genome.fa.s4.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  73  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23337875--23337923	19	2.7	20	78	18	61	75	4	18	2	1.06
23339419--23340030	148	4.2	147	80	8	626	42	3	9	44	1.53
23345338--23345377	21	1.9	21	100	0	80	35	7	0	57	1.27
23359582--23359652	33	2.2	33	84	5	90	36	4	18	40	1.70
23359593--23359658	33	2.0	33	88	2	98	34	4	19	40	1.72
23363320--23363367	17	2.8	17	70	0	51	50	14	18	16	1.79
23365248--23365272	13	1.9	13	100	0	50	76	8	16	0	1.02
23367456--23367580	66	1.9	66	86	0	178	14	27	17	40	1.88
23370339--23370405	34	2.0	34	93	0	116	34	11	13	40	1.81
23373713--23373890	83	2.2	82	82	6	209	24	15	14	46	1.82
23374077--23374101	10	2.5	10	100	0	50	40	0	0	60	0.97
23374532--23374607	36	2.1	36	95	0	134	27	28	10	32	1.90
23375358--23375407	16	2.9	17	74	14	50	64	6	2	28	1.28
23376085--23376235	41	3.7	41	75	11	141	22	23	10	43	1.84
23376093--23376243	82	1.8	81	86	8	216	20	22	11	45	1.84
23380169--23380217	24	2.1	23	85	11	64	14	6	14	65	1.45
23387145--23387174	14	2.2	14	94	5	53	80	0	20	0	0.72
23389845--23389906	33	1.9	33	90	3	99	35	4	19	40	1.73
23392092--23392127	2	18.0	2	100	0	72	50	0	0	50	1.00
23392640--23392690	21	2.4	21	77	6	59	31	0	1	66	1.03
23394756--23394814	29	2.0	29	83	3	73	32	6	11	49	1.66
23395583--23395627	15	3.2	13	84	15	54	35	2	0	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23395762--23395801	17	2.2	18	86	13	55	65	5	2	27	1.27
23396570--23396704	50	2.7	50	91	3	191	40	22	9	27	1.85
23396595--23396704	50	2.2	50	100	0	220	40	22	8	28	1.82
23402063--23402108	23	2.0	23	88	12	69	67	10	10	10	1.43
23408855--23408887	17	1.9	17	93	0	57	33	12	3	51	1.54
23413751--23413884	66	2.0	66	95	0	241	37	26	5	30	1.79
23420998--23421131	66	2.0	66	97	0	250	37	27	5	29	1.79
23431882--23431956	29	2.5	29	89	4	105	66	1	1	30	1.08
23431896--23431954	17	3.8	16	77	22	63	69	1	0	28	0.98
23432329--23432383	28	2.0	28	89	7	85	18	9	14	58	1.62
23432331--23432394	28	2.3	28	83	5	76	21	7	10	59	1.56
23432854--23432925	20	3.7	19	83	7	83	55	5	2	36	1.38
23432875--23432930	19	3.1	18	82	10	60	55	3	1	39	1.28
23432921--23432960	19	2.1	19	90	9	64	50	0	0	50	1.00
23435282--23435336	28	2.0	27	82	3	65	43	1	3	50	1.30
23451479--23451517	12	3.2	12	81	0	51	66	0	33	0	0.92
23454557--23454612	24	2.4	23	88	8	87	69	3	7	19	1.27
23454566--23454612	24	2.0	24	100	0	94	74	4	4	17	1.14
23454930--23454987	19	3.0	19	70	10	55	43	0	1	55	1.10
23457952--23458001	17	2.9	17	78	0	55	48	6	20	26	1.72
23469994--23470048	9	5.8	9	75	12	56	69	1	27	1	1.09
23469995--23470050	21	2.6	22	83	10	64	67	1	28	1	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23470575--23470605	13	2.4	13	94	0	53	38	3	32	25	1.72
23472641--23472705	24	2.7	24	95	4	114	32	10	6	50	1.62
23491539--23491583	21	2.1	22	83	4	56	55	4	37	2	1.32
23523423--23523461	20	1.9	20	84	5	51	76	2	17	2	1.01
23523481--23523524	20	2.1	21	87	4	63	61	4	25	9	1.45
23526795--23526832	18	2.2	18	85	4	51	39	5	18	36	1.73
23534246--23534289	11	3.8	11	82	8	52	0	22	0	77	0.77
23534249--23534284	13	2.9	13	92	8	58	0	25	0	75	0.81
23536341--23536370	14	2.2	14	94	5	53	36	10	23	30	1.87
23537059--23537092	7	4.9	7	100	0	68	11	29	0	58	1.33
23543284--23543312	14	2.1	14	93	6	51	0	6	10	82	0.83
23544744--23544781	3	12.7	3	88	0	58	34	36	0	28	1.58
23545290--23545497	52	4.1	51	67	12	133	41	2	9	46	1.49
23545187--23545687	142	3.5	141	83	10	620	42	2	9	44	1.53
23545187--23545698	145	3.5	142	79	9	541	42	2	9	44	1.52
23546259--23546312	26	2.0	27	82	10	67	25	5	1	66	1.23
23549196--23549230	2	17.5	2	100	0	70	48	0	0	51	1.00
23552273--23552321	24	2.0	24	96	0	89	16	22	0	61	1.34
23558675--23558795	42	2.9	42	97	0	224	42	14	18	24	1.88
23564423--23564447	10	2.5	10	100	0	50	40	16	0	44	1.47
23566088--23566136	21	2.4	20	80	10	55	22	20	34	22	1.97
23567669--23567706	19	2.0	20	89	5	60	52	7	0	39	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23569585--23569617	3	11.0	3	93	0	57	3	0	30	66	1.06
23570190--23570217	3	9.3	3	100	0	56	67	0	0	32	0.91
23575123--23575164	18	2.3	18	88	8	59	54	0	0	45	0.99
23576954--23577136	94	1.9	95	86	5	262	29	8	4	57	1.47
23578155--23578223	32	2.2	32	83	0	84	33	13	7	46	1.70
23581466--23581514	13	3.6	14	76	15	50	75	0	22	2	0.90
23581465--23581511	18	2.6	17	81	15	51	76	0	21	2	0.89
23581480--23581605	61	2.0	65	86	9	179	58	9	20	11	1.60
23582429--23582467	10	3.6	10	81	18	51	84	0	12	2	0.72
23583550--23584279	49	15.0	49	72	7	511	36	17	25	20	1.94
23583504--23584325	98	8.4	98	84	2	994	36	18	25	19	1.94
23589139--23589192	28	1.9	28	96	0	99	50	11	9	29	1.69
23590890--23591421	96	5.5	97	87	1	748	32	9	13	44	1.75
23590910--23591421	193	2.7	193	95	0	900	32	9	12	44	1.75
23594449--23594506	20	2.8	19	78	19	55	63	0	6	29	1.20
23594594--23594643	23	2.2	23	82	7	57	40	4	2	54	1.31
23594995--23595043	21	2.5	19	81	15	64	69	2	0	28	1.00
23601148--23601186	18	2.1	19	86	13	55	58	2	0	38	1.12
23605501--23605985	248	2.0	247	92	0	799	21	22	15	40	1.90
23606903--23606939	18	2.0	19	89	5	58	62	0	5	32	1.18
23615304--23615359	29	1.9	29	85	7	78	39	0	1	58	1.08
23617055--23617102	3	16.3	3	86	4	53	58	6	35	0	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23621401--23621433	18	1.9	18	88	11	52	39	0	9	51	1.34
23641485--23641537	23	2.4	22	74	22	56	15	3	5	75	1.13
23646190--23646327	67	2.1	67	90	0	213	34	10	11	43	1.75
23651469--23651495	4	6.8	4	100	0	54	22	0	0	77	0.76
23654051--23654091	22	2.0	21	90	9	66	58	2	2	36	1.24
23654773--23654800	3	9.3	3	100	0	56	32	0	0	67	0.91
23656381--23656457	28	2.8	28	82	11	79	33	29	12	23	1.92
23656413--23656506	28	3.4	26	71	21	66	36	21	15	26	1.94
23656882--23656926	21	2.1	21	84	8	56	2	42	6	48	1.41
23671167--23671244	35	2.2	35	88	4	113	28	12	15	43	1.83
23677643--23677708	32	2.1	32	88	0	96	25	13	13	46	1.80
23679255--23679280	12	2.2	12	100	0	52	15	23	15	46	1.83
23685163--23685220	25	2.3	25	84	3	71	18	12	8	60	1.57
23687344--23687406	29	2.1	31	85	5	85	49	6	4	39	1.49
23687637--23687674	12	3.2	12	85	7	51	34	0	0	65	0.93
23690777--23690830	21	2.5	21	80	19	67	50	20	0	29	1.49
23697674--23697733	31	1.9	31	86	0	84	16	20	15	48	1.81
23701324--23701482	72	2.2	72	82	5	187	23	26	19	30	1.98
23704927--23704978	21	2.5	20	84	9	68	40	7	0	51	1.30
23704943--23704982	21	1.9	21	100	0	80	37	5	0	57	1.21
23714063--23714114	23	2.3	23	100	0	104	23	19	28	28	1.98
23714114--23714146	17	1.9	17	88	11	50	24	15	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23720464--23720508	21	2.1	22	91	4	74	31	13	15	40	1.86
23729427--23729459	18	1.9	17	88	11	50	42	33	6	18	1.75
23734016--23734179	81	2.0	81	91	0	265	38	14	10	37	1.80
23734755--23734792	19	2.0	19	89	0	58	36	23	18	21	1.95
23737474--23737613	72	1.9	72	89	0	217	25	25	20	28	1.99
23737486--23737630	72	2.0	72	87	0	209	24	26	20	29	1.99
23740112--23740164	27	2.0	27	92	0	88	54	16	9	18	1.69
23740560--23740602	12	3.7	11	81	9	50	39	4	0	55	1.20
23741356--23741390	18	1.9	18	94	0	61	65	0	2	31	1.07
23741305--23741381	37	2.0	37	85	14	104	53	1	2	42	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193