genome.fa.s4.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  136  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42782729--42782770	21	2.0	21	100	0	84	28	4	28	38	1.77
42784244--42784279	18	1.9	18	88	5	54	41	5	0	52	1.24
42789709--42789778	31	2.3	31	79	0	77	48	12	10	28	1.74
42789955--42789980	2	13.0	2	100	0	52	50	0	0	50	1.00
42791122--42791192	31	2.3	31	87	0	97	49	22	9	18	1.77
42792853--42792932	24	3.3	24	85	0	97	50	8	11	30	1.68
42792872--42792944	24	3.1	23	84	2	83	50	6	10	31	1.64
42794877--42794927	24	2.1	24	88	0	75	56	9	11	21	1.63
42798267--42798547	30	9.4	30	85	4	363	34	1	23	40	1.62
42802389--42802669	30	9.4	30	84	4	318	35	1	22	40	1.63
42802446--42802669	89	2.5	89	82	5	281	35	1	22	40	1.62
42802388--42802671	149	1.9	149	89	5	439	35	1	22	40	1.63
42803777--42803814	20	1.9	20	89	10	60	34	0	0	65	0.93
42804526--42804596	11	5.9	11	71	18	52	54	1	1	42	1.17
42804705--42804880	29	6.0	29	81	5	192	35	24	3	36	1.74
42804717--42804879	59	2.8	58	85	4	229	34	23	4	36	1.75
42804718--42804909	59	3.2	59	80	5	217	34	22	4	39	1.73
42805392--42805423	16	2.0	16	100	0	64	31	6	25	37	1.81
42806631--42806684	28	1.9	28	81	7	65	66	5	5	22	1.34
42806692--42806771	31	2.5	32	80	13	85	73	5	1	20	1.08
42806722--42806773	20	2.6	19	79	8	68	73	3	0	23	1.00
42806692--42806775	13	6.6	12	70	15	53	73	4	1	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42807521--42807585	10	6.5	10	70	7	51	67	4	3	24	1.24
42807528--42807584	19	2.9	19	71	7	51	66	3	3	26	1.24
42812875--42812932	15	3.9	15	73	10	57	32	3	3	60	1.30
42812967--42813013	23	2.0	23	100	0	94	29	8	12	48	1.71
42825960--42825990	12	2.6	12	94	0	53	45	0	6	48	1.28
42826588--42826652	30	2.2	30	83	5	78	35	1	9	53	1.42
42826729--42826788	27	2.2	27	84	3	75	36	0	8	55	1.30
42826761--42826851	6	15.0	6	76	11	78	48	2	1	48	1.21
42826752--42826825	17	4.6	16	83	11	89	39	1	2	56	1.22
42826877--42826931	23	2.4	23	96	0	101	36	34	12	16	1.87
42827688--42827729	22	1.9	22	85	0	57	59	2	0	38	1.10
42828048--42828095	21	2.3	21	85	7	71	75	4	12	8	1.18
42828575--42828637	11	5.5	11	83	5	81	41	3	1	53	1.26
42828585--42828653	17	4.1	16	83	12	77	43	1	2	52	1.25
42828582--42828636	6	9.7	6	78	11	62	43	1	1	52	1.22
42828682--42828717	14	2.6	14	90	0	54	41	30	8	19	1.81
42830223--42830535	160	1.9	163	89	4	483	25	15	12	46	1.82
42830223--42830589	163	2.3	159	83	7	413	24	17	14	43	1.86
42830632--42830950	30	10.6	30	88	4	482	37	24	3	34	1.71
42830632--42830950	151	2.1	149	92	1	530	37	24	3	34	1.71
42830632--42830944	91	3.5	89	90	4	486	38	23	3	35	1.71
42830660--42831270	59	10.4	56	83	9	420	34	26	4	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42830932--42831272	58	5.9	59	91	2	548	31	27	4	36	1.78
42830932--42831272	117	2.9	117	93	1	571	31	27	4	36	1.78
42846004--42846611	68	8.9	68	90	3	882	34	15	19	30	1.93
42846000--42846611	206	3.0	202	89	5	899	34	15	19	30	1.93
42846001--42846611	274	2.2	274	93	2	1041	34	15	19	30	1.93
42846965--42847012	21	2.3	21	85	7	71	75	4	12	8	1.18
42847492--42847554	11	5.5	11	83	5	81	41	3	1	53	1.26
42847502--42847570	17	4.1	16	83	12	77	43	1	2	52	1.25
42847499--42847553	6	9.7	6	78	11	62	43	1	1	52	1.22
42847597--42847643	14	3.5	14	82	11	62	36	29	19	14	1.92
42847755--42847785	15	2.1	15	100	0	62	19	54	12	12	1.70
42849141--42849450	163	1.9	163	90	3	493	25	16	12	46	1.82
42849547--42849897	30	11.6	30	86	1	495	37	23	3	35	1.73
42849547--42849897	91	3.9	90	90	0	531	37	23	3	35	1.73
42849547--42850219	60	11.3	59	81	9	482	34	24	4	36	1.75
42849849--42850220	58	6.4	59	89	3	531	31	26	4	37	1.77
42849879--42850220	117	2.9	117	92	0	562	31	26	4	37	1.77
42851628--42851857	30	7.7	30	86	2	313	37	23	3	35	1.73
42851639--42851857	60	3.7	60	93	1	352	37	22	3	36	1.72
42858986--42859050	30	2.2	30	83	5	78	35	1	9	53	1.42
42859127--42859186	27	2.2	27	84	3	75	36	0	8	55	1.30
42859159--42859249	6	15.0	6	76	11	78	48	2	1	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42859150--42859223	17	4.6	16	83	11	89	39	1	2	56	1.22
42860063--42860104	22	1.9	22	85	0	57	57	2	2	38	1.25
42861128--42861410	30	9.4	29	88	4	361	39	23	1	35	1.65
42861247--42861303	19	3.4	19	65	34	58	38	26	3	31	1.73
42861118--42861419	91	3.3	89	85	5	410	39	24	1	34	1.67
42861402--42861587	59	3.2	59	73	4	155	26	29	5	38	1.78
42870448--42870475	4	7.0	4	100	0	56	75	0	0	25	0.81
42872356--42872396	19	2.2	20	86	8	59	24	0	4	70	1.06
42872351--42872405	29	2.0	29	85	7	78	25	0	3	70	1.03
42875292--42875337	23	2.0	24	86	4	67	54	2	6	36	1.39
42876862--42876933	16	4.5	16	82	3	83	38	8	27	25	1.84
42877061--42877211	58	2.6	59	85	6	209	53	1	0	43	1.16
42881106--42881146	12	3.2	12	81	18	55	58	9	2	29	1.43
42881555--42881619	28	2.2	30	81	8	71	52	0	6	41	1.26
42882443--42882483	18	2.2	18	82	4	55	51	0	2	46	1.14
42882889--42882934	23	2.0	23	82	0	56	52	17	8	21	1.71
42890237--42890275	21	1.9	21	84	5	53	23	20	10	46	1.81
42893171--42893208	18	2.1	18	85	9	51	50	13	10	26	1.73
42895351--42895412	30	2.1	30	100	0	124	22	12	14	50	1.77
42895630--42895691	24	2.6	23	72	10	54	54	1	0	43	1.09
42896696--42896785	6	15.0	6	73	16	71	44	3	1	51	1.25
42896686--42896781	11	8.7	11	69	8	52	42	3	2	52	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42896686--42896777	17	5.6	17	73	7	82	42	3	2	52	1.30
42898367--42898704	162	2.1	162	89	0	516	25	18	12	43	1.85
42898807--42898876	29	2.4	28	77	15	72	35	22	2	38	1.69
42898830--42899199	29	12.6	29	70	21	197	33	28	2	35	1.70
42898832--42899199	59	6.3	59	92	2	582	33	28	2	35	1.70
42898832--42899199	175	2.1	177	92	1	616	33	28	2	35	1.70
42898832--42899241	175	2.3	175	89	2	592	32	29	3	34	1.74
42898832--42899241	59	7.0	58	88	4	529	32	29	3	34	1.74
42911366--42912344	38	26.2	37	66	22	235	33	15	19	30	1.93
42911264--42911923	76	8.9	74	85	7	753	32	15	19	32	1.93
42911264--42911923	73	8.9	73	83	10	681	32	15	19	32	1.93
42911616--42911735	31	3.7	31	72	20	111	33	17	20	29	1.95
42911953--42912356	76	5.3	76	89	3	582	34	15	19	30	1.93
42911758--42912116	195	1.8	193	91	1	592	34	15	17	31	1.92
42912644--42912733	6	15.0	6	73	16	71	44	3	1	51	1.25
42912634--42912729	11	8.7	11	69	8	52	42	3	2	52	1.29
42912634--42912725	17	5.6	17	73	7	82	42	3	2	52	1.30
42914318--42914656	162	2.1	162	89	0	525	26	18	12	43	1.85
42914727--42914887	29	5.5	28	72	15	103	36	24	4	34	1.76
42914785--42915099	59	5.4	58	92	2	506	33	29	2	34	1.71
42917276--42917467	28	7.1	28	72	11	168	33	16	27	21	1.95
42917262--42917467	80	2.6	80	88	1	297	33	16	28	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42917260--42917473	52	4.0	53	76	11	181	32	16	28	21	1.96
42923139--42923163	13	1.9	13	100	0	50	32	12	32	24	1.91
42931399--42931443	19	2.3	20	85	14	60	31	0	13	55	1.38
42932349--42932383	18	1.9	18	100	0	70	42	5	28	22	1.76
42933011--42933099	29	3.1	29	98	0	169	50	3	7	38	1.48
42934020--42934068	20	2.7	17	77	22	55	63	2	0	34	1.06
42934029--42934072	17	2.3	20	88	11	67	65	0	0	34	0.93
42934029--42934069	18	2.2	20	86	8	59	65	0	0	34	0.93
42942592--42942653	11	5.6	11	81	7	63	24	27	27	20	1.99
42945089--42945122	14	2.3	14	90	10	50	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193