genome.fa.s4.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  131  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41388829--41388871	3	14.0	3	80	4	50	60	2	6	30	1.35
41388882--41388919	16	2.5	15	84	16	51	57	0	0	42	0.98
41390059--41390340	30	9.5	31	76	12	143	35	23	4	35	1.77
41390092--41390375	29	9.7	29	80	8	274	36	24	4	34	1.76
41390092--41390378	59	4.9	59	82	6	262	36	24	4	34	1.77
41390092--41390375	30	9.6	30	81	4	292	36	24	4	34	1.76
41402474--41402525	21	2.5	21	84	6	70	15	11	44	28	1.81
41402847--41402884	14	2.5	16	83	8	53	21	10	26	42	1.85
41412773--41412866	47	2.0	47	95	0	170	32	9	15	41	1.80
41421655--41421729	24	3.1	24	88	0	114	56	8	10	25	1.61
41423942--41424139	79	2.5	79	89	0	288	20	19	25	34	1.96
41427095--41427153	24	2.5	24	85	0	82	49	10	11	28	1.72
41432853--41433095	52	4.7	52	89	1	355	34	25	13	25	1.93
41437710--41437764	24	2.3	24	87	0	74	29	12	9	49	1.72
41440742--41440925	79	2.3	79	88	1	271	35	27	18	18	1.94
41441468--41441520	2	26.5	2	100	0	106	50	0	0	49	1.00
41443177--41443244	24	2.8	24	75	2	73	27	11	8	51	1.68
41446531--41446568	2	19.0	2	100	0	76	50	0	0	50	1.00
41481189--41481236	25	1.9	25	83	8	62	43	8	0	47	1.33
41490668--41490949	38	7.3	38	76	7	246	27	19	22	30	1.98
41490686--41491083	78	5.2	77	76	11	401	27	17	22	32	1.96
41490883--41491018	69	2.0	69	89	0	209	28	18	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41490966--41491083	40	3.1	38	75	9	121	27	16	21	35	1.94
41492297--41492490	78	2.5	78	88	1	300	27	18	22	31	1.97
41492297--41492490	40	5.0	38	76	6	183	27	18	22	31	1.97
41514288--41514340	17	3.1	17	83	0	61	49	11	18	20	1.78
41524533--41524658	61	2.1	61	98	0	243	20	31	15	31	1.94
41526917--41526955	19	2.0	20	90	10	62	76	0	0	23	0.78
41534728--41534775	21	2.3	21	89	7	71	2	33	0	64	1.05
41536300--41536326	13	2.1	13	100	0	54	44	7	40	7	1.60
41542996--41543042	23	2.0	23	95	0	85	27	25	19	27	1.99
41546559--41546587	13	2.1	14	93	6	51	82	3	6	6	0.93
41546749--41546835	6	14.2	6	75	13	61	71	0	4	24	1.05
41546748--41546824	29	2.6	28	80	16	75	70	0	5	24	1.08
41546779--41546835	11	5.4	11	78	16	66	71	0	7	21	1.08
41546804--41546862	20	3.1	19	81	18	70	66	0	6	27	1.17
41553366--41553419	23	2.3	23	96	0	99	22	25	22	29	1.99
41553805--41553868	27	2.3	28	79	17	71	26	12	26	34	1.92
41554039--41554150	58	1.9	58	96	0	206	44	25	13	16	1.84
41558674--41558816	72	2.0	72	95	0	259	31	16	19	32	1.94
41564985--41565052	21	3.2	20	81	8	73	22	30	25	22	1.99
41576230--41576312	21	4.0	21	78	12	107	22	25	22	28	1.99
41578676--41579483	50	16.1	50	73	9	506	35	15	30	18	1.92
41578720--41579417	151	4.6	152	83	3	792	35	15	30	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41578678--41579435	101	7.6	100	73	8	457	35	15	30	18	1.92
41579749--41579831	41	2.0	42	85	2	114	31	15	20	32	1.94
41579947--41580341	172	2.3	171	89	2	605	38	16	22	21	1.93
41580260--41580428	85	2.0	85	82	2	205	36	17	23	23	1.94
41580135--41581157	208	4.9	209	82	3	1213	36	17	22	23	1.95
41580135--41581157	417	2.5	417	85	3	1330	36	17	22	23	1.95
41581016--41581329	172	1.8	172	88	2	488	36	16	21	24	1.94
41580760--41581551	381	2.1	380	87	3	1128	37	17	22	23	1.94
41581525--41581621	37	2.6	37	83	6	126	36	15	20	27	1.93
41581143--41581584	209	2.1	209	86	2	602	37	16	22	23	1.93
41581598--41581719	49	2.5	49	89	2	183	38	13	22	25	1.90
41583545--41583743	29	6.8	29	73	11	129	35	29	6	29	1.81
41583804--41583846	15	2.7	15	82	7	50	16	9	2	72	1.21
41583973--41584160	97	1.9	97	89	2	288	25	19	15	39	1.91
41591132--41591192	31	2.0	31	90	0	95	57	6	13	22	1.59
41591216--41591266	11	4.5	12	86	11	56	80	1	0	17	0.81
41591218--41591265	14	3.3	15	82	8	55	81	2	0	16	0.79
41592934--41592991	25	2.2	27	75	9	66	58	13	3	24	1.51
41593994--41594306	156	2.0	156	100	0	626	37	17	15	29	1.91
41608417--41608446	12	2.5	12	94	0	51	26	36	20	16	1.93
41614272--41614296	13	1.9	13	100	0	50	24	32	40	4	1.73
41616494--41616526	12	2.6	13	85	4	50	69	12	3	15	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41631583--41631644	19	3.4	17	75	20	63	6	17	0	75	1.00
41631591--41631647	17	2.9	21	77	20	77	7	17	0	75	1.02
41632582--41632620	6	6.3	6	84	3	51	79	2	2	15	0.95
41633937--41633981	10	4.4	10	80	5	54	82	0	17	0	0.68
41633941--41633980	21	1.9	21	89	0	62	80	0	20	0	0.72
41634418--41634492	35	2.1	36	95	2	134	36	2	28	33	1.71
41636081--41636142	5	12.0	5	80	13	56	24	1	0	74	0.91
41636072--41636154	23	3.5	23	76	16	89	22	2	1	73	1.02
41636073--41636139	13	5.6	13	72	15	56	23	1	0	74	0.90
41636133--41636163	16	2.0	16	93	6	55	19	6	6	67	1.35
41636137--41636170	16	2.2	16	89	5	52	14	5	8	70	1.31
41642819--41642875	17	3.3	17	85	4	78	31	1	8	57	1.39
41642843--41642896	23	2.3	23	87	0	72	40	1	3	53	1.29
41644513--41644884	59	6.3	60	86	7	396	34	26	3	35	1.73
41644513--41644884	29	12.6	30	71	20	241	34	26	3	35	1.73
41644871--41644939	28	2.5	28	78	2	68	33	27	7	31	1.84
41650151--41650200	17	2.9	17	81	3	64	82	0	14	4	0.82
41650167--41650203	19	1.9	19	94	0	65	81	0	13	5	0.86
41651226--41651950	98	7.4	98	92	0	1101	36	18	27	17	1.93
41652286--41652376	39	2.3	39	88	0	128	24	28	18	28	1.98
41652531--41652687	85	1.8	85	84	4	217	33	15	26	25	1.95
41652531--41652698	86	2.0	85	83	3	212	35	14	25	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41654902--41655268	29	12.5	29	70	17	224	34	23	4	37	1.76
41654893--41655268	117	3.2	117	79	6	327	34	24	4	36	1.77
41654902--41655286	59	6.6	59	78	5	309	34	24	5	36	1.78
41669886--41669922	2	18.5	2	100	0	74	48	0	0	51	1.00
41670325--41670414	30	3.0	30	72	3	90	41	6	18	33	1.77
41671383--41671419	19	1.9	19	88	0	56	29	5	0	64	1.15
41671395--41671424	15	2.0	15	93	0	51	33	3	0	63	1.11
41672497--41672594	37	2.7	38	88	6	157	24	19	18	37	1.94
41672440--41672672	122	1.9	122	87	1	342	24	20	16	39	1.92
41672534--41672813	85	3.3	85	81	4	323	26	21	15	36	1.93
41672704--41673049	161	2.2	160	84	0	440	25	21	16	36	1.94
41674142--41674555	206	2.0	206	95	0	747	22	19	18	38	1.93
41686235--41686305	35	2.0	35	100	0	142	36	14	8	40	1.76
41686839--41687069	30	7.8	30	79	7	125	37	0	25	36	1.62
41686868--41687121	30	8.4	30	80	4	244	37	2	24	35	1.69
41686833--41687121	60	4.8	58	80	5	229	37	2	25	35	1.69
41691964--41692047	20	4.2	20	69	11	64	25	8	28	38	1.85
41692754--41692802	23	2.1	23	84	0	62	30	20	22	26	1.98
41700080--41700118	17	2.3	17	86	0	51	15	15	25	43	1.86
41711840--41711868	2	14.5	2	100	0	58	48	0	0	51	1.00
41715417--41715455	17	2.3	17	86	0	51	15	10	25	48	1.76
41716289--41716326	18	2.2	17	90	4	58	60	2	0	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41718651--41718688	18	2.2	17	90	4	58	60	2	0	36	1.11
41720995--41721032	18	2.2	17	90	4	58	57	2	0	39	1.12
41723410--41723446	17	2.2	18	90	9	60	59	2	0	37	1.12
41723410--41723446	16	2.2	18	85	9	51	59	2	0	37	1.12
41726258--41726294	17	2.2	18	90	9	60	59	2	0	37	1.12
41726258--41726294	16	2.2	18	85	9	51	59	2	0	37	1.12
41737302--41737338	16	2.2	18	85	9	51	56	2	2	37	1.28
41742984--41743026	18	2.4	18	84	3	52	58	4	2	34	1.32
41745181--41745220	11	3.8	10	90	3	53	0	15	0	85	0.61
41745181--41745216	16	2.2	16	90	0	54	0	16	0	83	0.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193