genome.fa.s1.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  100  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30379146--30379331	87	2.1	88	84	3	241	37	26	2	33	1.71
30379318--30379344	13	2.1	13	100	0	54	51	29	0	18	1.46
30379259--30379397	73	1.9	71	87	7	201	38	24	2	34	1.68
30379230--30379414	101	1.9	101	81	6	234	37	25	2	34	1.71
30387575--30387677	23	4.5	23	74	14	79	10	23	21	44	1.83
30388477--30389016	49	10.9	49	76	6	410	34	17	31	15	1.92
30388529--30389015	99	4.9	98	79	7	405	34	18	31	15	1.92
30388477--30389016	148	3.6	148	78	6	484	34	17	31	15	1.92
30388529--30388993	198	2.4	198	76	6	453	34	18	32	15	1.92
30389859--30389897	14	2.7	15	80	8	53	25	7	10	56	1.59
30392837--30392976	30	4.7	30	71	13	92	37	25	2	35	1.68
30392829--30392976	60	2.5	61	78	8	144	37	25	2	35	1.67
30397097--30397129	10	3.3	10	95	0	57	6	48	0	45	1.27
30404380--30404463	42	2.0	42	86	4	116	46	21	0	32	1.52
30405019--30405069	26	2.0	26	88	7	77	21	27	11	39	1.88
30406146--30406218	34	2.1	34	87	5	103	56	0	15	28	1.40
30407163--30407226	32	2.0	32	96	0	119	31	23	12	32	1.92
30409672--30409700	10	3.0	10	95	5	51	31	0	41	27	1.56
30411424--30411476	24	2.2	24	86	0	70	49	11	11	28	1.73
30414270--30414405	59	2.3	58	83	3	175	16	16	30	36	1.90
30414314--30414469	79	2.0	79	83	7	201	16	17	29	35	1.93
30414373--30414427	21	2.6	21	94	0	101	16	20	29	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30420542--30420736	37	5.3	37	74	3	160	13	15	31	38	1.87
30420542--30420700	74	2.1	74	86	2	221	14	16	32	37	1.89
30420542--30420742	74	2.7	74	82	3	217	13	15	31	38	1.87
30423232--30423426	52	3.7	53	80	13	226	28	14	24	32	1.94
30423232--30423423	105	1.8	105	86	5	280	29	13	24	32	1.93
30424193--30424247	21	2.6	21	82	0	65	34	10	20	34	1.87
30425965--30426207	113	2.2	113	91	0	387	34	26	10	28	1.89
30433395--30433474	25	3.2	25	81	8	85	37	22	26	13	1.91
30433433--30433485	23	2.3	23	87	3	72	39	24	22	13	1.90
30433695--30433734	14	2.9	14	96	3	73	42	20	0	37	1.52
30436199--30436264	31	2.1	31	83	5	80	56	1	3	39	1.24
30437140--30437181	17	2.5	17	77	14	59	54	4	0	40	1.21
30437378--30437435	17	3.1	19	72	22	52	65	1	3	29	1.19
30438455--30438510	28	2.0	28	85	0	76	69	1	1	26	1.08
30438465--30438509	9	4.7	10	74	20	51	68	0	2	28	1.01
30438661--30438712	20	2.7	19	77	11	61	36	3	1	57	1.28
30439791--30439839	18	2.8	16	82	17	62	63	4	0	32	1.13
30443821--30443863	19	2.2	19	87	4	59	23	6	2	67	1.27
30445017--30445056	20	2.1	19	90	4	62	70	15	0	15	1.18
30444987--30445110	44	2.8	43	70	15	101	67	17	4	9	1.36
30445068--30445124	29	2.0	29	89	6	89	68	21	3	7	1.29
30445079--30445130	21	2.5	21	84	3	70	71	21	1	5	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30445721--30445753	10	2.9	12	82	17	52	27	0	6	66	1.15
30445748--30445787	14	2.7	14	88	7	53	50	0	0	50	1.00
30445773--30445808	19	1.9	19	88	5	56	44	0	0	55	0.99
30448268--30448300	14	2.4	14	90	10	50	39	6	24	30	1.79
30451718--30451758	17	2.5	17	80	15	50	56	0	2	41	1.13
30451722--30451765	16	2.9	15	80	12	54	59	0	2	38	1.10
30452174--30452283	41	2.7	41	78	4	107	46	28	0	24	1.59
30452262--30452331	6	11.3	6	78	14	63	62	12	2	21	1.42
30455362--30455442	28	2.9	27	78	17	85	64	7	0	28	1.20
30456133--30456170	19	1.9	21	89	10	62	23	7	2	65	1.32
30458109--30458157	21	2.3	22	79	10	57	26	4	6	63	1.36
30468867--30468934	33	2.1	33	100	0	136	39	23	13	23	1.90
30474049--30474127	17	4.6	17	80	1	86	34	1	6	58	1.32
30474820--30474886	26	2.6	26	86	6	84	47	0	4	47	1.22
30476103--30476327	28	7.8	28	78	7	175	39	24	2	34	1.68
30476092--30476386	29	10.2	29	81	3	247	36	25	2	35	1.70
30476403--30476723	146	2.2	145	79	1	365	34	21	8	35	1.83
30487650--30487688	14	2.5	17	88	12	57	53	0	5	41	1.23
30488202--30488269	36	2.0	33	86	13	93	52	0	5	41	1.25
30489804--30489843	21	1.9	21	90	10	64	70	5	0	25	1.08
30493792--30493845	22	2.4	22	87	9	74	50	38	0	11	1.38
30493896--30493944	14	3.5	14	81	10	55	20	20	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30493905--30493945	21	2.0	21	90	0	64	19	19	21	39	1.93
30500448--30500487	21	1.9	21	90	10	64	12	20	30	37	1.89
30500478--30500516	21	1.9	20	89	5	60	15	12	20	51	1.76
30502913--30502970	18	3.1	19	78	16	59	43	5	0	51	1.24
30502927--30502960	17	1.9	18	88	5	52	50	0	0	50	1.00
30502927--30502968	16	2.5	17	84	7	50	47	2	0	50	1.14
30503745--30504014	30	9.0	30	78	8	212	37	5	20	37	1.76
30503753--30504013	90	2.9	88	80	8	244	37	5	20	36	1.76
30505282--30505322	4	10.5	4	84	5	57	73	0	2	24	0.96
30505252--30505291	21	1.9	21	84	0	53	37	0	2	60	1.11
30506059--30506200	39	3.6	40	75	6	146	24	16	28	30	1.97
30506220--30506373	50	3.1	50	77	9	152	20	24	18	35	1.95
30517938--30518135	30	6.7	30	75	11	158	36	7	18	37	1.79
30517938--30518111	60	2.9	58	81	5	179	36	7	17	38	1.78
30519429--30519469	4	10.5	4	80	15	50	70	0	2	26	0.99
30519813--30519846	17	2.0	17	100	0	68	29	0	0	70	0.87
30523082--30523209	61	2.1	62	79	4	134	44	14	4	35	1.67
30523141--30523294	81	1.9	81	86	1	220	44	14	3	38	1.61
30523188--30523236	19	2.4	20	83	13	64	48	12	2	36	1.52
30524159--30524196	19	2.0	19	85	10	51	47	0	5	47	1.24
30524891--30524933	22	2.0	22	85	0	59	37	0	0	62	0.95
30525002--30525037	18	2.0	18	94	0	63	44	0	2	52	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30525982--30526012	16	1.9	16	93	0	53	51	9	0	38	1.35
30527959--30528121	87	1.9	86	88	2	247	23	16	24	34	1.95
30532715--30532792	23	3.6	23	84	6	101	43	19	28	8	1.81
30532733--30532795	19	3.1	19	81	9	72	46	17	28	7	1.76
30534035--30534087	18	2.8	18	80	13	54	47	0	1	50	1.12
30538933--30538991	26	2.3	26	87	0	91	22	10	10	57	1.61
30556981--30557025	14	3.1	14	81	6	54	73	0	4	22	1.01
30559088--30559145	17	3.4	18	75	13	52	67	1	0	31	1.01
30560144--30560188	5	8.8	5	92	2	72	42	2	0	55	1.12
30563961--30564087	23	5.6	22	76	10	87	11	21	23	43	1.85
30564563--30564601	20	1.9	21	84	5	53	33	10	2	53	1.48
30569687--30569725	15	2.6	15	83	0	51	66	5	23	5	1.32
30572881--30572934	21	2.6	21	73	2	56	38	24	5	31	1.78
30575419--30575565	73	2.0	73	100	0	294	33	9	34	23	1.87
30575866--30575893	3	9.3	3	100	0	56	64	0	0	35	0.94
30577598--30577775	87	2.0	87	97	0	338	38	15	12	33	1.85
30581538--30581867	167	2.0	167	100	0	660	36	6	10	46	1.63
30588594--30588687	41	2.3	41	96	0	170	37	28	6	27	1.81
30592639--30592676	5	7.2	5	88	11	58	78	0	2	18	0.86
30592642--30592674	17	1.9	17	100	0	66	78	0	3	18	0.87
30598388--30598429	23	1.9	23	85	9	61	23	16	9	50	1.75
30603576--30603625	21	2.4	21	79	0	55	28	12	26	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30607659--30607708	23	2.3	22	82	6	57	26	18	4	52	1.63
30611562--30611629	21	3.3	21	87	6	95	19	4	36	39	1.71
30613890--30614001	28	4.0	28	82	0	143	29	16	16	37	1.91
30621558--30621606	25	2.0	25	84	8	64	36	2	12	48	1.52
30635834--30635905	16	4.5	16	92	0	117	36	4	31	27	1.76
30636075--30636220	58	2.5	55	81	13	168	50	1	2	45	1.24
30639802--30639889	15	6.0	14	71	17	54	50	2	0	47	1.13
30639763--30639889	58	2.2	57	83	9	152	48	1	0	48	1.16
30644285--30644362	40	2.0	39	94	2	138	37	24	12	25	1.91
30647038--30647077	5	7.6	5	83	10	53	77	2	5	15	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126