	117	1.9	117	96	0	408	34	9	18	37	1.83
45900860--45901042	60	3.1	60	61	21	132	34	10	16	38	1.83
45907548--45907615	24	2.9	23	82	8	66	38	0	8	52	1.33
45907598--45907669	30	2.4	29	82	11	83	43	2	4	50	1.36
45907905--45907937	16	2.1	16	88	5	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45908277--45908384	56	1.9	57	85	9	150	47	10	4	37	1.58
45908735--45908829	9	10.7	9	72	15	72	68	3	1	27	1.11
45908896--45908945	19	2.6	19	81	12	59	56	0	12	32	1.36
45908890--45908945	19	2.9	19	79	15	53	57	0	10	32	1.33
45909851--45909917	23	2.9	22	80	8	62	59	2	2	34	1.28
45909975--45910015	13	3.2	13	82	0	55	68	0	2	29	1.03
45911132--45911263	55	2.4	55	88	0	192	47	9	7	35	1.64
45914880--45914911	3	10.7	3	93	0	55	34	3	0	62	1.11
45920701--45920776	37	2.1	37	97	0	143	26	3	22	47	1.68
45922991--45923025	2	17.0	2	94	5	61	48	0	2	48	1.16
45928237--45928274	2	19.0	2	94	0	67	47	0	2	50	1.15
45937386--45937428	18	2.4	18	88	7	61	46	0	0	53	1.00
45938114--45938176	21	3.1	21	67	17	53	47	4	0	47	1.23
45948890--45949314	222	1.9	222	94	0	751	32	15	20	31	1.94
45959187--45959735	275	2.0	275	98	0	1055	26	21	16	34	1.95
45960689--45960728	21	2.0	20	85	5	53	40	2	42	15	1.60
45962521--45962553	16	2.1	16	88	11	50	48	9	6	36	1.60
45969548--45969605	2	29.0	2	100	0	116	0	50	0	50	1.00
45974717--45974840	59	2.1	59	86	0	167	37	16	8	38	1.78
45976555--45976596	20	2.1	20	95	0	75	14	11	9	64	1.50
45982132--45982185	27	2.0	27	100	0	108	44	7	33	14	1.73
45984767--45984883	60	1.9	61	84	5	157	57	7	5	29	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45991314--45991355	17	2.4	18	84	11	61	38	0	7	54	1.28
45991326--45991389	17	3.8	17	71	17	53	46	3	3	46	1.34
45992159--45992204	16	2.8	16	83	9	58	54	0	2	43	1.12
45993361--45993482	58	2.1	58	89	1	181	32	25	4	37	1.75
45993361--45993549	59	3.2	59	81	4	186	33	24	3	38	1.72
45993455--45993692	59	4.1	58	84	6	268	32	26	1	38	1.67
45993339--45993657	29	10.9	30	68	18	142	33	25	2	37	1.71
45994911--45995327	157	2.6	157	91	1	674	35	16	8	40	1.78
45995408--45995483	30	2.6	30	91	4	120	50	1	0	48	1.09
45995444--45995486	21	2.0	23	90	9	72	53	0	0	46	1.00
45996370--45996420	22	2.4	21	87	6	75	19	17	11	50	1.76
46004038--46004079	21	2.0	21	95	0	75	42	21	0	35	1.53
46011908--46011972	28	2.4	28	84	2	78	38	23	20	18	1.93
46012317--46012356	18	2.2	18	90	0	62	15	25	27	32	1.95
46015963--46016010	23	2.2	22	88	7	71	18	4	10	66	1.37
46029923--46029992	17	4.1	17	77	3	77	44	1	1	52	1.18
46031723--46031801	29	2.7	30	74	16	76	36	29	1	32	1.66
46031732--46031803	29	2.5	27	84	11	81	34	31	1	31	1.67
46031732--46031803	30	2.4	29	84	11	94	34	31	1	31	1.67
46034793--46034826	17	2.0	17	94	0	59	32	23	8	35	1.86
46048657--46048681	2	12.5	2	100	0	50	52	0	0	48	1.00
46049746--46049807	28	2.1	30	82	14	76	61	3	0	35	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46050825--46050863	19	2.1	19	85	9	53	46	0	0	53	1.00
46051545--46051575	6	5.2	6	92	0	53	12	0	51	35	1.40
46056107--46056154	16	2.9	17	71	6	53	68	0	2	29	1.01
46056428--46056455	14	2.0	14	100	0	56	35	7	28	28	1.84
46062461--46062539	30	2.7	29	84	9	99	32	6	18	41	1.76
46062471--46062633	90	1.8	89	81	4	202	34	3	21	41	1.69
46062585--46062648	29	2.2	29	83	5	76	42	4	18	34	1.71
46064350--46064795	79	5.6	79	84	2	520	25	16	24	33	1.96
46064350--46064795	237	1.9	237	85	2	619	25	16	24	33	1.96
46065356--46065574	112	2.0	112	87	1	323	38	12	21	27	1.89
46065884--46065952	16	4.4	16	75	10	54	4	14	0	81	0.84
46065876--46065940	22	3.0	21	80	8	69	4	16	0	78	0.91
46065882--46065952	15	4.6	15	72	19	58	5	14	0	80	0.89
46067843--46067916	23	3.3	22	84	3	94	35	29	22	12	1.91
46067911--46067957	23	2.0	23	91	0	76	42	21	25	10	1.85
46072000--46072056	26	2.2	26	93	0	96	10	8	35	45	1.70
46072008--46072059	26	2.0	26	100	0	104	11	7	34	46	1.69
46085362--46085390	3	9.7	3	100	0	58	31	0	34	34	1.58
46091450--46091516	32	2.1	31	83	8	82	74	8	7	8	1.22
46093242--46093277	18	2.0	18	88	0	54	58	0	5	36	1.22
46093593--46093694	34	3.0	34	98	0	195	41	7	17	33	1.79
46093899--46093931	14	2.4	14	94	0	57	42	0	3	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46096155--46096188	16	2.1	16	88	0	50	70	0	0	29	0.87
46107221--46107271	12	4.2	12	78	9	59	54	7	35	1	1.40
46109074--46109123	26	2.0	25	92	4	82	42	4	4	50	1.40
46110841--46110869	14	2.1	14	100	0	58	37	13	13	34	1.85
46117514--46117549	18	2.0	18	94	0	63	8	22	19	50	1.74
46120758--46120790	16	2.1	16	88	11	50	36	0	6	57	1.23
46128069--46128109	16	2.5	17	80	11	59	65	0	2	31	1.05
46129609--46129662	22	2.4	24	75	15	60	33	1	0	64	1.04
46130981--46131012	2	16.0	2	100	0	64	50	0	0	50	1.00
46134105--46134169	30	2.2	30	91	0	103	55	10	7	26	1.61
46134194--46134228	14	2.5	14	90	0	52	62	11	5	20	1.48
46139342--46139367	3	8.7	3	100	0	52	34	0	0	65	0.93
46139696--46139754	28	2.1	28	81	9	66	44	3	8	44	1.51
46150013--46150211	30	6.7	30	81	0	211	18	25	18	38	1.92
46164172--46164201	15	1.9	16	93	6	53	16	26	20	36	1.93
46166570--46166625	11	5.5	10	80	16	62	26	1	0	71	0.96
46166570--46166625	20	2.7	21	83	2	78	26	1	0	71	0.96
46168975--46169006	16	1.9	17	93	6	57	68	0	0	31	0.90
46169526--46169558	14	2.3	15	89	5	50	57	0	3	39	1.14
46170236--46170283	24	2.0	25	83	4	62	37	12	10	39	1.77
46174179--46174262	40	2.1	41	82	6	100	35	17	19	27	1.94
46174520--46174619	31	3.3	29	70	13	76	44	13	9	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46178320--46178373	21	2.6	21	78	0	63	25	11	29	33	1.91
46182160--46182231	31	2.4	31	85	2	92	51	11	13	23	1.73
46182160--46182242	31	2.7	31	83	1	87	50	9	14	25	1.73
46182770--46182818	20	2.6	18	87	12	71	30	6	6	57	1.48
46182778--46182815	19	1.9	19	94	5	67	34	5	7	52	1.53
46183082--46183149	19	3.7	18	69	16	50	38	1	1	58	1.16
46183078--46183128	24	2.2	23	85	3	66	37	0	1	60	1.08
46187786--46187831	21	2.3	20	79	20	53	47	0	2	50	1.13
46193286--46193390	22	4.7	22	76	10	97	4	5	20	68	1.29
46193387--46193487	23	4.4	22	71	17	62	8	6	18	65	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193