genome.fa.s4.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  184  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57378544--57378585	20	2.1	20	86	8	59	4	2	19	73	1.12
57395060--57395104	24	1.9	23	86	4	63	64	0	2	33	1.06
57395714--57395763	25	2.0	25	100	0	100	36	12	8	44	1.71
57396608--57396649	2	21.0	2	100	0	84	0	50	0	50	1.00
57396649--57396681	2	16.5	2	100	0	66	48	0	0	51	1.00
57402332--57402379	13	3.6	13	80	2	60	58	6	2	33	1.35
57403058--57403093	3	12.0	3	100	0	72	33	0	0	66	0.92
57404302--57404326	7	3.6	7	100	0	50	16	0	0	84	0.63
57405041--57405083	21	2.0	23	86	9	63	44	0	0	55	0.99
57415999--57416084	32	2.8	32	84	7	88	27	10	9	52	1.66
57420070--57420139	35	1.9	36	88	5	106	28	24	11	35	1.90
57420172--57420234	26	2.4	26	94	0	108	26	28	12	31	1.93
57420381--57420446	17	3.9	17	75	15	73	43	1	4	50	1.32
57421272--57421303	10	3.2	10	90	0	55	59	0	0	40	0.97
57422361--57422730	119	3.1	119	86	3	480	33	30	2	33	1.70
57422634--57422730	31	3.2	31	71	15	94	31	27	1	39	1.64
57422361--57422730	59	6.3	59	84	4	444	33	30	2	33	1.70
57432793--57432843	2	25.5	2	100	0	102	49	0	0	50	1.00
57447157--57447198	7	6.0	7	100	0	84	28	14	28	28	1.95
57447183--57447774	235	2.5	235	96	0	1096	30	14	19	35	1.91
57451078--57451130	25	2.0	26	82	14	63	45	7	7	39	1.61
57456793--57456838	24	1.9	24	86	0	65	21	4	6	67	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57458236--57458352	44	2.6	45	86	1	173	52	4	2	41	1.35
57470910--57470970	31	2.0	31	84	9	81	37	9	9	42	1.71
57473805--57473850	20	2.3	21	78	14	53	54	0	2	43	1.12
57474706--57474784	29	2.6	31	82	6	90	49	2	2	45	1.29
57474725--57474792	32	2.2	29	84	10	82	48	2	2	45	1.32
57478100--57478134	14	2.4	15	90	4	54	48	17	5	28	1.69
57480773--57480824	20	2.7	20	79	8	54	63	1	1	32	1.16
57480783--57480840	19	3.1	18	78	14	55	65	1	1	31	1.13
57481441--57481707	9	28.1	9	64	18	71	34	2	5	57	1.35
57481440--57481483	20	2.2	20	84	4	63	27	2	4	65	1.23
57481534--57481596	19	3.4	18	76	12	56	33	3	7	55	1.45
57483325--57483393	34	2.0	34	100	0	138	42	20	0	37	1.52
57486814--57486883	19	3.7	19	75	9	63	50	1	0	48	1.09
57495676--57495719	23	1.9	23	81	9	54	59	4	2	34	1.30
57498674--57498720	23	2.1	23	96	4	87	34	29	23	12	1.92
57498742--57498834	23	4.0	23	94	0	150	43	19	26	10	1.84
57498742--57498895	46	3.5	46	74	15	164	44	18	25	11	1.84
57498772--57498894	60	2.0	60	92	0	201	46	16	24	13	1.82
57498795--57498871	37	2.1	37	87	0	109	46	14	24	14	1.81
57498832--57498895	23	2.8	23	87	0	92	46	17	23	12	1.81
57502216--57502327	59	1.9	59	88	3	172	27	21	15	35	1.93
57512429--57512492	31	2.1	31	94	2	112	25	6	26	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57518627--57518665	11	3.5	11	78	0	51	58	2	12	25	1.47
57519035--57519064	2	15.5	2	93	6	53	50	0	0	50	1.00
57524579--57524614	11	3.6	10	92	7	56	66	0	0	33	0.92
57524567--57524631	20	3.4	18	76	15	60	64	1	0	33	1.03
57524565--57524631	9	7.1	9	80	11	64	65	1	0	32	1.02
57528763--57528801	20	2.0	20	85	10	53	23	7	35	33	1.83
57531856--57531895	21	1.9	21	85	10	55	60	5	2	32	1.32
57532435--57532493	17	3.7	16	75	20	61	62	3	0	33	1.12
57532762--57532825	10	6.5	10	71	15	53	37	1	4	56	1.30
57532792--57532834	19	2.2	20	84	12	54	32	0	4	62	1.15
57533089--57533262	88	2.0	88	95	0	312	32	18	10	37	1.86
57536395--57536436	21	2.0	22	90	4	68	73	14	0	11	1.09
57537302--57537368	26	2.6	26	82	0	80	23	14	23	37	1.93
57537639--57537676	18	2.1	18	90	9	60	50	15	10	23	1.75
57540687--57540716	9	3.3	9	90	0	51	53	0	23	23	1.46
57540755--57540819	29	2.3	28	80	15	71	33	0	3	63	1.10
57545368--57545393	7	3.7	7	100	0	52	38	0	0	61	0.96
57547166--57547595	59	7.3	59	88	4	643	33	2	30	33	1.72
57547253--57547571	30	10.8	30	67	26	127	33	2	30	33	1.71
57548734--57548775	3	14.0	3	100	0	84	33	0	0	66	0.92
57549491--57549524	11	2.8	12	86	13	52	41	0	0	58	0.98
57549497--57549564	17	3.7	17	71	21	57	45	1	0	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57549495--57549576	18	4.5	17	74	15	65	48	1	1	48	1.17
57564441--57564514	29	2.5	29	79	16	80	52	13	13	20	1.73
57567925--57567970	15	3.1	14	87	9	56	65	0	2	32	1.05
57568736--57568765	3	10.0	3	100	0	60	66	0	33	0	0.92
57569153--57569220	30	2.3	30	85	10	86	45	2	5	45	1.42
57569913--57569960	25	1.9	25	91	0	78	47	12	0	39	1.41
57570018--57570066	18	2.8	18	82	11	66	53	8	0	38	1.31
57579586--57579645	25	2.5	23	82	17	61	73	6	1	18	1.14
57579809--57579868	29	2.0	30	87	9	88	48	15	5	31	1.66
57583757--57583793	17	2.1	18	85	14	51	45	0	0	54	1.00
57586723--57586756	16	2.1	16	88	0	50	0	23	0	76	0.79
57586723--57586756	11	3.1	11	91	0	50	0	23	0	76	0.79
57589978--57590032	25	2.2	24	78	9	58	58	5	5	30	1.44
57590457--57590482	13	2.0	13	100	0	52	23	46	7	23	1.78
57594617--57594761	9	15.6	9	68	16	73	62	1	2	34	1.16
57594629--57594678	19	2.5	20	77	6	57	64	2	4	30	1.23
57594648--57594734	29	3.0	28	74	14	79	59	1	0	39	1.05
57594677--57594731	19	2.8	19	81	8	58	58	0	0	41	0.98
57594691--57594753	20	3.2	20	80	6	58	58	0	1	39	1.07
57594701--57594769	19	3.6	19	76	5	59	65	1	1	31	1.11
57594626--57594760	48	2.8	46	77	15	132	61	1	2	34	1.17
57595055--57595106	24	2.1	24	85	7	68	42	1	0	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57595733--57595778	20	2.3	21	75	17	53	32	0	0	67	0.91
57596395--57596444	22	2.2	23	85	3	66	62	14	12	12	1.56
57597767--57597838	23	3.1	23	79	2	81	5	1	23	69	1.17
57597765--57597806	12	3.4	12	78	15	50	2	0	26	71	0.98
57597766--57597827	24	2.6	23	78	17	63	6	1	22	69	1.20
57597864--57597908	23	2.0	23	90	0	72	24	8	4	62	1.43
57597870--57597917	23	2.1	23	88	0	69	29	2	6	62	1.31
57598338--57598423	24	3.2	26	76	18	79	56	9	8	25	1.58
57598307--57598423	29	4.2	28	76	14	118	54	8	8	28	1.60
57599370--57599457	39	2.3	39	86	4	115	53	5	3	37	1.42
57599518--57599560	17	2.4	18	80	7	52	32	2	13	51	1.54
57600780--57600898	59	2.0	59	100	0	238	40	20	6	32	1.78
57601791--57601853	28	2.2	28	83	8	74	23	17	1	57	1.49
57602532--57602589	6	10.2	6	83	10	77	46	1	0	51	1.11
57602541--57602587	23	2.0	23	91	0	76	48	2	0	48	1.13
57602522--57602584	12	5.6	11	83	9	58	42	1	1	53	1.19
57602532--57602589	17	3.4	16	88	9	80	46	1	0	51	1.11
57602522--57602587	11	5.9	11	77	10	62	45	1	1	51	1.19
57604479--57604844	120	3.1	120	89	2	560	38	19	4	37	1.71
57604509--57604873	30	12.2	30	81	6	402	39	20	3	36	1.69
57604865--57605058	59	3.3	56	70	9	149	29	27	4	38	1.75
57604865--57605083	117	1.9	117	79	7	248	31	27	3	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57614026--57614105	28	2.8	29	77	5	92	35	17	22	25	1.95
57619315--57619372	18	3.1	18	76	9	62	67	1	1	29	1.11
57619289--57619372	38	2.2	36	85	6	105	66	1	2	29	1.11
57619311--57619399	30	2.9	30	83	5	90	61	1	2	34	1.15
57624275--57624321	6	7.8	6	82	0	58	12	38	12	36	1.82
57624272--57624321	24	2.1	24	88	0	73	12	38	12	38	1.80
57624269--57624321	18	2.9	18	77	0	61	11	37	13	37	1.80
57635517--57635557	17	2.4	17	83	0	55	56	4	0	39	1.21
57635953--57636041	27	3.3	26	72	12	81	44	25	8	20	1.80
57635964--57636044	27	3.0	27	77	10	94	43	23	9	23	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193