genome.fa.s4.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  166  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51813017--51813503	59	8.3	55	79	8	303	33	24	3	39	1.71
51813008--51813263	29	8.9	29	71	17	135	35	22	1	40	1.64
51813308--51813403	30	3.2	30	69	16	83	32	18	6	42	1.75
51813046--51813503	118	3.9	116	79	5	397	32	24	3	39	1.71
51813355--51813500	29	5.0	29	67	15	75	32	24	3	39	1.72
51815185--51815240	17	3.2	17	82	9	67	37	10	17	33	1.85
51815212--51815271	23	2.6	24	82	7	63	36	3	18	41	1.67
51815388--51815429	21	2.0	21	100	0	84	23	19	9	47	1.78
51815918--51815961	21	2.0	21	82	4	52	43	2	22	31	1.66
51817995--51818051	30	1.9	30	89	3	89	38	3	21	36	1.70
51817995--51818059	30	2.2	28	86	5	85	35	3	20	41	1.68
51818003--51818111	31	3.6	30	80	6	103	33	3	23	38	1.73
51817993--51818134	31	4.7	31	78	11	93	32	2	23	40	1.69
51818064--51818134	30	2.3	32	85	7	94	32	2	26	38	1.71
51819312--51819372	3	19.7	3	74	12	52	32	4	3	59	1.35
51820021--51820096	17	4.5	17	75	5	73	50	2	1	46	1.24
51821137--51821206	31	2.3	30	85	9	88	28	14	8	48	1.73
51822231--51822264	13	2.6	13	85	0	50	35	11	8	44	1.72
51826306--51826352	24	2.0	24	83	8	60	40	14	8	36	1.77
51827916--51828058	73	2.0	69	93	5	241	39	13	33	13	1.83
51829854--51829904	18	2.7	18	72	19	50	41	3	0	54	1.19
51837717--51837791	36	2.1	36	97	0	141	18	9	24	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51845362--51845387	6	4.3	6	100	0	52	34	50	15	0	1.45
51845783--51845810	13	2.2	13	100	0	56	67	0	0	32	0.91
51845775--51845811	17	2.1	19	90	10	60	67	0	0	32	0.91
51845804--51845831	11	2.5	11	100	0	56	60	0	0	39	0.97
51846009--51846035	14	1.9	14	100	0	54	74	3	0	22	0.98
51846007--51846040	16	2.1	16	88	0	50	76	5	0	17	0.98
51846930--51847102	91	1.9	90	85	3	240	35	23	7	33	1.83
51846945--51847095	61	2.5	60	83	4	196	36	22	5	35	1.77
51846929--51847095	30	5.5	30	80	5	169	35	22	6	35	1.81
51850718--51850756	13	3.0	13	88	7	53	82	0	17	0	0.68
51851585--51851645	17	3.5	15	76	24	50	80	0	13	6	0.90
51851627--51851669	11	3.7	12	82	11	54	79	9	11	0	0.95
51852607--51852915	50	6.2	50	75	7	234	35	17	31	16	1.92
51852626--51852896	99	2.7	99	80	4	260	36	16	31	16	1.91
51853188--51853331	39	3.7	38	69	14	123	23	28	20	27	1.99
51853186--51853373	78	2.4	78	81	0	223	23	27	20	28	1.99
51853435--51854000	204	2.7	208	88	4	836	36	18	23	21	1.95
51853814--51854162	161	2.1	163	84	3	436	37	19	21	21	1.95
51853610--51854370	373	2.1	365	86	4	1035	37	19	22	21	1.94
51853978--51854545	209	2.7	207	85	4	809	38	18	21	21	1.93
51854461--51854629	84	2.0	84	92	0	284	43	18	18	19	1.88
51855804--51855844	11	3.7	11	90	0	64	60	0	0	39	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51855790--51855823	15	2.2	16	85	15	54	61	0	0	38	0.96
51855796--51855835	15	2.7	15	92	0	62	60	0	0	40	0.97
51855790--51855844	26	2.1	26	83	6	67	61	0	0	38	0.96
51856852--51857234	29	13.1	30	77	11	275	37	23	4	35	1.74
51856852--51857278	29	14.7	29	76	13	244	36	24	3	35	1.74
51857228--51857396	87	2.0	86	82	3	205	30	27	8	33	1.86
51857088--51857396	29	10.7	29	72	13	156	33	25	7	33	1.83
51857087--51857396	58	5.4	57	73	11	222	33	25	7	33	1.83
51859488--51859534	17	2.6	19	80	13	62	46	0	0	53	1.00
51860013--51860051	18	2.2	18	86	4	53	53	7	2	35	1.43
51860242--51860276	17	2.0	18	88	5	54	37	5	5	51	1.50
51860305--51860566	57	4.5	57	77	7	235	30	19	14	35	1.91
51862173--51862219	23	2.0	23	91	4	76	40	0	14	44	1.46
51864226--51864282	23	2.5	23	85	2	80	45	1	0	52	1.11
51867188--51867232	16	2.9	16	75	24	51	35	4	11	48	1.59
51872929--51872969	22	1.9	21	85	5	55	36	9	7	46	1.65
51873633--51873709	6	12.3	6	77	13	75	46	2	0	50	1.15
51873667--51873707	11	3.6	11	83	6	55	48	2	0	48	1.14
51875426--51875601	30	5.9	30	82	2	210	35	23	4	36	1.75
51875428--51875601	90	1.9	90	87	2	251	34	23	4	37	1.76
51875575--51875768	59	3.3	57	76	3	201	29	30	3	36	1.75
51875692--51875768	28	2.7	28	73	18	70	31	31	2	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51877414--51877569	30	5.3	29	80	7	154	41	0	23	34	1.60
51879426--51879517	48	1.9	48	82	4	114	22	20	17	39	1.93
51879376--51879715	161	2.1	161	85	0	464	25	20	17	36	1.95
51879526--51880184	209	3.2	206	84	3	838	23	22	17	36	1.95
51883923--51883949	12	2.2	12	100	0	54	14	18	18	48	1.82
51891926--51892039	23	5.0	23	81	8	126	40	24	24	10	1.87
51891926--51892039	46	2.5	45	79	12	142	40	24	24	10	1.87
51891902--51892039	23	5.9	23	80	7	120	40	23	24	10	1.87
51894398--51894742	30	11.6	30	80	6	310	43	1	19	35	1.58
51894397--51894745	59	5.9	59	80	7	350	44	1	18	35	1.58
51894398--51894742	89	3.9	90	83	7	409	43	1	19	35	1.58
51897026--51897076	26	2.0	25	85	11	68	29	5	3	60	1.38
51897057--51897122	31	2.1	31	83	5	80	30	12	6	51	1.63
51897337--51897533	58	3.3	61	81	5	197	50	11	12	25	1.73
51897362--51897533	58	2.9	60	83	4	206	51	11	12	25	1.73
51898197--51898230	17	2.0	17	94	0	59	29	11	20	38	1.88
51898220--51898360	72	2.0	72	94	0	246	25	17	17	39	1.91
51901946--51901976	2	15.5	2	100	0	62	48	0	0	51	1.00
51902836--51902894	26	2.2	26	77	14	66	62	1	1	33	1.15
51904112--51904154	14	3.1	14	89	0	68	18	0	9	72	1.11
51904126--51904189	17	3.6	17	74	14	58	26	0	7	65	1.19
51905497--51905606	57	1.9	57	81	10	134	26	14	9	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51905865--51905930	29	2.2	31	86	8	91	56	9	6	28	1.54
51915129--51915163	16	2.2	16	90	10	54	14	0	5	80	0.89
51919395--51919441	23	2.0	25	91	8	80	21	8	4	65	1.37
51923496--51923531	6	6.2	6	93	6	65	69	0	0	30	0.89
51923519--51923562	21	2.0	22	86	4	63	59	6	2	31	1.36
51924387--51924428	18	2.2	20	91	8	70	9	4	11	73	1.22
51924448--51924514	12	5.9	12	72	19	63	10	1	13	74	1.14
51924448--51924515	32	2.1	34	86	10	97	10	1	13	75	1.12
51924473--51924511	20	2.0	20	85	10	53	10	0	15	74	1.07
51924642--51924691	17	2.7	19	79	20	61	28	0	6	66	1.15
51928080--51928175	46	2.1	46	92	0	156	45	6	8	39	1.59
51933193--51933281	31	3.0	30	79	11	94	60	3	1	34	1.20
51936001--51936025	3	8.3	3	100	0	50	68	0	0	32	0.90
51949858--51949906	23	2.2	22	85	3	62	67	16	2	14	1.33
51956221--51956269	22	2.3	20	80	13	53	30	10	4	55	1.52
51964039--51964068	1	30.0	1	100	0	60	0	100	0	0	0.00
51966238--51966316	23	3.3	23	75	10	61	70	17	2	8	1.24
51966207--51966290	26	3.1	27	76	10	82	73	19	1	5	1.10
51984774--51984806	13	2.4	14	90	10	50	42	3	0	54	1.15
51984837--51984861	8	3.1	8	100	0	50	60	0	0	40	0.97
51984870--51984947	32	2.3	34	80	10	97	41	3	5	50	1.43
51985041--51985120	35	2.3	35	80	6	81	63	3	5	27	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51985876--51985949	31	2.4	31	86	6	96	28	12	17	41	1.85
51985927--51986158	117	2.0	115	82	3	277	36	17	13	32	1.89
51994159--51994188	4	7.8	4	92	7	53	26	46	0	26	1.53
51999890--51999929	20	2.0	21	95	5	73	47	0	12	40	1.41
52001780--52001853	38	1.9	38	88	0	112	40	17	5	36	1.73
52005411--52005497	31	2.8	31	82	1	111	27	10	16	45	1.79
52009999--52010124	58	2.2	58	81	2	146	40	13	19	26	1.88
52015270--52015294	12	2.1	12	100	0	50	44	0	0	56	0.99
52016820--52016863	21	2.1	21	83	8	54	45	4	2	47	1.35
52016901--52016933	16	2.0	17	88	5	50	51	3	3	42	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193