genome.fa.s4.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  186  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57997943--57998304	179	2.0	179	96	0	661	27	7	22	41	1.80
57998261--57998912	326	2.0	326	98	0	1268	27	11	21	40	1.87
58001371--58001402	14	2.3	14	94	0	55	18	6	43	31	1.75
58009082--58009131	20	2.5	21	84	12	61	32	28	12	28	1.92
58009120--58009161	18	2.3	18	87	0	57	30	14	16	38	1.89
58012634--58012671	17	2.2	17	86	9	51	73	2	10	13	1.19
58014963--58015012	20	2.5	22	84	12	63	28	12	28	32	1.92
58029782--58029820	18	2.2	18	85	0	51	71	2	23	2	1.10
58034288--58034357	34	2.1	34	83	5	88	48	1	4	45	1.30
58036096--58036134	11	3.4	11	83	13	51	51	0	0	48	1.00
58036101--58036128	13	2.2	13	100	0	56	64	0	0	35	0.94
58037937--58038087	61	2.5	60	84	2	176	36	1	17	44	1.58
58037934--58038088	30	5.1	30	87	1	184	35	1	19	43	1.59
58038378--58038430	26	2.0	26	85	7	72	39	20	0	39	1.53
58039738--58039950	40	5.3	40	73	13	170	28	15	23	31	1.96
58039739--58039950	80	2.6	79	84	1	280	27	16	24	32	1.96
58065680--58065934	59	4.3	58	82	3	303	35	5	28	30	1.81
58065794--58065904	30	3.7	30	70	17	97	31	6	29	32	1.82
58065680--58065934	118	2.2	118	86	1	341	35	5	28	30	1.81
58065916--58066113	30	6.6	30	89	4	303	34	3	25	36	1.73
58066210--58066523	162	1.9	162	89	3	490	46	12	16	25	1.81
58066257--58066606	162	2.2	161	81	5	402	50	11	16	22	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58067948--58068007	20	3.0	20	95	2	102	18	16	45	20	1.86
58068111--58068191	13	6.5	12	70	11	56	40	0	1	58	1.06
58068150--58068228	11	6.9	11	77	16	63	51	2	0	45	1.14
58068111--58068218	6	18.0	6	77	14	80	45	0	0	52	1.13
58068113--58068209	42	2.3	43	80	8	108	44	1	1	53	1.14
58074257--58074300	22	1.9	24	86	9	65	36	2	6	54	1.40
58074615--58074688	27	2.7	27	81	12	87	31	1	5	62	1.26
58074783--58074812	16	1.9	15	93	6	51	70	0	6	23	1.11
58076734--58076825	46	2.0	46	100	0	184	21	19	15	43	1.87
58079045--58079080	13	2.8	13	95	0	63	13	22	27	36	1.92
58092532--58092693	23	7.0	22	81	12	166	13	22	21	41	1.88
58092556--58092694	71	2.0	69	92	2	233	14	21	20	43	1.87
58092532--58092698	46	3.6	45	84	7	219	13	23	21	41	1.88
58092553--58092741	23	8.4	23	82	10	239	13	21	21	43	1.87
58092663--58092737	39	1.9	39	91	0	123	12	22	21	44	1.85
58092697--58092790	23	4.0	23	75	16	86	11	25	19	43	1.84
58100269--58100457	23	8.4	23	81	10	230	13	21	21	43	1.86
58100272--58100410	71	2.0	69	92	2	233	13	20	21	43	1.86
58100248--58100414	46	3.6	46	85	4	228	12	22	22	42	1.87
58100379--58100453	39	1.9	39	91	0	123	13	21	20	45	1.84
58101443--58101501	30	2.0	30	83	12	77	30	23	8	37	1.85
58101492--58101585	30	3.2	29	68	17	68	35	26	2	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58101658--58101747	29	3.1	28	72	24	80	35	27	3	33	1.74
58101668--58101759	30	3.2	30	71	25	97	33	29	3	33	1.74
58101461--58101943	59	8.2	59	82	5	521	32	29	3	34	1.75
58103497--58103561	6	10.8	6	77	12	71	41	4	0	53	1.21
58103486--58103560	17	4.6	17	81	9	93	40	4	1	54	1.27
58103502--58103560	31	1.9	31	96	0	109	40	5	0	54	1.23
58103568--58103600	12	2.8	12	86	4	50	57	3	0	39	1.14
58105444--58105786	29	11.8	30	69	17	172	32	26	2	38	1.68
58105496--58105845	59	6.0	58	77	11	297	33	24	1	39	1.66
58105768--58105874	29	3.7	29	70	15	85	33	25	4	36	1.77
58112647--58112744	29	3.4	28	70	13	74	37	20	25	16	1.93
58118313--58118393	26	3.0	27	75	7	85	44	9	13	32	1.77
58124732--58124765	17	2.0	17	88	0	50	50	0	2	47	1.16
58128472--58128510	14	2.7	15	88	7	55	51	0	0	48	1.00
58135201--58135237	19	2.1	19	85	10	51	62	5	0	32	1.18
58136621--58136652	15	2.0	17	88	11	50	9	3	25	62	1.40
58155415--58155458	22	2.0	22	82	8	54	56	4	0	38	1.20
58155455--58155512	27	2.1	28	84	9	75	29	1	17	51	1.55
58156408--58156585	77	2.3	77	85	1	241	26	22	20	30	1.98
58159036--58159068	15	2.2	15	94	0	57	6	24	33	36	1.80
58159177--58159296	6	20.0	6	89	0	186	35	0	18	45	1.56
58163188--58163223	15	2.4	15	90	0	54	2	25	36	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58166203--58166278	27	3.0	23	71	25	64	61	1	1	35	1.12
58166196--58166285	30	3.2	29	71	20	75	57	2	1	38	1.18
58166677--58166762	31	2.8	30	81	15	104	39	1	4	54	1.29
58166896--58166959	23	2.8	22	71	19	60	35	0	3	60	1.12
58166896--58167040	54	2.9	50	80	16	151	31	2	3	62	1.26
58175619--58175678	31	2.0	31	90	3	95	45	1	6	46	1.39
58181514--58181555	21	2.0	21	90	0	66	52	9	9	28	1.65
58184828--58184948	23	5.3	22	78	11	93	9	23	25	41	1.85
58201549--58201586	18	2.1	18	85	9	51	18	7	2	71	1.23
58216046--58216408	179	2.0	180	94	0	638	38	17	14	29	1.89
58221973--58222013	16	2.6	15	88	11	64	46	4	0	48	1.23
58222178--58222215	20	1.9	20	84	10	51	73	2	0	23	0.95
58227978--58228086	56	2.0	55	87	5	157	27	7	11	54	1.62
58229799--58229840	20	2.1	20	100	0	84	30	4	28	35	1.78
58230774--58230816	17	2.5	17	85	7	61	25	2	2	69	1.12
58244588--58244630	12	3.4	12	87	9	59	83	2	11	2	0.83
58245249--58245315	6	11.2	6	71	17	50	40	0	2	56	1.14
58245249--58245306	16	3.6	16	78	15	66	37	0	3	58	1.15
58245239--58245318	27	3.0	27	78	7	90	42	0	3	53	1.18
58245767--58245817	27	2.0	25	88	7	75	49	21	1	27	1.60
58246120--58246162	20	2.2	20	83	8	52	55	2	2	39	1.25
58246840--58247153	162	1.9	162	85	5	429	25	15	12	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58247237--58247323	30	3.0	30	85	6	108	37	22	2	36	1.67
58247303--58247399	30	3.3	30	69	23	96	31	28	6	32	1.82
58247309--58247483	59	3.0	59	89	1	271	30	29	5	34	1.81
58259348--58260123	68	11.5	68	93	3	1309	33	18	20	26	1.96
58259348--58260123	137	5.7	136	95	2	1309	33	18	20	26	1.96
58259348--58260123	205	3.8	205	95	2	1349	33	18	20	26	1.96
58259741--58260123	128	2.9	129	93	4	619	34	18	20	26	1.95
58260389--58260455	6	11.2	6	71	17	50	40	0	2	56	1.14
58260389--58260446	16	3.6	16	78	15	66	37	0	3	58	1.15
58260379--58260458	27	3.0	27	78	7	90	42	0	3	53	1.18
58260910--58260960	27	2.0	25	88	7	75	49	21	1	27	1.60
58261263--58261305	20	2.2	20	83	8	52	55	2	2	39	1.25
58261982--58262295	162	1.9	162	85	5	429	25	15	12	46	1.81
58262378--58262469	30	3.1	30	80	9	102	35	28	3	32	1.73
58262451--58262602	29	5.2	29	67	13	87	30	28	7	33	1.84
58262451--58262800	59	5.9	59	84	3	429	29	29	7	34	1.84
58262627--58262727	29	3.5	28	68	23	73	31	26	4	36	1.78
58265222--58265260	18	2.2	18	90	9	62	58	5	5	30	1.41
58285291--58285804	256	2.0	256	100	0	1028	45	17	12	24	1.83
58290133--58290218	36	2.4	36	76	9	93	34	25	13	25	1.93
58290390--58290416	9	3.0	9	100	0	54	11	11	11	66	1.45
58291634--58291697	18	3.5	18	73	14	51	32	25	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58291888--58291939	24	2.2	24	82	6	61	34	7	7	50	1.60
58295185--58295238	21	2.6	21	82	5	65	20	22	29	27	1.98
58295128--58296168	105	9.8	105	75	10	861	23	19	27	29	1.98
58295290--58295337	21	2.3	21	85	7	62	20	18	29	31	1.97
58295311--58295511	84	2.4	84	93	1	332	24	16	28	29	1.97
58295480--58295568	21	4.2	21	71	13	76	22	19	24	33	1.97
58295395--58295669	147	1.9	141	89	4	424	23	19	26	30	1.98
58295620--58295667	21	2.3	21	85	7	71	16	20	29	33	1.95
58295935--58295982	21	2.3	21	89	7	71	16	22	29	31	1.96
58295141--58296168	207	4.8	209	70	18	606	23	19	27	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193