genome.fa.s4.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  46  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13958206--13958367	30	5.4	29	83	8	184	40	22	1	35	1.62
13958206--13958367	60	2.7	60	85	4	204	40	22	1	35	1.62
13963238--13963267	9	3.4	9	95	4	53	80	0	20	0	0.72
13963236--13963303	9	8.4	8	74	9	50	76	1	20	1	0.94
13963252--13963304	23	2.4	23	84	12	67	73	1	20	3	1.08
13964247--13964830	50	11.9	49	78	3	480	31	16	32	19	1.94
13964288--13964773	99	5.0	98	79	4	374	31	16	32	19	1.94
13964456--13964826	197	1.9	195	87	4	541	31	17	31	18	1.95
13965115--13965854	39	18.7	39	70	12	384	22	30	21	25	1.99
13965234--13965595	116	3.1	114	75	5	375	23	31	19	25	1.98
13965112--13965716	155	3.9	152	81	5	694	23	30	20	25	1.98
13965639--13965807	91	1.9	89	88	2	257	22	30	23	23	1.99
13965954--13966124	85	2.0	84	81	1	198	36	15	22	25	1.93
13967954--13968115	30	5.4	30	88	4	229	38	22	3	35	1.72
13967954--13968115	59	2.7	59	86	6	220	38	22	3	35	1.72
13981202--13981242	21	2.0	21	90	0	64	7	24	2	65	1.30
13981824--13981867	18	2.5	18	88	3	63	59	11	11	18	1.61
13981970--13982007	18	2.1	19	85	5	51	2	23	7	65	1.32
13982299--13982335	19	2.0	19	85	15	51	5	37	8	48	1.56
13988463--13988512	18	2.8	18	75	0	55	18	12	24	46	1.82
13992547--13992606	18	3.4	17	79	9	50	55	15	11	18	1.70
13992575--13992610	18	2.1	18	89	5	56	58	11	13	16	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14012137--14012167	14	2.2	14	94	0	53	77	6	3	12	1.08
14027755--14027821	31	2.2	31	97	0	125	23	22	10	43	1.84
14027755--14027844	31	2.9	31	86	4	112	23	21	11	44	1.84
14029244--14030357	371	3.0	371	96	0	2034	29	15	15	39	1.88
14041371--14041397	8	3.4	8	100	0	54	25	11	11	51	1.70
14044914--14045059	48	3.1	48	70	9	136	36	19	17	26	1.94
14044865--14045547	98	6.9	100	75	8	553	37	18	16	27	1.92
14044865--14045515	196	3.3	196	87	0	926	37	18	16	27	1.92
14057269--14057329	22	2.8	22	76	0	68	36	9	14	39	1.80
14071685--14071730	20	2.3	20	85	7	58	10	4	15	69	1.32
14071696--14071735	20	2.0	20	90	5	62	15	7	10	67	1.41
14072987--14073045	17	3.5	17	100	0	118	32	23	18	25	1.97
14076131--14076483	53	6.7	53	86	2	480	27	14	22	34	1.94
14090526--14090578	24	2.3	23	81	12	63	50	9	22	16	1.74
14094274--14094336	24	2.7	24	80	4	76	46	6	22	25	1.75
14103172--14103303	58	2.3	58	88	2	194	49	15	0	34	1.46
14103345--14103394	24	2.1	24	88	0	73	46	24	10	20	1.81
14103799--14103883	34	2.5	34	88	1	118	38	12	9	38	1.76
14110084--14110143	28	2.1	28	100	0	120	30	13	13	43	1.82
14113604--14113637	7	4.9	7	100	0	68	14	0	0	85	0.60
14119953--14119989	19	1.9	19	88	0	56	21	18	21	37	1.94
14119949--14120013	26	2.5	26	87	0	94	20	21	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14119979--14120037	19	3.1	19	80	0	55	16	16	25	40	1.90
14122395--14122441	3	15.7	3	100	0	94	68	0	0	31	0.90
14125883--14125937	24	2.3	23	90	6	83	25	20	23	30	1.98
14129030--14129085	14	4.3	13	78	13	62	21	16	23	39	1.92
14129030--14129085	26	2.2	26	90	0	85	21	16	23	39	1.92
14129077--14129121	19	2.4	19	80	0	54	26	20	15	37	1.92
14132897--14133265	195	1.9	192	83	3	481	26	26	17	29	1.97
14135539--14135591	22	2.4	22	78	6	54	30	20	15	33	1.93
14141054--14141170	61	1.9	61	92	0	198	51	5	1	41	1.36
14142744--14142860	62	1.9	59	87	5	171	51	4	2	41	1.35
14146004--14146036	2	16.5	2	100	0	66	51	0	0	48	1.00
14146442--14146578	46	3.0	46	80	8	154	31	8	13	47	1.71
14150125--14150274	56	2.7	56	85	6	214	34	7	13	45	1.71
14152520--14152573	28	1.9	28	100	0	108	46	11	11	31	1.74
14154166--14154193	6	4.7	6	100	0	56	14	17	0	67	1.22
14173190--14173295	39	2.7	39	86	0	131	29	25	12	33	1.92
14182846--14182930	19	4.6	19	70	2	66	31	32	0	35	1.58
14182846--14182931	38	2.3	38	93	2	147	31	32	0	36	1.58
14191965--14192027	31	2.0	31	100	0	126	50	11	12	25	1.73
14192991--14193076	29	3.0	30	83	6	115	24	4	32	38	1.76
14193101--14193208	30	3.6	30	82	5	128	36	1	27	34	1.68
14193087--14193201	60	1.9	59	85	1	158	34	1	27	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14193107--14193225	30	4.0	29	81	6	121	37	1	26	33	1.67
14193101--14193223	60	2.0	60	82	3	149	35	2	29	32	1.71
14195753--14196442	78	8.8	78	79	1	598	24	18	31	25	1.98
14195592--14196442	156	5.5	156	75	4	579	24	18	31	25	1.98
14195594--14196403	39	20.8	39	71	4	425	24	18	31	25	1.98
14205097--14205159	29	2.1	30	82	8	76	31	3	28	36	1.73
14205144--14205209	29	2.3	28	84	2	87	34	3	28	33	1.73
14205155--14205218	28	2.2	29	86	2	85	35	3	18	42	1.66
14205196--14205330	30	4.6	29	79	6	130	40	2	21	34	1.68
14205167--14205342	58	3.0	58	75	10	162	39	2	22	35	1.67
14205196--14205350	30	5.3	29	78	9	120	39	3	23	34	1.71
14206199--14206234	17	2.1	17	89	0	54	16	0	2	80	0.83
14208544--14208600	24	2.4	24	90	0	87	24	14	8	52	1.69
14209919--14209951	18	1.9	18	88	11	52	30	3	18	48	1.63
14209995--14210101	37	2.9	37	88	2	144	13	21	28	37	1.91
14218597--14218773	39	4.5	39	79	4	167	36	22	17	23	1.94
14218589--14218773	79	2.3	79	76	3	185	36	22	17	23	1.95
14225939--14225988	18	2.8	18	81	0	73	48	0	2	50	1.12
14225964--14226127	18	8.8	18	66	20	70	42	1	3	51	1.30
14226064--14226127	8	7.8	8	74	22	53	43	0	1	54	1.09
14226149--14226215	33	2.1	33	97	2	127	43	5	8	41	1.60
14227087--14227244	66	2.4	66	94	0	280	40	18	26	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14227232--14227303	21	3.4	21	81	11	85	33	20	43	2	1.67
14227511--14227543	15	2.2	15	100	0	66	21	0	30	48	1.50
14234072--14234141	36	1.9	36	100	0	140	41	25	8	24	1.83
14250594--14250656	24	2.4	28	74	17	71	42	1	1	53	1.19
14255235--14255309	22	3.5	22	80	8	91	17	12	32	38	1.86
14258025--14258062	14	2.9	13	81	11	51	28	0	2	68	1.03
14268120--14268213	26	3.6	25	73	20	86	63	8	5	22	1.42
14268396--14268509	58	1.9	59	85	5	160	17	1	22	57	1.49
14268418--14268509	29	3.2	28	74	7	85	18	1	21	58	1.45
14273916--14273956	9	4.4	9	84	6	55	0	34	0	65	0.93
14279297--14279438	50	2.8	50	79	6	144	35	11	14	38	1.82
14283123--14283155	16	2.1	16	94	0	57	54	3	18	24	1.57
14283569--14283604	18	2.1	16	90	10	54	52	0	16	30	1.44
14284147--14284384	52	4.6	52	91	0	377	25	14	23	36	1.93
14288219--14288248	12	2.6	12	94	5	53	13	0	33	53	1.40
14306158--14306218	3	20.3	3	81	0	50	19	1	11	67	1.30
14306157--14306218	6	9.8	6	81	10	61	19	1	12	66	1.33
14306349--14306390	3	14.0	3	100	0	84	33	0	0	66	0.92
14306203--14306519	172	1.8	172	95	1	582	35	8	16	39	1.80
14307083--14307269	19	9.8	19	82	2	214	23	18	33	24	1.97
14309682--14309721	21	1.9	21	85	10	55	50	5	5	40	1.46
14312369--14312432	11	6.0	11	76	22	57	39	1	1	57	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14312394--14312436	19	2.3	19	80	8	52	34	0	2	62	1.08
14312372--14312432	30	2.0	30	90	6	97	37	1	1	59	1.17
14312682--14312715	15	2.3	15	90	5	52	79	8	5	5	1.05
14313672--14313696	13	1.9	13	100	0	50	16	0	12	72	1.13
14322402--14322472	37	1.9	37	91	0	115	38	21	18	22	1.94
14322278--14322785	161	3.1	161	90	0	739	38	18	21	21	1.94
14322676--14322843	85	2.0	85	82	4	205	37	16	22	24	1.93
14322600--14322994	209	1.9	210	89	0	612	38	17	21	22	1.93
14323047--14323117	37	1.9	37	88	0	106	40	21	18	19	1.91
14322944--14323238	113	2.6	113	93	0	482	40	19	18	21	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193