genome.fa.s4.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  132  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41750519--41750574	23	2.4	23	75	0	58	25	21	23	30	1.99
41756330--41756363	17	2.0	17	88	0	50	61	5	8	23	1.47
41767007--41767034	6	4.7	6	100	0	56	35	14	50	0	1.43
41774532--41774608	39	2.0	38	85	10	102	49	0	5	45	1.24
41776784--41776991	25	8.2	25	83	2	209	39	25	15	20	1.91
41776788--41776998	50	4.2	50	83	3	244	38	25	15	20	1.91
41776777--41776998	75	2.9	75	80	3	239	38	25	15	20	1.92
41776795--41777020	77	3.0	77	81	2	260	38	24	15	21	1.92
41776784--41777018	25	9.2	26	81	8	182	39	24	15	20	1.92
41779288--41779434	43	3.5	42	78	4	154	36	8	26	27	1.86
41779294--41779434	41	3.4	41	80	3	147	36	9	26	26	1.87
41779294--41779447	84	1.8	84	84	2	211	38	9	25	25	1.87
41779378--41779519	42	3.4	41	80	5	117	40	10	24	24	1.87
41779459--41779537	40	2.0	40	87	5	115	40	8	21	29	1.83
41780192--41780233	21	2.0	21	90	9	68	23	19	26	30	1.98
41786980--41787030	21	2.2	24	76	20	72	27	5	39	27	1.79
41786986--41787032	21	2.2	21	96	0	85	27	6	38	27	1.81
41789677--41789735	31	1.9	31	92	0	100	32	18	11	37	1.87
41790312--41790393	5	16.2	5	92	2	137	57	1	0	41	1.06
41790756--41790793	19	2.0	19	94	0	67	44	18	5	31	1.72
41801863--41801900	14	2.7	14	95	0	67	47	7	36	7	1.62
41804222--41804731	163	3.1	163	93	1	846	25	16	12	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41804834--41805053	30	7.4	30	68	20	133	32	29	4	33	1.76
41804802--41805171	118	3.1	119	86	3	473	33	27	3	35	1.73
41804802--41805199	59	6.8	60	80	7	392	32	27	4	35	1.76
41817132--41817276	76	1.9	77	94	1	256	33	15	16	35	1.90
41817145--41817612	115	4.1	115	75	12	475	34	15	17	32	1.91
41817260--41817620	76	4.8	76	92	2	572	35	15	17	31	1.92
41817896--41817983	6	15.0	6	68	17	60	39	3	0	56	1.16
41817896--41817970	11	6.9	11	76	14	75	37	4	0	58	1.17
41817919--41817976	17	3.6	17	79	13	77	37	5	0	56	1.21
41817902--41817985	31	2.8	29	82	7	105	39	3	0	57	1.16
41817896--41817982	11	8.0	11	70	22	60	39	3	0	57	1.16
41818723--41818765	18	2.6	16	81	7	50	58	2	4	34	1.32
41819049--41819079	16	1.9	16	100	0	62	19	22	19	38	1.93
41819086--41819142	9	6.4	9	77	6	55	75	0	17	7	1.02
41819088--41819137	25	2.0	26	88	4	75	74	0	18	8	1.06
41819086--41819149	26	2.4	26	79	7	76	73	0	20	6	1.04
41819573--41820083	163	3.1	163	95	0	898	25	17	13	44	1.85
41820189--41820524	30	11.3	29	67	18	149	33	27	2	37	1.70
41820154--41820565	59	7.0	58	83	4	450	32	28	3	35	1.73
41822258--41822500	53	4.6	53	88	0	333	37	20	12	28	1.90
41824139--41824178	21	1.9	21	85	10	55	47	15	0	37	1.45
41829205--41829254	12	4.0	12	89	7	73	0	14	20	66	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41829540--41829574	6	5.5	6	87	12	52	48	0	0	51	1.00
41829540--41829574	13	2.7	13	100	0	70	48	0	0	51	1.00
41829540--41829571	7	4.9	7	88	11	50	46	0	0	53	1.00
41829585--41829826	123	2.0	122	90	2	387	41	9	11	36	1.75
41836969--41836993	11	2.3	11	100	0	50	32	0	0	68	0.90
41838036--41838160	43	2.9	44	86	2	198	31	6	20	42	1.77
41842208--41842236	2	15.0	2	92	7	51	48	0	0	51	1.00
41849180--41849212	5	6.8	5	93	6	59	18	0	0	81	0.68
41849219--41849279	16	3.8	15	81	16	61	24	0	3	72	1.00
41849813--41849845	16	2.1	16	94	0	57	30	42	12	15	1.83
41850622--41850715	9	10.0	9	67	12	55	75	1	18	5	1.05
41850669--41850706	10	3.5	11	85	10	51	81	0	18	0	0.69
41853191--41853492	82	3.7	78	77	10	246	32	10	11	44	1.76
41853226--41853464	84	2.9	81	77	11	234	34	10	11	43	1.76
41855649--41855704	29	1.9	29	88	0	85	28	16	25	30	1.96
41870089--41870207	58	2.1	57	95	1	211	37	2	7	52	1.44
41879207--41879242	15	2.4	15	90	0	54	52	0	0	47	1.00
41881415--41881443	15	1.9	15	100	0	58	20	34	10	34	1.87
41882672--41882762	44	2.1	44	100	0	182	39	25	6	28	1.81
41885427--41885455	11	2.5	12	88	11	51	48	13	24	13	1.79
41887147--41887198	17	3.4	17	73	26	62	36	3	3	55	1.36
41887422--41887479	25	2.4	23	76	23	73	15	41	15	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41887431--41887485	25	2.2	25	90	6	85	20	45	10	23	1.82
41889085--41889345	59	4.4	58	79	5	197	34	22	1	40	1.65
41889085--41889334	29	8.6	28	72	13	168	34	23	2	40	1.66
41889123--41889403	59	4.8	57	79	9	227	33	22	2	41	1.69
41889188--41889424	57	4.0	60	76	12	156	33	23	3	39	1.72
41900612--41900646	18	1.9	18	88	0	52	20	11	8	60	1.57
41901040--41901524	100	4.9	99	77	9	382	38	20	25	15	1.92
41901040--41901519	49	9.7	49	73	11	334	38	20	25	15	1.92
41901148--41901531	149	2.6	149	90	0	601	37	20	25	16	1.93
41902007--41902089	6	13.8	6	69	18	57	38	3	1	56	1.24
41902007--41902088	17	4.6	18	83	10	105	37	3	1	57	1.24
41902007--41902088	37	2.3	35	87	8	112	37	3	1	57	1.24
41903974--41904289	29	10.9	28	75	12	230	34	23	1	40	1.65
41903973--41904338	89	4.2	89	80	8	303	34	24	1	39	1.65
41904267--41904426	60	2.7	60	80	13	170	33	26	3	35	1.75
41906256--41906325	36	1.9	37	91	2	115	21	5	10	62	1.47
41908183--41908743	30	18.9	29	79	10	480	38	22	1	36	1.66
41908227--41908743	119	4.4	118	83	9	553	39	22	2	36	1.66
41908227--41908772	118	4.6	116	81	10	556	38	23	2	35	1.68
41910214--41910255	17	2.4	18	80	4	50	40	0	0	59	0.97
41910432--41910463	7	4.4	7	96	4	55	75	0	0	25	0.81
41911549--41911603	27	2.1	25	80	12	58	1	18	3	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41915466--41915526	6	10.0	6	73	16	54	42	1	0	55	1.09
41915464--41915531	37	1.9	35	85	11	95	42	1	0	55	1.08
41915466--41915531	21	3.6	18	79	16	73	42	1	0	56	1.08
41915500--41915542	16	2.6	17	88	3	61	51	2	0	46	1.13
41916319--41916360	20	2.1	20	86	0	57	59	0	0	40	0.97
41917430--41917700	29	9.3	29	75	15	193	33	26	4	35	1.76
41917430--41917685	30	8.8	28	76	11	160	33	26	3	35	1.75
41917438--41917699	59	4.5	59	81	7	286	33	26	4	35	1.76
41917432--41917699	115	2.3	115	84	5	315	33	27	4	35	1.76
41922126--41922156	8	3.9	8	100	0	62	90	9	0	0	0.46
41924339--41924434	49	2.0	49	87	0	138	40	20	26	12	1.88
41924810--41926653	207	8.9	207	91	0	2896	35	18	22	23	1.96
41925460--41925627	86	2.0	85	83	3	212	36	14	23	25	1.93
41924810--41926653	616	3.0	617	91	1	2960	35	18	22	23	1.96
41924811--41926653	823	2.2	822	91	1	2997	35	18	22	23	1.96
41927005--41927037	12	2.8	12	90	4	50	36	0	3	60	1.12
41927016--41927093	6	13.0	6	71	20	56	41	2	1	55	1.22
41927016--41927075	17	3.6	16	86	6	68	36	3	1	58	1.25
41927067--41927109	17	2.6	17	85	10	54	48	2	2	46	1.27
41928937--41929169	29	8.0	28	77	12	211	39	25	3	32	1.72
41928937--41929169	30	7.9	29	78	12	217	39	25	3	32	1.72
41928937--41929169	59	4.0	56	77	13	206	39	25	3	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41931423--41931482	24	2.5	25	83	8	79	53	23	5	18	1.64
41931889--41931940	24	2.2	24	85	0	68	55	19	5	19	1.62
41931279--41932204	458	2.0	458	95	0	1683	38	17	9	34	1.82
41934938--41934990	24	2.3	23	83	3	61	35	7	20	35	1.81
41945236--41945289	18	3.1	18	78	5	56	24	11	11	53	1.68
41945236--41945289	17	3.1	17	81	2	54	24	11	11	53	1.68
41946361--41946500	43	3.3	44	87	6	198	21	30	23	24	1.99
41946814--41946967	66	2.3	66	87	0	218	15	24	16	42	1.87
41952801--41953536	69	10.8	69	68	22	300	44	1	6	47	1.39
41952719--41953143	119	3.5	119	79	9	532	44	1	7	46	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193