genome.fa.s4.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  163  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50598928--50599250	160	2.0	160	94	0	565	41	23	15	19	1.90
50604647--50605185	196	2.8	195	91	2	854	28	15	24	31	1.95
50608493--50608703	79	2.7	79	80	2	237	23	23	26	27	2.00
50618560--50618600	15	2.7	15	92	0	64	43	0	39	17	1.49
50624786--50624838	24	2.3	22	83	6	61	54	1	1	41	1.22
50624898--50624932	8	4.1	9	85	14	56	42	0	0	57	0.99
50624898--50624932	17	2.1	17	94	0	61	42	0	0	57	0.99
50624923--50624986	29	2.3	27	83	5	74	45	3	1	50	1.27
50626718--50627025	164	1.9	164	91	1	501	36	12	21	29	1.90
50636840--50636864	9	2.8	9	100	0	50	12	0	0	88	0.53
50636985--50637010	13	2.0	13	100	0	52	15	15	0	69	1.20
50647923--50647991	31	2.3	31	84	2	95	37	8	13	40	1.75
50662264--50662656	155	2.5	157	94	1	673	24	20	23	31	1.98
50673047--50673113	21	3.2	21	77	8	57	44	7	4	43	1.52
50675821--50675930	55	2.0	54	96	1	202	56	24	2	16	1.53
50675928--50675971	16	2.7	17	82	10	56	47	4	13	34	1.63
50676252--50676298	16	2.8	17	77	6	51	51	4	0	44	1.21
50677046--50677093	24	2.0	24	87	0	69	27	12	6	54	1.61
50677048--50677099	24	2.2	24	82	0	59	30	13	7	48	1.71
50678980--50679042	24	2.6	24	79	0	72	25	14	11	49	1.76
50680867--50680914	16	3.1	15	77	14	53	70	0	2	27	0.98
50682796--50682840	19	2.2	21	84	7	58	24	11	6	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50683223--50683272	23	2.1	25	85	7	68	62	12	4	22	1.46
50686311--50686349	22	1.9	20	85	15	53	69	2	10	17	1.28
50686840--50686865	3	8.7	3	100	0	52	69	0	30	0	0.89
50687171--50687227	23	2.4	23	80	11	62	43	0	0	56	0.99
50688490--50688562	29	2.6	29	78	6	87	58	4	0	36	1.17
50688515--50688558	14	3.1	14	76	3	52	63	6	0	29	1.20
50688504--50688558	29	1.9	30	89	10	89	65	5	0	29	1.15
50691692--50691731	21	1.9	21	94	0	71	55	0	32	12	1.38
50692998--50693061	29	2.2	29	86	8	85	45	10	9	34	1.72
50693007--50693065	29	2.0	30	93	3	102	45	13	8	32	1.74
50697141--50697230	28	3.1	28	76	12	74	33	0	0	66	0.92
50701615--50701677	29	2.1	30	97	2	119	26	9	9	53	1.64
50709749--50709909	47	3.4	47	93	0	259	19	16	18	44	1.87
50709877--50709939	30	2.1	30	93	0	108	20	15	17	46	1.85
50712810--50712858	24	2.1	24	85	11	66	30	6	8	55	1.54
50713110--50713152	22	2.0	20	83	16	52	32	4	0	62	1.15
50715489--50715541	26	2.0	26	100	0	106	39	15	22	22	1.91
50717113--50717147	6	5.8	6	100	0	70	51	0	31	17	1.45
50718383--50718421	19	2.1	19	85	0	51	61	0	0	38	0.96
50718395--50718445	16	3.4	15	76	12	52	64	1	0	33	1.05
50719278--50719303	2	13.0	2	100	0	52	50	0	0	50	1.00
50724379--50725575	334	3.6	335	81	3	1297	33	24	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50727384--50727425	20	2.2	20	87	8	61	69	0	7	23	1.13
50727903--50728003	37	2.7	38	74	15	95	31	5	0	61	1.27
50727954--50728036	9	8.6	10	70	13	50	33	1	0	65	1.01
50727953--50728006	27	2.0	27	85	7	74	37	1	0	61	1.07
50727981--50728025	21	2.1	21	87	0	63	33	2	0	64	1.06
50727953--50728037	29	2.9	29	80	13	86	34	1	0	64	1.01
50727964--50728037	29	2.6	29	81	10	89	31	1	0	67	0.99
50728018--50728050	15	2.1	16	94	5	59	18	3	0	78	0.87
50729941--50729967	8	3.4	8	100	0	54	33	14	0	51	1.43
50730198--50730245	14	3.3	14	77	16	53	37	2	2	58	1.22
50735011--50735044	8	4.1	8	85	7	50	41	0	0	58	0.98
50735911--50735954	23	1.9	22	81	9	52	45	4	4	45	1.44
50747420--50747463	2	22.0	2	90	0	70	50	4	0	45	1.22
50753236--50753296	29	2.1	30	87	3	88	63	9	3	22	1.39
50753295--50753386	38	2.4	40	80	12	111	52	11	11	23	1.72
50753321--50753406	39	2.2	39	87	6	122	44	12	19	23	1.85
50755083--50755533	167	2.7	169	82	5	554	38	21	16	23	1.92
50756768--50756826	31	1.9	31	89	0	91	50	13	3	32	1.58
50756937--50757039	46	2.4	44	83	8	104	49	0	1	47	1.19
50780135--50780175	5	8.0	5	89	5	64	36	0	2	60	1.10
50781231--50781323	31	3.0	31	75	6	98	44	11	10	33	1.76
50782473--50782518	17	2.5	19	83	13	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50787388--50787436	23	2.2	22	82	10	55	67	4	12	16	1.37
50787949--50787981	16	1.9	18	88	11	52	63	0	6	30	1.18
50788895--50788942	18	2.7	18	96	0	87	10	31	10	47	1.71
50800307--50800941	117	5.3	117	80	5	603	37	29	8	24	1.85
50800369--50800930	242	2.4	234	82	5	682	37	29	8	24	1.85
50801352--50801387	16	2.2	17	90	5	56	66	5	8	19	1.38
50803355--50803425	31	2.2	32	78	12	74	49	8	12	29	1.70
50805712--50805754	14	3.0	15	76	13	54	60	18	4	16	1.52
50805714--50805763	14	3.4	15	76	15	52	62	18	8	12	1.53
50806894--50807069	60	3.0	60	82	5	205	34	26	1	36	1.67
50806864--50807099	89	2.6	90	80	7	257	33	25	2	37	1.71
50806868--50807099	30	7.8	28	80	7	149	33	25	3	37	1.72
50806859--50807099	60	4.0	58	79	6	196	33	26	3	36	1.73
50807387--50807978	315	1.9	316	87	1	882	33	18	15	32	1.92
50811378--50811435	9	6.4	9	78	13	50	22	3	8	65	1.36
50811389--50811434	17	2.6	19	83	13	62	21	2	6	69	1.22
50820000--50820046	24	2.0	24	83	8	60	51	2	4	42	1.33
50826032--50826079	17	2.8	17	87	6	62	56	0	6	37	1.25
50828287--50828348	29	2.1	31	81	6	74	46	1	9	41	1.46
50840101--50840177	28	2.6	30	78	12	88	57	3	0	38	1.17
50843818--50843861	23	1.9	23	86	9	63	56	2	11	29	1.46
50846223--50846261	18	2.2	18	95	0	69	46	20	5	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50848860--50848916	29	1.9	30	89	3	89	57	10	1	29	1.42
50850562--50850594	12	2.6	13	85	9	50	72	0	0	27	0.85
50851156--50851194	16	2.4	16	84	16	53	58	2	0	38	1.12
50851432--50851465	17	1.9	18	88	5	52	73	0	0	26	0.83
50854150--50854210	31	2.0	31	90	6	97	29	8	11	50	1.67
50854152--50854218	31	2.2	31	86	5	91	31	8	11	47	1.71
50858378--50858567	104	1.8	104	89	0	299	26	5	24	43	1.75
50871109--50871906	261	3.0	268	87	7	1123	46	16	7	29	1.74
50876080--50876130	21	2.3	22	74	16	52	25	0	49	25	1.51
50880389--50880453	30	2.2	30	81	15	73	63	4	3	29	1.30
50884235--50884710	130	3.6	129	85	7	618	19	7	19	52	1.70
50892529--50892586	23	2.7	21	82	10	71	74	20	1	3	1.06
50892538--50892609	23	3.2	23	76	5	58	73	16	4	5	1.18
50892535--50892588	12	4.7	12	79	6	58	74	20	1	3	1.07
50892570--50892610	21	2.0	21	90	0	64	75	12	4	7	1.16
50899307--50899373	31	2.2	31	91	0	107	37	11	17	32	1.87
50904511--50904550	19	2.2	19	86	4	55	35	0	5	60	1.19
50906242--50906281	5	8.2	5	88	5	64	57	0	0	42	0.98
50906983--50907039	29	1.9	30	85	3	80	43	1	14	40	1.55
50921653--50921699	24	1.9	24	86	4	67	51	0	0	48	1.00
50933646--50933689	22	2.0	22	100	0	88	59	0	22	18	1.38
50935878--50935942	30	2.1	31	91	2	105	35	10	9	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50935884--50935957	30	2.5	28	85	10	87	35	8	9	47	1.66
50937832--50937945	54	2.1	54	96	1	210	37	14	14	32	1.88
50937932--50937975	2	22.0	2	100	0	88	50	0	0	50	1.00
50938193--50938231	7	5.6	7	81	0	51	35	2	20	41	1.66
50938191--50938231	21	2.0	21	90	0	64	36	2	21	39	1.67
50950443--50950469	2	13.5	2	100	0	54	48	0	0	51	1.00
50951302--50951385	17	4.8	17	76	4	78	38	2	7	52	1.42
50951353--50951394	17	2.4	17	88	4	57	45	0	4	50	1.23
50953282--50953563	29	9.6	28	67	19	148	32	30	4	32	1.77
50953284--50953601	59	5.4	58	87	3	458	32	31	4	31	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193