genome.fa.s1.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  98  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29911377--29911415	18	2.1	19	85	4	53	58	0	0	41	0.98
29911382--29911475	43	2.2	43	75	9	104	58	2	0	39	1.10
29912215--29912252	18	2.1	18	90	9	60	65	0	0	34	0.93
29912225--29912257	13	2.3	15	90	10	52	69	0	0	30	0.88
29912215--29912260	16	2.6	18	77	22	53	65	0	0	34	0.93
29918450--29918540	27	3.4	27	96	1	166	50	5	3	40	1.42
29925616--29925648	17	1.9	17	88	11	50	18	6	3	72	1.18
29930693--29930736	16	2.8	16	100	0	88	38	0	0	61	0.96
29936932--29937184	127	2.0	127	93	0	434	25	20	24	30	1.99
29939562--29939815	127	2.0	126	94	0	445	24	22	24	29	1.99
29944715--29944794	6	13.8	6	68	12	51	43	1	3	51	1.27
29944697--29944794	34	2.9	34	81	4	108	42	2	4	51	1.32
29944697--29944792	17	5.6	17	80	5	95	41	2	4	52	1.32
29945466--29945505	15	2.7	15	81	14	55	55	2	7	35	1.42
29950045--29950081	2	18.5	2	89	10	58	45	0	2	51	1.15
29952346--29952406	30	2.1	30	87	3	88	40	0	39	19	1.52
29952524--29952569	18	2.5	18	89	3	65	34	17	15	32	1.91
29958076--29958134	31	1.9	29	83	16	75	45	8	10	35	1.68
29958812--29958980	20	8.8	20	73	13	108	34	4	2	57	1.32
29958806--29958980	9	18.4	9	70	19	72	34	4	2	58	1.31
29959043--29959105	21	3.0	21	81	2	74	44	3	3	49	1.34
29959088--29959174	9	9.7	9	75	23	78	28	2	1	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29962587--29962640	22	2.5	22	76	11	65	46	24	1	27	1.63
29963622--29963663	19	2.2	20	86	4	59	21	4	2	71	1.16
29963830--29963857	7	4.0	7	100	0	56	28	0	0	71	0.86
29963961--29964018	22	2.6	23	77	20	61	34	0	10	55	1.34
29964096--29964154	23	2.6	23	72	0	64	37	3	13	45	1.60
29964774--29964840	4	16.8	4	76	11	57	67	0	31	1	1.00
29964769--29964801	9	3.7	9	88	12	50	75	0	24	0	0.80
29964771--29964840	28	2.7	25	75	12	70	67	0	31	1	1.00
29967811--29967900	28	3.2	28	76	9	94	24	2	28	44	1.66
29967827--29967900	14	5.3	14	67	6	51	22	2	29	44	1.67
29970066--29970115	16	3.3	15	73	21	50	34	0	6	60	1.21
29970578--29970615	13	2.6	15	80	20	53	63	10	0	26	1.27
29970845--29970885	12	3.8	11	84	15	59	0	24	0	75	0.80
29971411--29971447	12	3.2	12	88	7	58	29	0	16	54	1.43
29971415--29971447	17	1.9	17	93	0	57	30	0	15	54	1.41
29971737--29971881	72	2.0	72	100	0	290	42	24	5	27	1.77
29983588--29983815	41	5.5	41	83	3	242	39	9	25	25	1.86
29989432--29989466	3	11.7	3	87	0	52	37	2	0	60	1.12
29990130--29990159	13	2.3	13	94	0	51	56	6	3	33	1.42
29996982--29997070	43	2.1	43	82	4	108	39	4	1	55	1.28
29998646--29998710	16	4.1	15	76	20	60	46	4	7	41	1.53
29998670--29998707	17	2.2	17	90	9	60	52	2	5	39	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30005019--30005060	22	1.9	22	85	9	59	19	4	16	59	1.54
30006557--30006595	19	2.1	19	85	4	53	74	0	7	17	1.05
30013138--30013305	59	2.8	59	91	0	264	51	6	7	33	1.56
30017175--30017220	16	3.2	16	71	28	57	43	0	8	47	1.34
30017144--30017213	11	6.2	11	74	14	54	42	1	4	51	1.30
30017904--30018010	38	2.8	38	81	2	108	28	10	24	36	1.88
30017998--30018233	119	2.0	119	96	0	436	22	13	27	36	1.92
30018236--30018336	40	2.4	43	77	14	120	33	17	19	28	1.95
30018236--30018340	42	2.5	42	80	12	126	33	18	19	29	1.95
30019474--30019520	25	1.9	24	87	12	69	36	4	4	55	1.39
30020277--30020331	19	2.8	19	75	10	58	34	1	0	63	1.05
30020255--30020353	39	2.5	39	85	6	119	41	1	1	56	1.13
30020279--30020348	9	7.3	9	70	12	50	31	1	1	65	1.10
30033219--30033244	8	3.2	8	100	0	52	65	0	11	23	1.25
30044914--30045013	29	3.4	28	75	14	101	39	5	28	28	1.77
30044990--30045158	30	5.6	30	82	2	171	39	1	20	38	1.63
30044991--30045158	60	2.8	58	82	5	201	39	1	20	38	1.63
30044997--30045161	90	1.8	89	84	3	224	40	1	20	38	1.63
30046233--30046284	15	3.5	15	76	10	52	36	3	0	59	1.16
30046259--30046289	3	10.3	3	100	0	62	35	0	0	64	0.94
30046996--30047041	6	8.0	6	76	9	51	52	6	0	41	1.27
30046997--30047048	11	4.6	11	75	13	52	53	5	0	40	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30046999--30047052	17	3.2	17	94	0	90	57	7	0	35	1.27
30047353--30047951	92	6.5	92	94	1	993	27	17	19	35	1.94
30047315--30047951	279	2.3	276	90	3	994	27	17	19	35	1.94
30060057--30060211	30	5.2	30	86	5	199	34	1	22	41	1.62
30059989--30060211	90	2.5	88	81	10	222	37	2	23	36	1.67
30060057--30060211	60	2.6	60	87	3	224	34	1	22	41	1.62
30061835--30061866	16	1.9	17	93	6	57	18	12	50	18	1.78
30062061--30062123	6	11.0	6	70	10	51	52	6	0	41	1.27
30062064--30062112	17	2.9	17	96	0	89	57	8	0	34	1.29
30062048--30062134	17	5.1	17	82	0	84	54	6	0	39	1.28
30064139--30064167	15	2.0	15	93	6	51	62	6	0	31	1.22
30064382--30065121	368	2.0	366	94	0	1300	34	11	23	30	1.90
30070314--30070339	12	2.2	12	100	0	52	34	34	7	23	1.83
30071320--30071545	103	2.2	103	87	0	335	37	17	12	33	1.87
30072962--30073131	60	2.8	60	86	5	227	44	0	20	34	1.56
30072896--30073167	30	9.1	29	77	6	206	40	1	22	34	1.65
30074026--30074067	14	3.1	14	80	10	52	26	2	0	71	0.98
30075305--30075670	39	9.4	39	70	8	192	26	18	31	23	1.98
30075368--30075980	39	15.8	38	69	9	186	28	20	28	22	1.99
30075372--30075553	78	2.3	78	83	2	242	25	20	31	22	1.98
30075299--30075670	117	3.2	116	80	4	392	26	19	30	23	1.98
30075689--30075979	155	1.9	155	80	5	338	30	21	26	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30075776--30075979	78	2.6	77	84	6	252	29	22	27	20	1.98
30078317--30078359	21	2.0	21	100	0	86	13	18	13	53	1.73
30083220--30083318	52	1.9	50	82	8	119	46	6	10	37	1.62
30084058--30084100	13	3.4	13	80	3	52	58	0	2	39	1.11
30084079--30084124	16	2.9	16	81	12	51	60	2	0	36	1.09
30084079--30084111	17	2.0	17	88	5	50	60	0	0	39	0.97
30085221--30085285	27	2.4	27	86	0	85	38	21	20	20	1.94
30085227--30085295	27	2.6	27	83	0	66	34	21	17	26	1.95
30088852--30088893	16	2.8	16	80	20	54	61	0	0	38	0.96
30104894--30104924	15	2.1	14	94	5	53	48	0	0	51	1.00
30104906--30104958	21	2.5	22	87	9	74	49	0	1	49	1.12
30107592--30107666	32	2.4	30	82	12	89	56	1	2	40	1.22
30107746--30107797	21	2.6	19	82	14	68	61	0	1	36	1.07
30118185--30118629	193	2.3	194	83	3	540	28	18	26	26	1.98
30119920--30119957	6	6.7	6	93	6	62	84	15	0	0	0.63
30121280--30121351	29	2.5	28	77	8	72	31	22	9	36	1.87
30121365--30121490	29	4.3	29	83	2	153	38	23	3	34	1.71
30121365--30121445	30	2.7	30	92	1	128	43	24	0	32	1.55
30121472--30121552	30	2.7	30	78	16	78	37	23	11	28	1.89
30127070--30127275	111	1.9	111	86	6	301	30	18	10	40	1.84
30127709--30128321	99	6.2	99	81	4	648	35	15	30	19	1.92
30127705--30128282	50	11.8	49	71	8	320	34	15	30	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30127705--30128338	198	3.2	196	82	4	724	35	15	30	18	1.92
30127817--30128282	49	9.4	51	69	12	231	34	15	30	19	1.93
30128094--30128394	49	6.1	49	72	10	147	36	16	27	18	1.93
30128426--30128479	21	2.6	20	72	18	56	37	14	27	20	1.92
30128640--30129033	42	9.6	42	81	6	409	31	25	17	25	1.97
30128642--30128992	80	4.3	83	78	9	308	31	25	17	25	1.97
30128640--30128977	122	2.8	122	81	6	407	31	24	18	24	1.97
30128642--30129036	164	2.4	162	79	7	413	31	25	17	25	1.97
30130692--30130857	30	5.6	29	73	14	106	39	21	2	37	1.66
30130692--30130797	30	3.5	31	81	10	121	37	21	1	38	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126