genome.fa.s1.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  121  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36285028--36285086	29	2.0	30	86	3	84	25	3	18	52	1.61
36285211--36285297	31	2.8	31	77	14	99	45	10	10	33	1.72
36286746--36286845	17	6.0	17	75	11	91	44	3	1	52	1.23
36286757--36286845	6	15.0	6	76	18	89	44	3	0	51	1.18
36286774--36286824	11	4.8	11	76	9	52	41	5	0	52	1.25
36286757--36286842	37	2.3	38	84	10	113	43	3	0	53	1.18
36288863--36289154	59	5.0	57	81	10	218	34	28	2	34	1.70
36288835--36289161	29	11.1	28	66	18	112	33	29	3	33	1.73
36288905--36289161	59	4.4	59	86	2	338	33	29	1	34	1.69
36288908--36289162	29	8.7	28	66	19	121	33	29	1	34	1.69
36297298--36297393	47	2.0	47	83	15	119	32	3	1	63	1.17
36299827--36300032	108	1.9	107	87	3	297	43	12	12	31	1.79
36306087--36306148	32	1.9	32	96	0	115	38	22	9	29	1.86
36307876--36307915	18	2.2	18	100	0	80	42	5	0	52	1.23
36308036--36308077	21	2.0	21	81	9	50	69	4	2	23	1.20
36320110--36320137	2	14.0	2	100	0	56	0	50	0	50	1.00
36326719--36326760	12	3.7	12	93	6	70	0	19	38	42	1.51
36327551--36327576	2	13.0	2	100	0	52	50	0	0	50	1.00
36331275--36331308	17	2.1	17	88	5	52	26	0	0	73	0.83
36338257--36338742	161	3.0	161	99	0	963	29	9	26	34	1.88
36345507--36345541	9	3.9	9	88	0	52	34	8	0	57	1.29
36345542--36345614	29	2.3	32	84	9	89	56	4	0	39	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36349856--36349938	29	2.8	31	74	18	88	46	7	14	31	1.71
36350661--36350702	20	2.1	20	100	0	84	33	4	4	57	1.41
36355420--36355446	14	1.9	14	100	0	54	29	0	11	59	1.32
36359278--36359348	29	2.4	29	81	9	74	42	1	5	50	1.34
36359906--36359939	17	1.9	18	94	5	61	64	0	0	35	0.94
36366353--36366555	87	2.3	87	87	0	289	36	17	18	27	1.94
36367562--36367616	23	2.4	24	82	14	71	36	5	3	54	1.41
36371681--36371734	24	2.2	24	83	3	63	51	0	0	48	1.00
36373045--36373092	20	2.5	20	86	3	62	50	6	10	33	1.62
36373056--36373094	20	2.0	20	94	0	69	43	7	15	33	1.75
36375645--36375698	14	3.6	14	78	9	54	62	1	1	33	1.16
36376279--36376837	73	7.7	73	89	2	838	27	18	29	24	1.98
36376279--36376837	146	3.8	146	95	0	938	27	18	29	24	1.98
36376824--36376879	7	8.0	7	100	0	112	28	14	42	14	1.84
36378588--36378658	36	2.0	36	88	0	106	35	19	2	42	1.66
36396936--36397039	51	2.0	51	81	0	118	29	21	6	42	1.78
36405510--36405564	25	2.2	25	87	6	76	63	12	16	7	1.50
36408220--36408256	18	2.1	18	89	0	56	24	27	0	48	1.51
36408553--36408588	18	2.1	18	89	5	56	33	25	0	41	1.55
36417671--36417746	31	2.4	32	83	10	95	61	5	3	28	1.35
36417672--36417747	7	10.0	7	71	13	53	63	3	3	28	1.30
36420267--36420305	6	6.3	6	84	3	51	17	2	76	2	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36427935--36427993	17	3.4	17	71	17	57	57	6	3	32	1.41
36431604--36431722	57	2.1	58	88	4	179	32	0	19	47	1.49
36431924--36431968	23	2.0	23	86	0	63	35	20	13	31	1.91
36447033--36447101	36	1.9	36	93	0	120	33	7	23	36	1.82
36456449--36456500	2	26.0	2	92	0	86	50	1	1	46	1.23
36457304--36457345	15	2.9	16	80	20	56	38	0	4	57	1.20
36459342--36459801	162	2.8	162	93	0	785	24	17	13	43	1.86
36459923--36460016	28	3.3	27	71	14	80	34	30	0	35	1.58
36459926--36460077	29	5.1	28	66	14	81	32	30	1	36	1.66
36459945--36460107	30	5.5	30	69	21	110	33	28	2	34	1.71
36459920--36460107	59	3.2	59	91	0	295	32	29	2	35	1.70
36459945--36460107	31	5.4	29	69	22	106	33	28	2	34	1.71
36459920--36460114	30	6.6	30	69	22	108	31	30	3	34	1.73
36461921--36461950	16	1.9	16	93	6	53	13	13	3	70	1.30
36461916--36461976	22	2.8	22	85	7	72	13	11	3	72	1.24
36463997--36464034	18	2.1	19	85	9	53	44	2	0	52	1.14
36476281--36476321	19	2.2	19	86	0	55	31	9	2	56	1.45
36477326--36477359	15	2.2	16	89	5	52	32	2	0	64	1.08
36480637--36480704	16	4.2	16	72	12	50	63	0	0	36	0.95
36480621--36480679	25	2.3	25	82	8	66	64	1	0	33	1.04
36485877--36485905	3	9.7	3	100	0	58	31	0	0	68	0.89
36490030--36490068	20	2.0	20	89	0	60	23	5	28	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36491003--36491027	2	12.5	2	100	0	50	52	0	0	48	1.00
36496637--36496661	9	2.8	9	100	0	50	16	60	0	24	1.36
36500550--36500590	19	2.2	19	86	8	57	70	4	0	24	1.06
36501257--36501371	57	2.0	57	98	0	221	29	20	21	28	1.98
36504195--36504520	163	2.0	163	98	0	625	32	16	17	33	1.93
36505233--36505311	39	2.0	39	97	0	149	30	13	22	32	1.93
36522576--36522619	22	2.0	23	86	4	63	38	4	2	54	1.33
36525301--36525335	16	2.2	16	89	0	52	71	0	0	28	0.86
36526874--36527006	53	2.5	53	76	10	128	29	3	10	57	1.47
36527556--36527608	15	3.2	16	78	19	56	66	3	0	30	1.10
36528812--36528863	7	7.4	7	97	0	77	34	0	50	15	1.45
36531589--36531634	24	1.9	24	81	0	56	30	23	13	32	1.93
36534341--36534453	51	2.2	51	82	3	129	36	11	7	45	1.68
36539169--36539228	30	2.0	30	87	3	86	53	8	0	38	1.31
36548030--36548200	90	1.9	90	80	4	202	23	20	19	36	1.95
36550607--36550914	81	3.8	80	83	5	336	42	24	6	26	1.79
36553814--36553923	35	3.2	34	83	7	116	43	0	3	51	1.25
36553846--36553892	6	8.2	6	76	9	53	44	0	4	51	1.21
36553815--36553923	52	2.1	52	86	3	148	44	0	3	51	1.25
36553814--36553923	17	6.4	17	79	11	98	43	0	3	51	1.25
36554577--36554622	12	3.9	12	83	13	60	30	6	0	63	1.20
36554575--36554607	3	11.0	3	93	0	57	33	3	0	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36555848--36555991	30	4.8	30	77	10	125	40	20	2	36	1.65
36555956--36556330	59	6.4	59	81	4	368	31	26	4	38	1.75
36555983--36556323	117	2.9	115	82	3	387	31	25	3	39	1.74
36563410--36563445	4	9.2	4	93	6	65	22	0	25	52	1.47
36563412--36563441	15	2.0	15	100	0	60	20	0	26	53	1.46
36563410--36563446	19	1.9	19	100	0	74	21	0	24	54	1.45
36564734--36564923	97	2.0	97	80	4	213	27	14	16	41	1.88
36565568--36565604	4	9.0	4	88	5	56	21	0	0	78	0.75
36565583--36565756	63	2.8	63	84	10	223	43	0	2	53	1.17
36565587--36565756	59	2.9	58	82	14	201	44	0	2	52	1.18
36570757--36570804	25	1.9	25	91	0	78	79	2	18	0	0.84
36570773--36570802	14	2.1	14	93	0	51	76	0	23	0	0.78
36570756--36570806	20	2.6	21	81	12	72	78	1	19	0	0.85
36571232--36571279	12	3.7	12	77	20	51	22	2	0	75	0.91
36571240--36571490	67	3.9	67	91	6	369	43	0	2	54	1.16
36576702--36576800	49	2.0	49	100	0	198	34	16	12	37	1.85
36576769--36576830	30	2.1	30	100	0	124	29	17	9	43	1.81
36576720--36576879	79	2.0	79	100	0	320	32	16	11	39	1.84
36577166--36577204	16	2.3	19	79	20	50	58	23	0	17	1.38
36577652--36577683	15	2.1	15	94	0	55	65	0	6	28	1.16
36579291--36579345	28	2.0	28	82	10	69	29	10	5	54	1.57
36582407--36582518	34	3.1	34	66	24	95	45	5	9	39	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36582404--36582550	73	2.0	73	100	0	294	42	5	10	40	1.63
36582424--36582536	34	3.2	34	68	20	104	43	6	10	39	1.64
36594667--36594718	15	3.2	15	73	19	50	44	0	1	53	1.11
36594751--36594787	16	2.3	16	86	13	58	40	0	0	59	0.97
36599550--36599622	31	2.4	31	88	0	110	21	19	20	38	1.94
36604915--36604951	17	2.2	17	90	0	56	45	2	0	51	1.15
36606856--36607208	29	12.1	29	81	6	259	39	24	2	33	1.69
36606860--36607210	58	6.0	58	78	7	343	39	24	2	33	1.69
36612838--36612923	7	11.6	7	83	14	102	87	1	10	1	0.66
36612833--36612926	1	94.0	1	74	0	80	87	1	10	1	0.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126