genome.fa.s1.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  112  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33440205--33440304	43	2.3	43	89	1	157	31	8	13	48	1.71
33441327--33441372	14	3.3	14	82	11	58	43	30	2	23	1.66
33441577--33441626	26	1.9	26	83	0	64	62	8	0	30	1.24
33444514--33444567	21	2.6	21	97	2	101	48	3	14	33	1.62
33446192--33446245	20	2.7	20	88	0	81	27	9	33	29	1.88
33454533--33454592	22	2.7	22	74	7	59	46	6	1	45	1.39
33456727--33456769	22	1.9	23	90	4	70	34	11	23	30	1.90
33459218--33459256	17	2.3	17	90	0	60	46	20	12	20	1.83
33463192--33463237	21	2.1	22	88	4	67	45	32	0	21	1.52
33463288--33463365	10	7.6	10	72	4	57	16	26	30	25	1.97
33463286--33463344	20	3.0	20	82	0	73	16	25	32	25	1.97
33464429--33464461	3	11.3	3	93	6	59	30	0	0	69	0.88
33470410--33470455	21	2.1	22	92	4	76	43	34	0	21	1.53
33470506--33470541	10	3.6	10	88	0	54	16	30	30	22	1.96
33470504--33470541	20	1.9	20	94	0	67	18	31	28	21	1.97
33470550--33470589	13	3.0	13	78	7	53	20	27	22	30	1.98
33471640--33471678	3	13.3	3	89	5	62	28	0	2	69	1.02
33477273--33477303	2	15.5	2	93	0	53	51	3	0	45	1.17
33477969--33478002	17	2.1	17	88	5	52	50	20	0	29	1.49
33478287--33478349	22	2.9	22	87	0	99	28	17	23	30	1.97
33478269--33478447	92	2.0	91	87	1	259	39	14	16	29	1.88
33478383--33478441	22	2.7	22	81	0	73	33	13	13	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33480023--33480146	61	2.0	60	95	1	221	14	35	14	35	1.87
33489414--33489448	18	1.9	18	88	0	52	54	0	0	45	0.99
33489412--33489466	21	2.6	21	80	11	60	50	0	0	49	1.00
33493865--33494105	29	8.2	28	73	14	143	34	3	29	32	1.74
33493920--33494053	30	4.6	29	75	13	107	35	2	29	32	1.73
33493865--33494056	58	3.3	57	85	6	260	35	3	28	32	1.73
33493918--33494085	87	1.9	87	81	12	202	33	2	30	33	1.71
33493865--33494145	58	4.8	56	76	13	187	33	3	27	34	1.74
33493977--33494105	29	4.4	29	83	14	151	31	3	32	33	1.73
33493981--33494134	30	5.2	30	71	10	97	31	2	27	37	1.71
33496050--33496131	6	13.8	6	72	16	64	57	1	1	40	1.14
33496058--33496109	11	4.9	11	73	17	56	59	0	1	38	1.08
33496052--33496131	17	4.9	17	83	9	112	58	1	1	38	1.14
33496033--33496134	11	8.7	11	70	11	51	52	0	0	45	1.13
33496058--33496134	31	2.6	28	83	6	91	57	1	1	40	1.15
33500207--33500247	21	2.0	21	85	9	57	41	24	9	24	1.85
33503569--33503758	60	3.2	59	85	2	263	23	16	13	47	1.81
33503599--33503704	31	3.6	28	75	8	95	25	17	12	44	1.84
33503907--33504070	59	2.8	59	94	2	276	45	14	16	24	1.84
33504043--33504160	30	3.9	29	72	17	98	45	11	18	23	1.83
33503984--33504160	89	2.0	90	84	7	236	45	12	18	23	1.84
33520173--33520216	23	1.9	23	85	0	61	47	2	9	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33524850--33524923	27	2.5	31	73	24	79	32	4	5	58	1.40
33532220--33532266	18	2.5	19	80	13	53	14	34	8	42	1.77
33534006--33534051	6	7.7	6	100	0	92	50	15	0	34	1.44
33539734--33539957	29	7.7	29	65	22	94	36	3	26	33	1.74
33539733--33540034	59	5.0	58	76	13	261	34	4	30	30	1.77
33539735--33539965	116	2.0	118	84	3	306	36	3	26	32	1.74
33539856--33539958	29	3.6	29	75	21	108	35	1	26	35	1.68
33539910--33540037	67	1.9	67	93	0	220	30	3	36	28	1.75
33540782--33540812	14	2.2	14	94	0	53	0	16	0	83	0.64
33541732--33541794	16	3.8	17	75	6	67	55	4	0	39	1.21
33541735--33541787	27	2.0	27	84	0	70	56	5	0	37	1.23
33544179--33544242	31	2.1	30	85	8	85	48	6	1	43	1.37
33547980--33548029	25	2.0	25	88	7	75	50	4	16	30	1.63
33549040--33549132	29	3.2	29	74	7	91	29	7	30	33	1.85
33549138--33549272	30	4.5	30	85	3	166	39	2	21	36	1.69
33549129--33549272	60	2.4	60	88	3	202	38	2	21	36	1.68
33549126--33549291	30	5.6	29	79	11	142	38	3	21	37	1.69
33549126--33549290	60	2.8	60	81	7	160	38	3	20	37	1.68
33550322--33550904	209	2.8	208	89	2	848	23	22	17	36	1.95
33551484--33551973	50	9.9	50	70	9	292	17	30	16	35	1.92
33551550--33551889	99	3.4	98	76	5	281	18	31	15	34	1.92
33552873--33552960	24	3.7	24	77	15	76	1	22	0	76	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33552873--33552959	7	11.1	8	73	19	69	1	22	0	75	0.86
33552875--33552959	31	2.7	32	83	7	102	1	22	0	76	0.85
33552876--33552948	38	1.9	37	86	10	103	1	23	0	75	0.88
33552877--33552953	18	4.1	18	73	22	61	1	22	0	76	0.86
33556470--33556502	16	2.0	17	88	5	50	75	9	15	0	1.03
33558133--33558266	29	4.6	29	80	9	132	32	6	27	32	1.83
33560102--33560191	6	15.3	6	72	15	64	54	2	2	41	1.25
33560095--33560188	17	5.5	17	85	1	134	55	2	2	40	1.24
33560494--33560569	33	2.3	33	97	0	143	23	18	11	46	1.82
33563701--33563804	6	18.0	6	72	18	78	41	1	1	54	1.22
33563713--33563804	17	5.7	16	83	11	116	41	2	1	55	1.19
33563701--33563804	11	9.0	11	72	15	68	41	1	1	54	1.22
33565670--33566032	58	6.2	59	89	2	522	32	27	4	35	1.76
33565670--33566032	117	3.1	118	92	3	567	32	27	4	35	1.76
33565670--33566074	175	2.3	173	86	4	528	32	28	5	34	1.79
33565670--33566074	58	6.9	58	86	5	498	32	28	5	34	1.79
33577888--33578554	68	9.9	67	89	4	979	34	16	20	28	1.94
33578377--33578497	61	2.0	62	95	1	217	33	15	20	29	1.94
33578862--33578950	11	8.0	11	75	2	70	41	2	2	53	1.25
33578873--33578950	17	4.7	16	82	7	93	41	2	1	55	1.22
33578861--33578950	6	16.0	6	72	17	68	41	2	2	54	1.25
33581044--33581204	29	5.6	28	68	15	87	32	25	3	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33580830--33581276	59	7.6	59	86	2	544	32	28	4	35	1.76
33582513--33582537	12	2.1	12	100	0	50	76	0	0	24	0.80
33582520--33582564	18	2.5	19	75	13	51	66	0	0	33	0.92
33594983--33595039	26	2.2	25	78	9	62	33	3	8	54	1.48
33602529--33602629	29	3.5	28	79	14	107	35	4	23	35	1.77
33602528--33602637	58	1.9	58	85	7	152	34	4	24	36	1.76
33602529--33602638	30	3.7	31	81	11	133	34	4	24	36	1.76
33603909--33603981	3	23.7	3	72	10	58	34	2	4	58	1.31
33605495--33605972	59	8.1	60	83	5	566	34	4	29	31	1.78
33605556--33605972	176	2.4	176	87	2	588	33	3	29	32	1.76
33605584--33605970	30	13.2	29	65	25	138	33	3	30	31	1.76
33606050--33606383	164	2.0	164	89	2	503	44	13	17	25	1.84
33606563--33606615	23	2.3	22	84	12	63	30	9	3	56	1.49
33607272--33607324	21	2.4	23	81	6	65	35	3	3	56	1.35
33608057--33608138	18	4.7	17	82	10	94	51	2	1	45	1.22
33608054--33608173	41	3.2	36	81	9	109	51	1	2	44	1.24
33608051--33608173	6	21.0	6	70	14	78	50	1	2	45	1.24
33608087--33608173	41	2.1	42	89	2	131	54	0	3	42	1.17
33608095--33608199	41	2.5	41	79	1	111	53	1	2	41	1.26
33608105--33608197	24	3.7	24	74	21	75	53	2	3	40	1.29
33608072--33608199	59	2.2	59	81	4	141	52	3	2	42	1.30
33608661--33608736	6	13.0	6	74	20	72	52	0	3	43	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33608661--33608747	17	5.4	16	80	12	97	52	0	4	42	1.21
33608661--33608758	11	8.5	11	73	12	63	53	1	4	41	1.27
33608672--33608758	11	7.4	12	76	15	67	54	1	4	40	1.29
33608673--33608731	31	1.9	31	96	0	109	54	0	5	40	1.23
33610374--33610407	15	2.3	15	95	5	61	35	5	11	47	1.65
33610621--33610701	36	2.2	37	88	2	119	44	2	1	51	1.22
33622572--33622961	29	13.4	29	72	13	211	31	6	26	35	1.83
33622572--33622988	88	4.7	87	85	7	476	31	6	25	35	1.82
33622572--33622961	59	6.7	57	71	12	240	31	6	26	35	1.83
33622566--33623162	58	10.3	57	71	17	294	32	5	26	35	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126