genome.fa.s1.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  84  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25638153--25638504	30	12.1	29	79	11	278	37	2	24	35	1.68
25638151--25638500	59	6.0	58	78	11	317	37	2	24	35	1.68
25638757--25638799	19	2.3	19	80	4	52	62	2	4	30	1.28
25639361--25639390	6	5.0	6	91	0	51	50	46	0	3	1.18
25647483--25647579	40	2.4	39	88	5	149	25	22	10	41	1.85
25676407--25676451	23	2.0	23	86	0	63	44	17	0	37	1.49
25686341--25686487	68	2.2	68	98	0	285	38	17	14	29	1.89
25687392--25687435	23	2.0	22	86	4	61	45	15	0	38	1.47
25696782--25696920	71	1.9	72	94	4	244	33	11	15	39	1.83
25696934--25696961	13	2.2	13	100	0	56	53	14	7	25	1.66
25710446--25710504	22	2.7	22	86	0	91	20	18	33	27	1.96
25713907--25713952	25	1.9	24	86	8	67	28	39	6	26	1.81
25722590--25722955	43	8.3	43	71	11	155	25	32	24	18	1.97
25722769--25722970	43	4.7	42	82	3	188	26	30	24	17	1.97
25722813--25722997	86	2.2	86	80	3	194	28	29	21	20	1.98
25727466--25727510	23	1.9	24	81	4	56	55	6	13	24	1.62
25728805--25729179	43	9.0	43	77	7	351	25	31	24	19	1.98
25728976--25729039	33	1.9	33	93	6	112	25	34	25	15	1.95
25728927--25729084	76	2.1	75	90	2	244	22	34	25	17	1.96
25728901--25729131	119	1.9	118	90	0	363	24	32	25	17	1.97
25729322--25729409	43	2.0	43	82	0	104	23	30	20	25	1.98
25730116--25730378	129	2.0	129	81	4	307	23	31	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25730278--25731236	86	11.2	86	74	8	603	22	30	21	24	1.99
25730278--25731236	172	5.6	171	73	6	672	22	30	21	24	1.99
25731866--25732148	85	3.3	86	79	4	270	20	30	21	26	1.98
25731944--25732481	86	6.3	85	69	6	221	23	29	20	27	1.99
25733064--25733229	86	1.9	86	80	2	190	24	28	19	27	1.98
25733198--25733363	43	3.9	43	87	0	224	24	31	26	18	1.97
25733316--25733507	86	2.2	86	80	0	213	21	28	23	27	1.99
25733620--25733951	86	3.9	85	74	7	235	23	29	21	25	1.99
25733908--25734175	43	6.2	43	72	10	197	25	29	22	23	1.99
25734037--25734933	86	10.5	86	71	8	335	23	29	20	26	1.99
25734425--25734600	85	2.1	86	79	5	187	26	27	19	25	1.99
25737408--25737451	18	2.5	18	92	3	72	61	13	9	15	1.56
25747012--25747654	86	7.6	87	77	5	541	20	30	23	24	1.98
25747028--25747660	251	2.5	254	80	5	675	20	31	23	24	1.98
25747012--25747633	337	1.8	337	81	4	781	20	30	23	24	1.98
25747763--25747804	22	2.0	21	85	4	57	61	2	0	35	1.09
25762623--25762658	2	18.0	2	100	0	72	50	0	0	50	1.00
25766018--25766309	145	2.0	145	97	0	548	24	20	15	40	1.91
25770964--25771013	26	1.9	26	84	8	66	20	24	18	38	1.93
25770980--25771064	26	3.3	25	80	6	89	22	18	15	43	1.87
25771006--25771053	13	3.7	13	83	10	71	22	18	12	45	1.83
25774945--25774984	19	2.1	19	95	0	71	22	32	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25774975--25775034	19	3.1	19	85	2	84	21	16	15	46	1.83
25785621--25785645	5	5.0	5	100	0	50	20	0	0	80	0.72
25785664--25785708	19	2.4	19	81	7	56	37	0	4	57	1.19
25786502--25786542	16	2.6	16	88	3	57	14	12	0	73	1.11
25801860--25802091	117	2.0	117	91	1	376	27	25	22	24	2.00
25804039--25804077	21	1.9	21	89	5	62	66	7	12	12	1.43
25819276--25819422	20	7.3	20	84	3	145	7	30	21	40	1.81
25819276--25819422	60	2.5	60	80	4	172	7	30	21	40	1.81
25834852--25835584	366	2.0	366	98	0	1430	25	18	25	29	1.98
25839911--25839955	17	2.8	16	81	18	58	0	22	0	77	0.76
25839911--25839956	10	4.3	11	86	8	60	0	21	0	78	0.76
25852869--25852904	18	1.9	19	94	5	65	47	27	11	13	1.77
25853370--25853443	30	2.5	30	84	6	89	48	0	1	50	1.09
25865253--25865301	20	2.6	18	78	15	53	32	0	6	61	1.21
25879447--25879616	84	2.0	84	93	0	286	30	27	13	28	1.94
25888670--25888705	11	3.3	11	85	14	56	2	22	0	75	0.94
25889213--25889309	11	8.8	11	75	0	77	18	26	26	27	1.98
25889213--25889309	22	4.4	22	80	0	95	18	26	26	27	1.98
25889305--25889372	7	9.9	7	83	3	66	20	19	19	41	1.91
25889305--25889372	21	3.3	21	89	2	93	20	19	19	41	1.91
25890434--25890478	18	2.6	18	86	10	58	26	0	6	66	1.16
25896968--25897016	5	9.4	5	82	12	55	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25896968--25897032	28	2.3	30	82	15	84	1	23	0	75	0.89
25896971--25897019	10	4.6	10	82	12	62	0	20	0	79	0.73
25897608--25897657	19	2.8	16	78	21	55	58	14	12	16	1.64
25926713--25926754	18	2.3	19	80	12	52	35	28	19	16	1.93
25947629--25947675	24	2.0	24	84	12	62	51	10	12	25	1.72
25987743--25987790	12	3.9	12	78	5	51	27	2	2	68	1.11
25992693--25992744	15	3.3	15	72	17	52	30	7	15	46	1.74
26008627--26008666	18	2.3	18	86	4	55	57	10	15	17	1.64
26012173--26012315	48	3.0	48	96	0	268	27	20	18	33	1.96
26046473--26046504	7	4.9	7	88	11	50	71	0	12	15	1.14
26046479--26046504	13	2.0	13	100	0	52	69	0	15	15	1.20
26049835--26049900	29	2.3	28	74	25	66	19	7	25	46	1.76
26054485--26054548	26	2.5	26	80	10	85	35	25	14	25	1.93
26061666--26061858	53	3.6	53	90	0	269	29	17	20	33	1.95
26066523--26066562	18	2.3	18	86	4	55	55	12	15	17	1.70
26074799--26074828	14	2.2	14	94	5	53	36	10	23	30	1.87
26080391--26080417	11	2.5	11	100	0	54	59	11	7	22	1.56
26085418--26085442	12	2.1	12	100	0	50	16	16	0	68	1.22
26092723--26092769	24	2.0	23	84	12	60	51	10	12	25	1.72
26094889--26094925	17	2.2	17	90	0	56	56	18	10	13	1.66
26101707--26102362	327	2.0	325	92	1	1082	33	11	13	41	1.80
26102388--26102422	13	2.7	13	91	8	54	17	2	0	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26105266--26105308	8	4.9	8	79	20	50	79	0	16	4	0.90
26105273--26105333	25	2.7	22	80	19	56	70	4	16	8	1.29
26118599--26118628	15	2.0	15	93	0	51	16	0	10	73	1.09
26123427--26123470	23	2.0	22	86	13	63	45	2	47	4	1.35
26132800--26132885	38	2.3	39	86	9	124	6	24	17	51	1.70
26139386--26139413	7	4.0	7	100	0	56	14	0	42	42	1.45
26149646--26149687	21	2.0	22	85	4	59	64	4	19	11	1.44
26154061--26154107	24	2.0	23	83	4	58	29	17	8	44	1.78
26167079--26167130	21	2.5	20	84	12	61	34	26	13	25	1.93
26171556--26171600	17	2.6	17	92	0	72	20	8	13	57	1.62
26171540--26171598	17	3.0	21	70	25	58	20	10	13	55	1.66
26177403--26177451	12	4.1	12	92	5	73	0	14	14	71	1.15
26177403--26177451	23	2.0	24	88	7	73	0	14	14	71	1.15
26183550--26183830	123	2.3	123	86	1	375	21	18	17	42	1.89
26183449--26184108	341	1.9	337	87	4	961	21	20	16	41	1.90
26195732--26195773	14	3.0	14	80	13	50	73	7	0	19	1.05
26195974--26196056	31	2.8	29	82	8	103	48	4	12	34	1.62
26195927--26196080	30	5.1	30	79	6	123	38	4	19	37	1.72
26202804--26202846	22	1.9	23	85	4	61	62	6	0	30	1.21
26214778--26214900	50	2.5	50	86	2	167	33	6	8	51	1.59
26216916--26216954	17	2.3	17	82	13	53	74	2	23	0	0.94
26218276--26218301	8	3.2	8	100	0	52	15	38	0	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26229786--26229832	23	2.0	23	84	8	60	42	10	12	34	1.78
26234685--26234722	20	1.9	20	88	0	58	34	2	13	50	1.55
26239448--26240490	520	2.0	520	99	0	2068	33	19	12	33	1.90
26240989--26241015	2	13.5	2	100	0	54	51	0	0	48	1.00
26241770--26241811	15	2.7	16	74	7	50	30	4	0	64	1.14
26243077--26243115	18	2.1	19	85	9	53	28	2	12	56	1.50
26244440--26244566	59	2.2	59	77	8	134	22	12	14	50	1.76
26244712--26244862	60	2.6	58	80	7	162	48	9	16	25	1.76
26246327--26246372	18	2.4	19	82	7	58	43	0	2	54	1.12
26253096--26253140	17	2.6	18	82	10	58	44	0	2	53	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126