genome.fa.s4.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  145  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45260064--45260088	12	2.1	12	100	0	50	84	8	0	8	0.79
45261869--45262316	49	9.1	49	71	8	309	36	17	25	19	1.94
45261868--45262388	98	5.3	98	82	4	591	37	17	25	19	1.93
45261868--45262388	197	2.6	196	86	1	702	37	17	25	19	1.93
45263476--45263525	18	2.7	19	81	9	68	16	36	18	30	1.92
45283018--45283097	42	1.9	42	85	10	110	33	1	16	48	1.54
45284349--45284374	12	2.2	12	100	0	52	84	0	0	15	0.62
45284887--45284932	11	3.9	12	75	13	51	32	0	0	67	0.91
45295305--45295338	16	2.1	16	88	5	50	58	0	0	41	0.98
45305319--45305361	22	2.0	22	81	9	52	53	2	11	32	1.50
45307513--45308098	58	10.0	59	86	4	738	35	3	29	32	1.73
45307549--45308098	117	4.7	119	88	3	758	35	2	29	32	1.71
45309761--45309818	28	2.2	26	85	11	75	22	10	25	41	1.85
45309872--45309930	6	9.8	6	73	14	50	54	1	5	38	1.33
45309888--45309914	14	1.9	14	100	0	54	51	0	11	37	1.37
45310240--45310288	24	2.0	24	88	0	71	20	32	12	34	1.90
45312965--45313035	27	2.6	28	71	20	69	35	0	0	64	0.94
45312965--45313042	28	2.9	27	73	19	72	35	0	0	64	0.94
45321510--45321538	2	14.5	2	100	0	58	0	48	0	51	1.00
45327617--45327653	18	2.1	18	94	0	65	43	8	0	48	1.32
45332164--45332250	12	7.3	12	88	2	113	72	19	2	5	1.16
45332178--45332244	3	22.3	3	76	0	53	73	20	1	4	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45332243--45332316	20	3.5	20	70	13	58	64	22	5	6	1.38
45332266--45332296	12	2.6	12	100	0	62	67	32	0	0	0.91
45332140--45332317	44	3.9	43	73	11	142	67	20	4	7	1.32
45332175--45332296	24	5.3	24	73	9	92	69	22	2	5	1.21
45335326--45335363	3	12.7	3	100	0	76	34	0	0	65	0.93
45335818--45335887	6	12.0	6	72	11	56	42	0	2	54	1.15
45335812--45335893	18	4.4	18	73	13	76	41	0	2	56	1.13
45335817--45335866	16	3.1	16	82	8	57	38	0	2	60	1.09
45343796--45344012	23	9.4	22	82	9	195	11	23	21	42	1.86
45343817--45344012	46	4.2	46	86	6	238	12	22	21	43	1.86
45343797--45344012	69	3.1	69	86	7	262	12	23	21	43	1.86
45351214--45351430	23	9.4	22	82	9	195	11	23	21	42	1.86
45351235--45351430	46	4.2	46	86	6	238	12	22	21	43	1.86
45351215--45351430	69	3.1	69	86	7	262	12	23	21	43	1.86
45360509--45360903	206	1.9	204	81	3	470	37	20	20	22	1.94
45361072--45361113	18	2.3	18	95	0	75	33	19	35	11	1.88
45361253--45361321	6	11.8	6	70	6	52	42	0	4	53	1.20
45361247--45361321	18	4.0	18	75	14	71	41	0	4	54	1.19
45361271--45361321	22	2.2	22	86	6	66	43	0	5	50	1.26
45364993--45365017	1	25.0	1	100	0	50	0	100	0	0	0.00
45374795--45374833	15	2.6	15	79	0	51	2	53	0	43	1.14
45377799--45377837	15	2.6	15	79	0	51	2	53	0	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45379343--45379414	35	2.1	35	91	0	117	41	12	22	23	1.88
45381348--45381378	16	1.9	16	93	0	53	45	0	6	48	1.28
45381492--45381541	20	2.5	20	78	15	59	62	2	0	36	1.07
45381498--45381540	19	2.3	19	88	8	61	62	2	0	34	1.08
45381486--45381585	41	2.5	41	78	13	102	60	2	0	38	1.09
45382407--45382493	45	1.9	45	81	4	104	45	0	9	44	1.35
45390736--45390828	46	2.0	46	97	0	177	41	9	8	39	1.69
45404696--45404752	24	2.5	23	88	5	80	26	12	19	42	1.86
45404807--45404847	21	2.0	22	90	9	68	29	2	24	43	1.67
45405623--45405666	18	2.4	18	88	0	70	29	4	36	29	1.77
45407370--45407438	31	2.3	31	82	12	81	65	0	0	34	0.93
45407383--45407448	17	4.1	17	68	31	63	63	0	0	36	0.95
45407384--45407468	16	5.5	15	71	27	54	67	0	0	32	0.91
45407397--45407464	18	3.8	18	71	11	68	67	0	0	32	0.91
45407575--45407612	18	2.1	19	90	5	60	42	2	23	31	1.68
45407625--45407658	11	2.9	12	86	8	52	55	0	23	20	1.43
45407625--45407671	11	4.3	11	83	5	51	55	0	25	19	1.43
45407690--45407720	2	15.5	2	100	0	62	48	0	0	51	1.00
45407815--45407893	32	2.5	31	82	13	83	25	27	22	24	2.00
45408379--45408450	29	2.4	30	76	15	78	34	2	1	61	1.19
45427671--45427716	20	2.2	21	92	3	76	39	26	15	19	1.91
45438791--45438840	19	2.6	19	81	6	57	36	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45441238--45441287	21	2.4	21	82	0	55	44	16	14	26	1.85
45441249--45441288	21	1.9	21	89	0	62	42	15	17	25	1.88
45444637--45444691	26	2.2	25	87	9	76	18	3	0	78	0.90
45444631--45444690	4	14.8	4	80	16	70	18	3	0	78	0.89
45446102--45446130	5	5.8	5	100	0	58	17	0	0	82	0.66
45446152--45446196	19	2.4	19	81	7	56	37	0	4	57	1.19
45452031--45452071	14	2.7	16	77	14	50	46	21	4	26	1.72
45461166--45461561	61	6.6	59	79	7	395	39	15	16	27	1.89
45461166--45461561	179	2.2	182	83	4	473	39	15	16	27	1.89
45461586--45461699	59	1.9	59	85	7	151	42	13	17	27	1.86
45462556--45462865	157	2.0	153	94	2	548	45	10	13	30	1.77
45462984--45463066	41	2.0	40	93	2	139	40	10	0	48	1.38
45462991--45463058	20	3.3	20	68	11	66	41	10	0	48	1.37
45464042--45464083	20	2.1	20	86	8	59	52	7	0	40	1.29
45464903--45464936	15	2.2	16	89	5	52	38	0	0	61	0.96
45470384--45470439	30	1.9	28	85	7	76	25	17	5	51	1.66
45471115--45471168	28	1.9	28	84	0	72	64	9	1	24	1.32
45471547--45471595	19	2.5	20	80	6	64	67	4	0	28	1.09
45492280--45492335	29	1.9	29	85	7	78	26	10	8	53	1.65
45494740--45494786	24	2.0	24	86	0	67	31	6	4	57	1.43
45497188--45497239	25	2.1	24	82	10	61	38	0	1	59	1.08
45497663--45497707	19	2.4	19	80	0	54	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45498246--45498301	29	2.0	29	85	3	78	30	16	10	42	1.82
45506255--45506290	18	2.0	18	100	0	72	5	16	27	50	1.68
45507193--45507254	29	2.2	28	82	5	72	24	8	6	61	1.48
45514610--45514812	61	3.3	61	63	16	159	31	15	2	50	1.59
45514589--45514860	121	2.2	121	94	1	465	28	17	5	48	1.68
45517527--45517963	49	8.8	50	73	7	306	38	18	25	17	1.92
45517525--45517703	99	1.8	99	86	0	259	37	16	27	18	1.92
45517527--45517823	148	2.0	149	84	2	391	38	17	25	18	1.92
45520159--45520352	61	3.2	61	62	20	152	30	15	3	49	1.62
45520130--45520401	121	2.2	121	93	1	456	28	18	5	48	1.69
45523130--45523565	49	8.8	50	74	9	333	37	17	25	18	1.93
45523128--45523325	99	2.0	98	82	4	238	36	16	27	19	1.93
45523130--45523426	148	2.0	149	86	3	420	38	16	26	19	1.92
45525238--45525271	15	2.3	15	90	10	52	17	8	2	70	1.25
45525487--45525712	112	2.0	113	93	0	391	28	15	4	50	1.64
45528455--45528515	3	20.3	3	100	0	122	67	0	32	0	0.91
45533967--45534015	22	2.2	22	78	7	55	8	4	14	73	1.21
45534038--45534099	23	2.7	23	82	5	63	4	4	20	69	1.26
45534038--45534162	12	10.9	12	70	10	73	7	3	20	69	1.26
45534058--45534091	17	2.0	17	88	0	50	5	0	17	76	0.98
45534048--45534162	23	5.0	23	75	15	87	7	2	19	70	1.24
45534280--45534368	27	3.5	26	73	13	87	31	0	5	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45539423--45539506	30	2.8	29	82	5	80	40	22	4	32	1.75
45539453--45539644	58	3.3	57	82	7	210	34	30	2	32	1.72
45539483--45539586	28	3.6	29	69	22	85	33	29	0	35	1.64
45539511--45539615	29	3.6	30	73	16	105	34	29	1	34	1.69
45539452--45539644	29	6.7	29	67	14	103	34	30	2	32	1.72
45539482--45539668	58	3.2	57	81	8	209	33	29	1	34	1.68
45539452--45539668	116	1.9	115	81	9	262	35	29	2	33	1.70
45539452--45539668	29	7.5	28	66	16	102	35	29	2	33	1.70
45545342--45545416	24	3.1	24	94	0	123	25	12	8	54	1.64
45546295--45546349	13	4.2	13	75	11	58	45	0	14	40	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193