genome.fa.s4.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  119  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37781049--37781099	11	4.8	11	76	9	52	52	0	5	41	1.25
37781045--37781118	17	4.6	16	83	13	89	52	1	4	41	1.28
37781049--37781126	11	7.9	10	70	26	51	52	2	3	41	1.33
37781482--37782200	76	9.7	77	86	8	978	31	20	14	33	1.93
37791883--37791921	19	2.1	19	85	9	53	41	0	0	58	0.98
37792117--37792187	31	2.4	31	80	4	83	45	9	15	29	1.78
37794311--37794355	21	2.1	21	100	0	90	68	4	4	22	1.25
37794763--37794848	28	3.0	28	72	16	77	36	1	4	58	1.27
37797903--37797958	29	2.0	28	82	3	67	12	8	14	64	1.50
37798008--37798063	22	2.5	21	78	18	60	7	3	14	75	1.16
37798666--37798707	7	6.3	7	78	10	52	14	4	42	38	1.66
37799650--37799889	43	5.6	42	89	2	347	27	27	20	23	1.99
37799650--37799935	85	3.3	85	85	5	364	27	26	19	25	1.99
37799650--37799889	128	1.9	128	87	3	358	27	27	20	23	1.99
37806120--37806155	8	4.5	8	89	0	54	63	2	0	33	1.08
37806071--37806407	111	3.0	109	85	7	426	41	1	7	48	1.41
37806165--37806208	17	2.6	16	79	10	52	40	0	4	54	1.21
37806176--37806446	119	2.3	118	96	3	492	40	1	5	51	1.37
37808444--37808709	29	9.0	29	86	4	318	36	0	24	38	1.59
37808444--37808713	59	4.6	59	87	4	364	35	0	25	38	1.59
37813271--37813308	17	2.2	18	90	4	60	34	0	21	44	1.52
37813573--37813826	41	6.1	41	83	6	278	21	22	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37817224--37817450	29	7.8	29	67	9	86	30	24	2	42	1.68
37817223--37817458	57	4.1	60	78	8	240	30	23	2	44	1.67
37819006--37819066	31	2.0	31	96	0	113	39	13	13	34	1.83
37823620--37824153	99	5.4	100	83	3	630	37	19	25	16	1.93
37823620--37824131	199	2.6	199	83	3	620	37	19	25	16	1.93
37824328--37824536	101	2.1	99	89	1	310	34	16	18	30	1.93
37824343--37824510	51	3.3	51	66	9	128	33	16	17	32	1.92
37824633--37824931	39	7.7	39	67	12	175	24	30	20	24	1.98
37824583--37824933	78	4.5	78	84	3	449	25	30	19	24	1.98
37825576--37825623	23	2.2	20	78	10	51	25	41	18	14	1.88
37825622--37825679	25	2.3	25	93	0	98	20	48	10	20	1.79
37826092--37826130	6	6.3	6	88	5	60	51	0	2	46	1.14
37827324--37827385	30	2.1	29	82	17	74	32	24	6	37	1.81
37827419--37827496	30	2.6	30	67	26	74	33	24	1	41	1.63
37830121--37830163	18	2.5	17	85	7	59	20	18	16	44	1.87
37831013--37831059	6	8.0	6	95	4	87	68	0	0	31	0.90
37833875--37833903	2	14.5	2	100	0	58	0	0	48	51	1.00
37854329--37854400	37	2.0	36	83	8	92	61	8	4	26	1.43
37860682--37860714	12	2.9	12	86	13	52	0	39	0	60	0.97
37860681--37860730	16	3.1	17	83	11	61	2	34	0	64	1.05
37872051--37872095	23	2.0	23	100	0	90	57	17	6	17	1.60
37872560--37872633	33	2.2	33	92	2	121	29	13	0	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37873998--37874031	16	2.1	16	88	0	50	23	0	26	50	1.50
37883265--37883293	13	2.2	13	100	0	58	31	0	0	68	0.89
37883260--37883291	16	2.0	16	93	0	55	28	0	3	68	1.04
37883848--37883903	8	7.0	8	75	15	53	62	1	0	35	1.06
37883849--37883903	15	3.4	16	77	7	67	63	1	0	34	1.05
37884420--37884455	3	12.0	3	93	0	63	2	0	63	33	1.08
37889427--37889472	3	15.3	3	100	0	92	67	0	0	32	0.91
37908060--37908102	22	2.0	22	95	0	77	46	25	18	9	1.79
37908353--37908436	2	42.5	2	92	7	145	50	1	0	48	1.08
37910231--37910270	21	1.9	21	89	0	62	42	27	10	20	1.83
37919204--37919258	12	4.2	13	74	21	53	27	0	0	72	0.85
37921616--37921705	26	3.4	26	93	3	153	51	4	3	41	1.39
37923229--37923280	23	2.2	23	82	3	68	9	23	15	51	1.72
37923241--37923303	24	2.7	24	90	4	94	6	23	20	49	1.72
37924225--37924283	19	3.1	19	80	0	73	49	0	1	49	1.11
37925133--37925186	26	2.1	26	89	6	83	38	11	3	46	1.57
37927232--37927280	25	1.9	26	88	12	75	34	28	18	18	1.94
37929131--37929190	30	2.0	30	100	0	120	40	23	13	23	1.90
37939385--37939434	20	2.4	21	86	3	66	28	10	24	38	1.87
37941794--37941823	2	15.0	2	92	0	51	50	3	0	46	1.18
37945293--37945371	37	2.1	37	85	4	104	35	3	1	59	1.24
37945484--37945552	2	34.5	2	100	0	138	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37946667--37946722	19	2.8	20	84	10	78	28	0	5	66	1.14
37946648--37946719	21	3.4	20	81	13	74	30	0	4	65	1.12
37950747--37950967	41	5.3	41	86	3	282	33	10	26	28	1.90
37958602--37958864	139	1.8	141	90	5	422	21	13	6	58	1.58
37959127--37959342	109	2.0	110	86	4	303	29	14	18	38	1.90
37962420--37962453	17	2.1	17	94	5	61	85	0	14	0	0.60
37963362--37963412	15	3.6	14	80	19	61	76	1	21	0	0.88
37963834--37964154	160	2.0	159	93	0	552	34	19	15	29	1.93
37964396--37964699	98	3.1	95	75	13	303	34	18	17	29	1.94
37964397--37964779	196	2.0	196	89	0	595	34	17	19	28	1.94
37964449--37964749	98	3.0	101	68	16	266	34	18	18	28	1.95
37964445--37964785	95	3.5	95	76	9	355	34	19	19	27	1.95
37964867--37965250	81	4.7	82	85	4	437	28	26	18	27	1.98
37964862--37965251	42	9.6	42	81	6	446	28	26	18	26	1.98
37964868--37965252	205	1.9	203	89	1	590	27	26	18	27	1.98
37965235--37965446	45	4.7	45	84	4	239	35	24	14	25	1.93
37966966--37967010	24	1.9	24	86	4	65	17	17	6	57	1.60
37967225--37967495	146	1.9	147	96	0	499	21	13	6	58	1.58
37967534--37967601	28	2.4	28	82	7	84	27	13	1	57	1.45
37967761--37967978	111	2.0	110	87	2	312	29	12	16	40	1.86
37970146--37970279	42	3.2	42	83	0	151	40	17	24	17	1.91
37972069--37972198	43	3.0	44	72	8	113	38	18	18	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37972197--37972230	17	2.0	17	94	0	59	8	11	32	47	1.71
37972209--37972358	43	3.5	43	88	0	210	24	16	26	33	1.95
37973792--37973833	21	2.0	21	95	4	77	4	33	9	52	1.55
37976965--37977001	16	2.2	17	90	4	58	64	0	0	35	0.94
37976947--37977001	12	4.3	12	77	20	58	61	0	0	38	0.96
37977161--37977203	16	2.4	19	85	11	56	44	18	0	37	1.50
37977199--37977229	12	2.6	12	94	0	53	45	16	0	38	1.47
37977258--37977301	20	2.2	20	87	4	61	52	6	0	40	1.28
37980562--37980603	22	1.9	22	85	9	59	64	14	11	9	1.50
37986298--37986337	15	2.6	16	88	7	57	62	0	0	37	0.95
37987605--37987648	18	2.5	17	85	7	52	63	2	0	34	1.07
37995550--37995585	18	2.1	17	94	5	63	25	2	0	72	0.98
37999590--37999877	52	5.6	52	90	2	438	25	14	23	35	1.94
37999590--37999877	102	2.8	103	90	3	445	25	14	23	35	1.94
38002692--38002738	19	2.5	19	89	0	67	23	36	23	17	1.95
38002887--38002933	19	2.5	19	89	0	67	23	36	23	17	1.95
38003208--38003307	50	2.0	50	100	0	200	22	6	30	42	1.77
38003232--38003309	24	3.2	24	63	20	61	21	5	32	41	1.75
38007205--38007252	21	2.2	21	85	3	60	25	33	2	39	1.67
38007633--38007680	23	2.1	23	96	0	87	56	16	4	22	1.58
38014186--38014250	33	2.0	33	100	0	130	55	3	4	36	1.36
38022183--38022249	30	2.2	30	94	2	107	52	5	2	38	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38022189--38022238	15	3.3	15	72	10	57	52	4	2	42	1.31
38022192--38022240	13	3.5	13	75	20	53	55	4	2	38	1.31
38032345--38032396	22	2.5	21	84	9	63	55	5	3	34	1.42
38032525--38032563	20	2.0	20	89	0	60	56	5	7	30	1.49
38037980--38038013	15	2.3	15	94	0	59	14	5	2	76	1.09
38039000--38039025	10	2.6	10	100	0	52	57	0	0	42	0.98
38039765--38039820	17	3.5	16	71	14	53	30	16	0	53	1.43
38039766--38039842	31	2.5	31	93	0	127	35	12	0	51	1.40
38039851--38039919	18	4.1	17	80	10	56	33	7	1	57	1.35
38039870--38039918	15	3.1	15	85	14	55	32	6	0	61	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193