genome.fa.s4.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  38  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11688832--11688932	10	10.3	10	69	10	66	24	3	1	69	1.16
11688880--11688939	20	3.0	20	74	13	61	25	3	1	70	1.12
11688800--11688921	29	4.2	29	74	15	101	27	4	4	63	1.33
11690657--11690833	90	2.0	88	84	2	228	37	19	7	35	1.81
11690867--11690939	28	2.7	26	79	8	74	54	2	1	41	1.23
11690939--11691029	28	3.1	29	71	15	78	59	0	3	37	1.14
11691019--11691091	19	3.7	21	72	17	59	56	2	8	32	1.43
11691367--11691557	83	2.3	81	82	6	206	37	8	11	42	1.73
11696717--11697277	187	3.0	189	89	3	876	43	20	11	24	1.85
11697777--11697801	12	2.1	12	100	0	50	8	8	0	84	0.79
11698166--11698248	33	2.5	33	88	0	112	28	4	19	46	1.70
11700207--11700268	31	2.1	29	84	6	79	45	17	8	29	1.77
11701569--11701654	43	2.0	43	88	0	127	32	9	3	54	1.49
11706348--11706392	23	1.9	24	86	13	67	64	0	6	28	1.19
11712260--11712307	19	2.3	22	86	10	66	66	0	0	33	0.92
11712270--11712313	22	2.1	20	83	8	52	72	0	0	27	0.85
11715755--11715779	7	3.6	7	100	0	50	0	0	12	88	0.53
11717549--11717605	19	2.9	19	84	7	71	57	1	1	38	1.19
11717549--11717679	20	6.2	20	69	18	61	57	2	2	38	1.24
11719514--11719561	24	2.0	23	84	11	62	66	2	0	31	1.03
11719521--11719667	75	2.0	73	90	2	231	59	9	1	29	1.37
11725556--11725585	7	4.4	7	95	4	53	13	10	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11733318--11733374	25	2.2	25	81	9	62	38	26	7	28	1.82
11737578--11737808	28	8.2	28	75	8	193	28	18	19	34	1.95
11737606--11737808	56	3.6	56	81	2	237	28	18	19	33	1.95
11737574--11737809	84	2.8	82	81	7	219	28	18	19	33	1.95
11740799--11740826	14	2.0	14	100	0	56	42	0	7	50	1.30
11740776--11740896	37	3.0	38	83	15	154	36	4	14	45	1.64
11740813--11740955	23	6.2	23	82	4	173	34	4	14	46	1.64
11741025--11741138	36	3.2	36	86	7	160	30	12	21	35	1.90
11745757--11745794	12	3.1	12	92	3	58	15	26	0	57	1.38
11754546--11754580	17	2.1	17	100	0	70	54	28	0	17	1.43
11756820--11756844	6	4.2	6	100	0	50	16	0	32	52	1.44
11762821--11762900	39	2.1	39	100	0	160	43	5	12	38	1.64
11763157--11763268	42	2.7	42	88	1	163	41	8	25	23	1.83
11771297--11771360	29	2.2	29	91	2	103	29	7	14	48	1.71
11773352--11773403	17	2.9	17	82	5	50	32	3	9	53	1.51
11773377--11773412	19	1.9	18	88	5	54	27	2	13	55	1.52
11786106--11786144	20	2.0	20	89	0	60	58	12	2	25	1.47
11787262--11787317	24	2.4	24	84	3	69	26	8	8	55	1.60
11787282--11787329	24	2.0	24	84	8	62	27	8	10	54	1.63
11787419--11787475	28	2.0	28	96	0	105	42	21	8	28	1.82
11789275--11789361	24	3.6	24	83	6	113	27	14	9	48	1.75
11798457--11798500	18	2.4	18	77	7	54	54	0	11	34	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11798744--11798801	23	2.7	21	80	17	66	34	0	1	63	1.04
11802084--11802126	22	2.0	22	85	0	59	25	9	25	39	1.85
11809311--11809349	17	2.3	17	95	0	69	30	5	28	35	1.79
11817774--11817842	27	2.4	29	78	7	79	31	20	27	20	1.97
11819521--11819549	14	2.1	14	100	0	58	20	20	27	31	1.98
11820034--11820071	19	2.0	19	89	0	58	42	13	34	10	1.78
11829299--11829733	217	2.0	217	96	0	807	36	13	29	20	1.91
11834364--11834409	21	2.2	21	100	0	92	26	23	32	17	1.97
11834397--11834888	49	10.0	50	70	7	319	37	18	24	19	1.94
11834389--11834605	99	2.2	98	84	2	274	36	20	25	17	1.94
11834397--11834641	99	2.5	99	80	5	230	37	20	25	16	1.93
11834432--11834750	147	2.2	148	86	2	428	37	17	25	19	1.94
11834432--11834813	147	2.6	146	81	4	376	36	18	24	20	1.94
11834574--11834912	98	3.5	98	80	3	378	38	16	23	21	1.93
11835511--11836797	642	2.0	642	99	0	2538	34	24	18	22	1.96
11845554--11845586	13	2.3	15	90	10	52	54	0	3	42	1.15
11845660--11845691	2	17.0	2	87	12	50	50	0	0	50	1.00
11846907--11846951	14	3.1	14	81	12	54	51	0	0	48	1.00
11862166--11862282	27	4.3	27	77	12	105	24	7	10	57	1.58
11865864--11865916	17	2.9	19	76	15	58	32	1	5	60	1.31
11875716--11875761	7	6.7	7	95	5	85	0	69	0	30	0.89
11875716--11875761	20	2.2	20	96	3	83	0	69	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11880178--11880346	50	3.4	50	78	5	173	20	21	21	36	1.95
11884360--11884409	15	3.3	15	84	13	59	2	20	0	78	0.86
11901544--11901675	70	1.9	67	83	4	165	32	12	12	42	1.80
11904224--11904262	12	3.1	12	88	7	51	79	5	0	15	0.90
11906723--11906832	30	3.7	29	82	9	132	50	1	0	47	1.11
11906739--11906814	29	2.6	29	87	4	98	52	2	0	44	1.14
11907117--11907169	4	12.2	4	82	13	52	67	0	1	30	1.01
11907116--11907144	13	2.2	13	100	0	58	79	0	0	20	0.74
11912135--11912373	119	2.0	120	91	2	392	33	15	24	26	1.95
11912910--11913030	51	2.4	51	79	5	120	42	10	23	22	1.85
11913313--11913394	33	2.5	33	79	0	101	46	14	20	18	1.84
11914764--11914804	23	1.9	23	85	14	61	24	17	0	58	1.38
11918701--11919465	381	2.0	381	100	0	1530	34	12	17	35	1.87
11919552--11919593	21	2.0	21	85	0	57	33	7	16	42	1.75
11921723--11921760	19	2.0	20	85	15	53	57	5	0	36	1.21
11921722--11921767	20	2.3	20	78	14	51	56	4	0	39	1.19
11928012--11928041	4	7.2	4	92	7	51	30	0	0	70	0.88
11931716--11931913	73	2.7	72	84	2	236	27	21	28	22	1.99
11932003--11932149	39	3.8	38	77	7	125	38	19	17	25	1.92
11935932--11936010	37	2.1	38	80	2	88	32	24	18	24	1.97
11936137--11936173	18	2.1	18	89	0	56	24	27	0	48	1.51
11946049--11946081	11	3.0	11	90	0	57	33	0	3	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11952425--11952463	3	13.0	3	94	0	69	30	2	0	66	1.05
11955673--11955705	11	3.0	11	90	0	57	33	0	3	63	1.10
11955696--11955725	14	2.1	14	93	0	51	20	6	3	70	1.25
11958387--11958557	39	4.4	39	82	3	184	36	21	18	23	1.95
11958413--11958593	39	4.6	39	77	9	131	34	20	20	24	1.96
11960192--11960343	80	1.9	80	84	2	207	39	3	3	53	1.36
11960193--11960362	80	2.1	79	81	5	191	40	2	4	51	1.38
11960271--11960510	127	1.9	130	87	2	360	39	5	5	48	1.51
11970876--11970928	21	2.5	21	90	0	79	45	22	9	22	1.81
11988658--11988708	21	2.4	21	90	0	84	52	13	5	27	1.63
11988695--11988727	13	2.5	13	86	13	50	54	12	0	33	1.37
11991088--11991246	61	2.6	61	80	4	171	40	16	5	37	1.71
11992309--11992342	17	2.0	17	88	0	50	64	2	0	32	1.08
11996891--11996938	24	2.0	24	100	0	96	50	12	12	25	1.75
11998730--11998768	2	19.5	2	100	0	78	51	0	0	48	1.00
11999492--11999516	6	4.2	6	100	0	50	52	0	0	48	1.00
12007632--12007749	39	3.0	38	81	2	128	38	16	16	27	1.91
12009617--12009656	11	3.3	12	82	10	55	65	0	2	32	1.06
12011439--12012041	245	2.5	239	79	10	652	29	10	14	44	1.79
12017963--12018002	16	2.5	16	91	0	62	42	5	20	32	1.73
12018172--12018307	60	2.2	63	89	3	206	50	0	2	47	1.19
12020596--12020671	32	2.4	33	93	6	138	19	5	7	67	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12029960--12030039	35	2.3	35	95	0	142	20	11	5	63	1.45
12030161--12030217	30	1.9	30	92	0	96	38	7	10	43	1.66
12030481--12030635	83	1.9	83	95	0	283	39	5	10	44	1.62
12034681--12034734	20	2.7	19	85	5	63	27	5	35	31	1.80
12040081--12040120	19	2.0	20	95	4	73	75	0	0	25	0.81
12040952--12041018	33	2.0	34	100	0	120	61	8	2	26	1.41
12040960--12041013	17	3.2	17	71	23	60	61	9	3	25	1.43
12040958--12041011	16	3.3	16	72	23	58	61	9	3	25	1.43
12045047--12045074	7	4.0	7	100	0	56	57	0	42	0	0.99
12048803--12048915	55	2.1	55	96	0	208	30	27	18	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193